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Diversity of Marine-Derived Fungal Cultures Exposed by DNA Barcodes: The Algorithm Matters
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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A Global Census of Marine Microbes
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Phylogenetic Species Recognition and Species Concepts in Fungi
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Biodiversity and Ecophysiology of Yeasts
inferredcites →https://doi.org/10.1007/3-540-30985-3_1openalex-snapshot
Yeast Biodiversity: How Many and How Much?
inferredcites →https://doi.org/10.1007/bf00160155openalex-snapshot
Estimation of evolutionary distances between nucleotide sequences
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf02101990openalex-snapshot
A new method for calculating evolutionary substitution rates
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Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland
inferredcites →https://doi.org/10.1007/s10531-006-9120-zopenalex-snapshot
Fungal biodiversity in aquatic habitats
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PCR protocols — A guide to methods and applications
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
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Lessons from the Past and Charting the Future of Marine Natural Products Drug Discovery and Chemical Biology
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Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: Impacts on the physiology of a coral reef sponge
inferredcites →https://doi.org/10.1016/j.ecss.2012.03.010openalex-snapshot
Intra-annual variation in turbidity in response to terrestrial runoff on near-shore coral reefs of the Great Barrier Reef
inferredcites →https://doi.org/10.1016/j.fm.2009.12.009openalex-snapshot
Yeast biodiversity from oleic ecosystems: Study of their biotechnological properties
inferredcites →https://doi.org/10.1016/j.funeco.2013.12.002openalex-snapshot
Fungi ahoy! Diversity on marine wooden substrata in the high North
inferredcites →https://doi.org/10.1016/j.mycres.2007.03.004openalex-snapshot
A higher-level phylogenetic classification of the Fungi
inferredcites →https://doi.org/10.1016/j.trac.2011.10.014openalex-snapshot
Analytical techniques for discovery of bioactive compounds from marine fungi
inferredcites →https://doi.org/10.1016/j.ympev.2012.03.021openalex-snapshot
Phylogenetic relationships among the Caribbean members of the Cliona viridis complex (Porifera, Demospongiae, Hadromerida) using nuclear and mitochondrial DNA sequences
inferredcites →https://doi.org/10.1016/j.ympev.2014.01.004openalex-snapshot
Combining morphometrics with molecular taxonomy: How different are similar foliose keratose sponges from the Australian tropics?
inferredcites →https://doi.org/10.1016/s1055-7903(03)00094-0openalex-snapshot
ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae
inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot
Ribosomal ITS sequences and plant phylogenetic inference
inferredcites →https://doi.org/10.1023/a:1008823515157openalex-snapshot
Role of fungi in marine ecosystems
inferredcites →https://doi.org/10.1038/28079openalex-snapshot
Cause of sea fan death in the West Indies
inferredcites →https://doi.org/10.1038/ismej.2010.74openalex-snapshot
Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
inferredcites →https://doi.org/10.1038/npg.els.0005108openalex-snapshot
Evolutionary Distance: Estimation
inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00861.xopenalex-snapshot
On the unreliability of published DNA sequences
inferredcites →https://doi.org/10.1073/pnas.0903474106openalex-snapshot
The interaction of TIGIT with PVR and PVRL2 inhibits human NK cell cytotoxicity
inferredcites →https://doi.org/10.1073/pnas.1117018109openalex-snapshot
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
inferredcites →https://doi.org/10.1073/pnas.78.1.454openalex-snapshot
Estimation of evolutionary distances between homologous nucleotide sequences.
inferredcites →https://doi.org/10.1080/10635150802032990openalex-snapshot
Testing the Reliability of Genetic Methods of Species Identification via Simulation
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkn945openalex-snapshot
Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a111190openalex-snapshot
Signal, Noise, and Reliability in Molecular Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040023openalex-snapshot
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
inferredcites →https://doi.org/10.1093/sysbio/syp027openalex-snapshot
Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1111/1755-0998.12022openalex-snapshot
Cryptic diversity in flathead fishes ( S corpaeniformes: P latycephalidae) across the I ndo‐ W est P acific uncovered by DNA barcoding
inferredcites →https://doi.org/10.1111/1755-0998.12235openalex-snapshot
VIP B arcoding: composition vector‐based software for rapid species identification based on DNA barcoding
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05239.xopenalex-snapshot
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05559.xopenalex-snapshot
Large‐scale species delimitation method for hyperdiverse groups
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03003.xopenalex-snapshot
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
inferredcites →https://doi.org/10.1111/j.1574-6968.2009.01618.xopenalex-snapshot
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
inferredcites →https://doi.org/10.1128/aem.03870-12openalex-snapshot
Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
inferredcites →https://doi.org/10.1146/annurev-marine-120710-100802openalex-snapshot
