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Transcriptome Profiling and Molecular Pathway Analysis of Genes in Association with Salinity Adaptation in Nile Tilapia Oreochromis niloticus

https://doi.org/10.1371/journal.pone.0136506

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Application of second-generation sequencing (SGS) and third generation sequencing (TGS) in aquaculture breeding program

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738901openalex-snapshot

Effects of hyperosmotic stress on the intestinal microbiota, transcriptome, and immune function of mandarin fish (Siniperca chuatsi)

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.740114openalex-snapshot

Effects of salinity on life history traits and fatty acid-binding proteins in the marine rotifer, Brachionus plicatilis

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740585openalex-snapshot

Effect of salinity on fads2 and elovl gene expression and fatty acid profile of the euryhaline flatfish Paralichthys orbignyanus

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740913openalex-snapshot

Genome-wide association studies in a F1 tilapia population reveal novel genetic loci associated with salinity tolerance

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.743160openalex-snapshot

Integrated transcriptome and weighted gene co-expression network analyses reveal hepatic metabolic response of largemouth bass (Micropterus salmoides) under hypertonic stress

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.744321openalex-snapshot

L-proline enhances growth performance, digestive function and stress resistance of Chinese mitten crab (Eriocheir sinensis) larvae in high salinity-alkalinity rearing water

inferred← citeshttps://doi.org/10.1016/j.aquatox.2016.05.020openalex-snapshot

Response of AMP-activated protein kinase and energy metabolism to acute nitrite exposure in the Nile tilapia Oreochromis niloticus

inferred← citeshttps://doi.org/10.1016/j.aquatox.2021.105970openalex-snapshot

RNA-seq analyses of Marine Medaka (Oryzias melastigma) reveals salinity responsive transcriptomes in the gills and livers

inferred← citeshttps://doi.org/10.1016/j.cbd.2019.100612openalex-snapshot

Transcriptome profiling of the low-salinity stress responses in the gills of the juvenile Pseudopleuronectes yokohamae

inferred← citeshttps://doi.org/10.1016/j.cbd.2019.100651openalex-snapshot

Transcriptome changes for Nile tilapia (Oreochromis niloticus) in response to alkalinity stress

inferred← citeshttps://doi.org/10.1016/j.cbd.2021.100815openalex-snapshot

Environmental salinity influences the branchial expression of TCR pathway related genes based on transcriptome of a catadromous fish

inferred← citeshttps://doi.org/10.1016/j.cbd.2021.100949openalex-snapshot

Transcriptomic analysis of pituitary in female and male spotted scat (Scatophagus argus) after 17β-estradiol injection

inferred← citeshttps://doi.org/10.1016/j.cbd.2023.101152openalex-snapshot

Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)

inferred← citeshttps://doi.org/10.1016/j.cbd.2024.101188openalex-snapshot

Transcriptional responses of Crassostrea hongkongensis under high and low salinity stress

inferred← citeshttps://doi.org/10.1016/j.cbd.2024.101228openalex-snapshot

Structure and gene expression changes of the gill and liver in juvenile black porgy (Acanthopagrus schlegelii) under different salinities

inferred← citeshttps://doi.org/10.1016/j.cbd.2024.101324openalex-snapshot

Comprehensive transcriptome analysis unravels the perturbated cardiovascular-related molecular mechanisms of tilapia under high-temperature stress

inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101742openalex-snapshot

Metabolomic insights into fish osmoregulation: Unveiling adaptive mechanisms to salinity change

inferred← citeshttps://doi.org/10.1016/j.cbd.2026.101762openalex-snapshot

A multi-omics investigation reveals the hepatic response to salinity stress in grass carp (Ctenopharyngodon idella)

inferred← citeshttps://doi.org/10.1016/j.cbpc.2021.109212openalex-snapshot

Transcriptomic analysis of gills in nitrite-tolerant and -sensitive families of Litopenaeus vannamei

inferred← citeshttps://doi.org/10.1016/j.cbpc.2024.110078openalex-snapshot

A time-dependent interactive effect of nitrite and ammonia on inflammatory and immune response in the head kidney of silver carp (Hypophthalmichthys molitrix)

inferred← citeshttps://doi.org/10.1016/j.cbpc.2024.110102openalex-snapshot

Effects of nanopolystyrene and/or phoxim exposure on digestive function of Eriocheir sinensis

inferred← citeshttps://doi.org/10.1016/j.ecoenv.2018.07.053openalex-snapshot

Physiological and behavioural responses to acid and osmotic stress and effects of Mucuna extract in Guppies

inferred← citeshttps://doi.org/10.1016/j.ecoenv.2019.109753openalex-snapshot

Responses of hemocyanin and energy metabolism to acute nitrite stress in juveniles of the shrimp Litopenaeus vannamei

inferred← citeshttps://doi.org/10.1016/j.ecoenv.2023.114633openalex-snapshot

Stress response and tolerance mechanisms of NaHCO3 exposure based on biochemical assays and multi-omics approach in the liver of crucian carp (Carassius auratus)

inferred← citeshttps://doi.org/10.1016/j.envres.2020.109508openalex-snapshot

Transcriptomic responses to pollution in natural riverine environment in Rita rita

inferred← citeshttps://doi.org/10.1016/j.fsi.2015.12.005openalex-snapshot

Comparative transcriptome analysis reveals molecular strategies of oriental river prawn Macrobrachium nipponense in response to acute and chronic nitrite stress

inferred← citeshttps://doi.org/10.1016/j.fsi.2016.03.008openalex-snapshot

Natural environmental impacts on teleost immune function

inferred← citeshttps://doi.org/10.1016/j.fsi.2017.08.041openalex-snapshot

Transcriptome analysis of hybrid tilapia (Oreochromis spp.) with Streptococcus agalactiae infection identifies Toll-like receptor pathway-mediated induction of NADPH oxidase complex and piscidins as primary immune-related responses

