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Protein Thermostability Is Owing to Their Preferences to Non-Polar Smaller Volume Amino Acids, Variations in Residual Physico-Chemical Properties and More Salt-Bridges

https://doi.org/10.1371/journal.pone.0131495
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Structural differences between thermophilic and mesophilic membrane proteins
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Physicochemical basis for the rapid time‐action of LysB28ProB29‐insulin: Dissociation of a protein‐ligand complex
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Structure validation by Cα geometry: ϕ,ψ and Cβ deviation
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Deviations from Planarity of the Peptide Bond in Peptides and Proteins
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Protein thermal stability, hydrogen bonds, and ion pairs
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Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins
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Cis–trans peptide variations in structurally similar proteins
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The stability of thermophilic proteins: a study based on comprehensive genome comparison
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Protein Thermostabilizing Factors: High Relative Occurrence of Amino Acids, Residual Properties, and Secondary Structure Type in Different Residual State
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Theory of the non-planar peptide unit
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Occurrence and role ofcis peptide bonds in protein structures
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Polypeptide chain collapse and protein folding
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Understanding the importance of the aromatic amino-acid residues as hot-spots
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Role of weak interactions in thermal stability of proteins
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Effective factors in thermostability of thermophilic proteins
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Hydrophobic Core Formation and Dehydration in Protein Folding Studied by Generalized-Ensemble Simulations
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Modification of tryptophan and tryptophan residues in proteins by reactive nitrogen species
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Comparative analysis of protein thermostability: Differences in amino acid content and substitution at the surfaces and in the core regions of thermophilic and mesophilic proteins
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Thermophiles like hot T
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Protein tyrosine phosphorylation in plants: more abundant than expected?
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Stereochemical Criteria for Polypeptide and Protein Chain Conformations
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Five-membered heterocycles. Part III. Aromaticity of 1,3-imidazole in 5+n hetero-bicyclic molecules
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Rational evolutionary design: The theory of in vitro protein evolution
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Protein thermostability in extremophiles
inferredcites →https://doi.org/10.1016/s0378-1119(03)00660-7openalex-snapshot
Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
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Gene expression and the thiol redox state
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Mechanisms of protein folding
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Catalytic triads and their relatives
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Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey
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Phi/Psi-chology: Ramachandran revisited
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Extremophiles as a source for novel enzymes
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Determinants of Enzyme Thermostability Observed in the Molecular Structure ofThermusaquaticus d -Glyceraldehyde-3-phosphate Dehydrogenase at 2.5 Å Resolution,
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Conformation of the Backbone in Unfolded Proteins
inferredcites →https://doi.org/10.1021/j100008a001openalex-snapshot
Water Dynamics near a Dissolved Noble Gas. First Direct Experimental Evidence for a Retardation Effect
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Theoretical study of blocked glycine and alanine peptide analogs
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Stability of Cis, Trans, and Nonplanar Peptide Groups
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Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
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Linus Pauling and the planar peptide bond.
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Understanding biological functions through molecular networks
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Extremophiles
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Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
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Adaptive evolution: evaluating empirical support for theoretical predictions
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Protein stability imposes limits on organism complexity and speed of molecular evolution
inferredcites →https://doi.org/10.1073/pnas.0800452105openalex-snapshot
Entropic contributions and the influence of the hydrophobic environment in promiscuous protein–protein association
inferredcites →https://doi.org/10.1073/pnas.1107115108openalex-snapshot
Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites
inferredcites →https://doi.org/10.1073/pnas.95.5.2056openalex-snapshot
Engineering an enzyme to resist boiling
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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
inferredcites →https://doi.org/10.1074/jbc.274.53.37507openalex-snapshot
Aberrant Protein Deposition and Neurological Disease
inferredcites →https://doi.org/10.1074/jbc.r111.287995openalex-snapshot
Redox outside the Box: Linking Extracellular Redox Remodeling with Intracellular Redox Metabolism
inferredcites →https://doi.org/10.1093/nar/29.7.1608openalex-snapshot
Identification of thermophilic species by the amino acid compositions deduced from their genomes
inferredcites →https://doi.org/10.1093/nar/gkm423openalex-snapshot