Marine Fungi: Their Ecology and Molecular Diversity
inferredcites →https://doi.org/10.1186/1471-2105-14-s7-s4openalex-snapshot
Alignment-free analysis of barcode sequences by means of compression-based methods
inferredcites →https://doi.org/10.1186/1471-2105-6-102openalex-snapshot
Evolutionary distance estimation and fidelity of pair wise sequence alignment
inferredcites →https://doi.org/10.1186/1471-2105-6-278openalex-snapshot
Multiple sequence alignment accuracy and evolutionary distance estimation
inferredcites →https://doi.org/10.1186/1471-2105-6-298openalex-snapshot
Kalign – an accurate and fast multiple sequence alignment algorithm
inferredcites →https://doi.org/10.1186/1471-2180-10-189openalex-snapshot
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
inferredcites →https://doi.org/10.1371/journal.pbio.0020312openalex-snapshot
Identification of Birds through DNA Barcodes
inferredcites →https://doi.org/10.1371/journal.pcbi.1000844openalex-snapshot
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
inferredcites →https://doi.org/10.1371/journal.pone.0000059openalex-snapshot
Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective
inferredcites →https://doi.org/10.1371/journal.pone.0013991openalex-snapshot
Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments
inferredcites →https://doi.org/10.1371/journal.pone.0073800openalex-snapshot
Phylogeny Drives Large Scale Patterns in Australian Marine Bioactivity and Provides a New Chemical Ecology Rationale for Future Biodiscovery
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.1517/14622416.3.1.131openalex-snapshot
Recent progress in multiple sequence alignment: a survey
inferredcites →https://doi.org/10.21548/20-2-2234openalex-snapshot
Yeast Biodiversity in Vineyards and Wineries and Its Importance to the South African Wine Industry. A Review
inferredcites →https://doi.org/10.25903/k5pz-ng44openalex-snapshot
The ecology and feeding biology of the sponge Rhopaloeides odorabile
inferredcites →https://doi.org/10.2989/1814232x.2011.622095openalex-snapshot
Life in the World's Oceans: Diversity, Distribution, and Abundance
inferredcites →https://doi.org/10.3390/md7020097openalex-snapshot
Broad-Spectrum Antimicrobial Epiphytic and Endophytic Fungi from Marine Organisms: Isolation, Bioassay and Taxonomy
inferredcites →https://doi.org/10.3390/md8041417openalex-snapshot
Marine Drugs from Sponge-Microbe Association—A Review
inferredcites →https://doi.org/10.3390/md9040561openalex-snapshot
Phylogenetic Identification of Fungi Isolated from the Marine Sponge Tethya aurantium and Identification of Their Secondary Metabolites
inferredcites →https://doi.org/10.4137/ebo.s653openalex-snapshot
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
inferredcites →https://doi.org/10.5138/ijbr.v1i1.328openalex-snapshot
Assessment Of Mycological Diversity Of Marine Sediment Of South East Coast Of Tamilnadu, India
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Deep-sea squat lobsters of the genus Paramunida Baba, 1988 (Crustacea: Decapoda: Munididae) from north-western Australia: new records and description of three new species
inferred← citeshttps://doi.org/10.1007/978-3-030-18975-4_2openalex-snapshot
Occurrence and Distribution of Fungi in Saline Environments
inferred← citeshttps://doi.org/10.1007/978-3-319-41840-7_1openalex-snapshot
DNA Barcoding in the Marine Habitat: An Overview
inferred← citeshttps://doi.org/10.1007/978-981-16-8877-5_13openalex-snapshot
Exploring Marine Fungal Diversity and Their Applications in Agriculture
inferred← citeshttps://doi.org/10.1007/s11274-017-2321-7openalex-snapshot
Diversity of culturable filamentous Ascomycetes in the eastern South Pacific Ocean off Chile
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Neocamarosporium jorjanensis, N. persepolisi, and N. solicola spp. nov. (Neocamarosporiaceae, Pleosporales) isolated from saline lakes of Iran indicate the possible halotolerant nature for the genus
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Genome sequencing as a new window into the microbial community of membrane bioreactors – A critical review
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Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches
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Diverse groups of fungi are associated with plastics in the surface waters of the Western South Atlantic and the Antarctic Peninsula
inferred← citeshttps://doi.org/10.1134/s0026261718060061openalex-snapshot
Method for Isolation and Enumeration of Fungi Developing in Marine Sediments
inferred← citeshttps://doi.org/10.1134/s1995425518050062openalex-snapshot
Microscopic Fungi of White Sea Sediments
inferred← citeshttps://doi.org/10.1186/s12896-016-0233-5openalex-snapshot
Growth of marine fungi on polymeric substrates
inferred← citeshttps://doi.org/10.17656/jzs.10627openalex-snapshot
Exploring Fungal Diversity and distribution in Dukan Freshwater Lake Using ITS rDNA-based PCR Cloning/ Sequencing
inferred← citeshttps://doi.org/10.18520/cs/v116/i5/733-740openalex-snapshot
Isolation of Fungi from Various Habitats and their Possible Bioremediation
inferred← citeshttps://doi.org/10.3389/fmicb.2018.02072openalex-snapshot
Molecular Networking-Based Metabolome and Bioactivity Analyses of Marine-Adapted Fungi Co-cultivated With Phytopathogens
inferred← citeshttps://doi.org/10.3390/jof11060459openalex-snapshot
Hidden Treasures of Colombia’s Pacific Mangrove: New Fungal Species and Records of Macrofungi (Basidiomycota)
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Aspergillus Sydowii Marine Fungal Bloom in Australian Coastal Waters, Its Metabolites and Potential Impact on Symbiodinium Dinoflagellates
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