PIC: Protein Interactions Calculator
inferredcites →https://doi.org/10.1093/oso/9780199637898.003.0008openalex-snapshot
Proline isomerization and its catalysis in protein folding
inferredcites →https://doi.org/10.1093/oxfordjournals.jbchem.a021609openalex-snapshot
Contribution of a Salt Bridge to the Thermostability of DNA Binding Protein HU from Bacillus stearothermophilus Determined by Site-Directed Mutagenesis
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026406openalex-snapshot
Relationship Between the Occurrence of Cysteine in Proteins and the Complexity of Organisms
inferredcites →https://doi.org/10.1093/protein/8.9.905openalex-snapshot
Composition analysis of α-helices in thermophilic organisms
inferredcites →https://doi.org/10.1110/ps.062130306openalex-snapshot
Lessons in stability from thermophilic proteins
inferredcites →https://doi.org/10.1110/ps.062398606openalex-snapshot
An inserted Gly residue fine tunes dynamics between mesophilic and thermophilic ribonucleases H
inferredcites →https://doi.org/10.1110/ps.440101openalex-snapshot
The effect of net charge on the solubility, activity, and stability of ribonuclease Sa
inferredcites →https://doi.org/10.1111/j.1742-4658.2007.05953.xopenalex-snapshot
Adaptation to high temperatures through macromolecular dynamics by neutron scattering
inferredcites →https://doi.org/10.1128/jb.98.1.289-297.1969openalex-snapshot
Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
inferredcites →https://doi.org/10.1128/mmbr.05018-11openalex-snapshot
Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System
inferredcites →https://doi.org/10.1146/annurev.physchem.58.032806.104449openalex-snapshot
Understanding Protein Evolution: From Protein Physics to Darwinian Selection
inferredcites →https://doi.org/10.1155/2014/475839openalex-snapshot
In Silico Analysis of β -Galactosidases Primary and Secondary Structure in relation to Temperature Adaptation
inferredcites →https://doi.org/10.1186/1471-2164-8-163openalex-snapshot
The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms
inferredcites →https://doi.org/10.1186/1472-6807-10-s1-s5openalex-snapshot
Discrimination of thermophilic and mesophilic proteins
inferredcites →https://doi.org/10.1186/1472-6807-12-18openalex-snapshot
Dependence of alpha-helical and beta-sheet amino acid propensities on the overall protein fold type
inferredcites →https://doi.org/10.1186/1475-2859-13-61openalex-snapshot
Genome-scale metabolic network reconstruction and in silico flux analysis of the thermophilic bacterium Thermus thermophilus HB27
inferredcites →https://doi.org/10.1186/1752-153x-7-44openalex-snapshot
The multiple roles of histidine in protein interactions
inferredcites →https://doi.org/10.1371/journal.pone.0030296openalex-snapshot
Electrostatic Contribution of Surface Charge Residues to the Stability of a Thermophilic Protein: Benchmarking Experimental and Predicted pKa Values
inferredcites →https://doi.org/10.1534/genetics.104.026344openalex-snapshot
Genome-Wide Patterns of Nucleotide Substitution Reveal Stringent Functional Constraints on the Protein Sequences of Thermophiles

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Purification and Characterization of Natural Solid-Substrate Degrading and Alcohol Producing Hyperthermostable Alkaline Amylase from Bacillus cereus (sm-sr14)
inferred← citeshttps://doi.org/10.2174/1570164615666180911113251openalex-snapshot
Protein Secondary Structure Determination (PSSD): A New and Simple Approach
inferred← citeshttps://doi.org/10.2174/1574893613666180315121614openalex-snapshot
Protein Stability Determination (PSD): A Tool for Proteomics Analysis
inferred← citeshttps://doi.org/10.22099/mbrc.2022.44594.1777openalex-snapshot
Stress adaptation signature into the functional units of spike, envelope, membrane protein and ssRNA of SARS-CoV-2.
inferred← citeshttps://doi.org/10.22207/jpam.13.4.07openalex-snapshot
In silico Approach to Elucidate Factors Associated with GH1 β-Glucosidase Thermostability
inferred← citeshttps://doi.org/10.24840/2183-6493_007.003_0002openalex-snapshot
Thermophilic Enzymes
inferred← citeshttps://doi.org/10.3389/fmolb.2021.699203openalex-snapshot
A Single Point Mutation Controls the Rate of Interconversion Between the g+ and g− Rotamers of the Histidine 189 χ2 Angle That Activates Bacterial Enzyme I for Catalysis
inferred← citeshttps://doi.org/10.3390/app10228128openalex-snapshot
Taking Advantage of Promiscuity of Cold-Active Enzymes
inferred← citeshttps://doi.org/10.3390/catal12020139openalex-snapshot
Purification and Structural Characterization of the Auxiliary Activity 9 Native Lytic Polysaccharide Monooxygenase from Thermoascus aurantiacus and Identification of Its C1- and C4-Oxidized Reaction Products
inferred← citeshttps://doi.org/10.3390/ijms252211925openalex-snapshot
Complete Mitogenomes of Xinjiang Hares and Their Selective Pressure Considerations
inferred← citeshttps://doi.org/10.3390/molecules25204806openalex-snapshot
Computational Design of Nitrile Hydratase from Pseudonocardia thermophila JCM3095 for Improved Thermostability
inferred← citeshttps://doi.org/10.34172/ehem.2021.14openalex-snapshot
Peptides on a rescue mission against the hazardous cidal chemicals used in Eastern Indian Agriculture: An in-silico approach based on field survey in 2020
inferred← citeshttps://doi.org/10.4308/hjb.31.2.348-356openalex-snapshot
Sequence-Structure Based Comparison of Structurally Homologous Thermophilic and Mesophilic Polyethylene Terephthalate (PET) Hydrolases
inferred← citeshttps://doi.org/10.48550/arxiv.2103.03512openalex-snapshot
Amino acid frequency and domain features serve well for random forest based classification of thermophilic and mesophilic protein; a case study on serine proteases
inferred← citeshttps://doi.org/10.5204/thesis.eprints.256582openalex-snapshot
Microbiomes and Machine Learning: Predicting Community-Associated Environmental Factors Using Taxonomic Profiles
inferred← citeshttps://doi.org/10.6084/m9.figshare.26619496openalex-snapshot
Additional file 1 of Characterization of cold-active trehalose synthase from Pseudarthrobacter sp. for trehalose bioproduction
inferred← citeshttps://doi.org/10.64898/2026.09.05.749644openalex-snapshot
Evolutionary analysis of PINK1 reveals key roles of the N- and C-terminal extensions and TOM20 in folding its kinase domain
inferred← citeshttps://doi.org/10.70675/190dfcaez1a58z4592z8996zfe84822b493eopenalex-snapshot
Dynamique spatiale et temporelle des communautés mircrobiennes dans les édifices hydrothermaux actifs
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