inferred← citeshttps://doi.org/10.1016/j.fsi.2019.08.034openalex-snapshot

Transcriptomic analysis of Baltic cod (Gadus morhua) liver infected with Contracaecum osculatum third stage larvae indicates parasitic effects on growth and immune response

inferred← citeshttps://doi.org/10.1016/j.fsi.2020.07.019openalex-snapshot

Transcriptome analysis provides insights into the effects of myo-inositol on the turbot Scophthalmus maximus

inferred← citeshttps://doi.org/10.1016/j.fsi.2020.11.010openalex-snapshot

Liver and spleen transcriptome reveals that Oreochromis aureus under long-term salinity stress may cause excessive energy consumption and immune response

inferred← citeshttps://doi.org/10.1016/j.fsi.2021.12.032openalex-snapshot

Comparative proteomic profiling in Chinese shrimp Fenneropenaeus chinensis under low pH stress

inferred← citeshttps://doi.org/10.1016/j.fsi.2022.02.013openalex-snapshot

Advances in the complement system of a teleost fish, Oreochromis niloticus

inferred← citeshttps://doi.org/10.1016/j.fsi.2022.08.055openalex-snapshot

Effects of salinity stress on methylation of the liver genome and complement gene in large yellow croaker (Larimichthys crocea)

inferred← citeshttps://doi.org/10.1016/j.fsi.2023.108640openalex-snapshot

Different reoxygenation rates induce different metabolic, apoptotic and immune responses in Golden Pompano (Trachinotus blochii) after hypoxic stress

inferred← citeshttps://doi.org/10.1016/j.fsi.2024.109878openalex-snapshot

Unveiling osmoregulation and immunological adaptations in Eleutheronema tetradactylum gills through high-throughput single-cell transcriptome sequencing

inferred← citeshttps://doi.org/10.1016/j.gene.2017.10.002openalex-snapshot

Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia

inferred← citeshttps://doi.org/10.1016/j.gene.2022.147044openalex-snapshot

Transcriptome analysis of gills reveals novel insights into the molecular response of stinging catfish (Heteropneustes fossilis) to environmental hypertonicity

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2020.03.178openalex-snapshot

Alternative splicing (AS) mechanism plays important roles in response to different salinity environments in spotted sea bass

inferred← citeshttps://doi.org/10.1016/j.jprot.2017.08.005openalex-snapshot

Salinity stress, enhancing basal and induced immune responses in striped catfish Pangasianodon hypophthalmus (Sauvage)

inferred← citeshttps://doi.org/10.1016/j.margen.2016.03.008openalex-snapshot

Ostracod (Ostracoda, Crustacea) genomics — Promises and challenges

inferred← citeshttps://doi.org/10.1016/j.margen.2019.04.006openalex-snapshot

Microarray analysis of gene expression of Atlantic cod from different Baltic Sea regions: Adaptation to salinity

inferred← citeshttps://doi.org/10.1016/j.margen.2021.100879openalex-snapshot

Transcriptomic responses of saline-adapted Nile tilapia (Oreochromis niloticus) to rearing in both saline and freshwater

inferred← citeshttps://doi.org/10.1016/j.stress.2022.100098openalex-snapshot

Computational identification of key genes and regulatory miRNAs responsible for differential regulation of host-pathogen response during early and late blight diseases in tomato

inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.04.017openalex-snapshot

A chromosome-level genome assembly of the yellowfin seabream (Acanthopagrus latus; Hottuyn, 1782) provides insights into its osmoregulation and sex reversal

inferred← citeshttps://doi.org/10.1038/s41598-025-86513-xopenalex-snapshot

Comparative toxicotranscriptomics of longterm cypermethrin exposure to aquacultured fish Labeo catla (Catla)

inferred← citeshttps://doi.org/10.1073/pnas.1614712114openalex-snapshot

Osmolality/salinity-responsive enhancers (OSREs) control induction of osmoprotective genes in euryhaline fish

inferred← citeshttps://doi.org/10.1080/09168451.2016.1151341openalex-snapshot

Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod

inferred← citeshttps://doi.org/10.1093/bfgp/elac007openalex-snapshot

Expanding interactome analyses beyond model eukaryotes

inferred← citeshttps://doi.org/10.1093/jeb/voag015openalex-snapshot

Coastal and inland American alligators ( Alligator mississippiensis ) diverge along physiological axes in response to a salinity gradient

inferred← citeshttps://doi.org/10.1111/age.12989openalex-snapshot

Genomics to accelerate genetic improvement in tilapia

inferred← citeshttps://doi.org/10.1111/are.13625openalex-snapshot

Significant association of SNP polymorphism in the tilapiaenhancer of polycomb homolog 1gene with salt tolerance

inferred← citeshttps://doi.org/10.1111/are.14532openalex-snapshot

Effects of salinity on growth, nutrient composition, fatty acid composition and energy metabolism ofScylla paramamosainduring indoor overwintering

inferred← citeshttps://doi.org/10.1111/are.14607openalex-snapshot

Response of the PI3K‐AKT signalling pathway to low salinity and the effect of its inhibition mediated by wortmannin on ion channels in turbot Scophthalmus maximus

inferred← citeshttps://doi.org/10.1111/are.15177openalex-snapshot

Identification and characterization of miRNAs and target genes response to hypoosmotic adaption in the cobia, Rachycentron canadum

inferred← citeshttps://doi.org/10.1111/jwas.12934openalex-snapshot

Liver comparative transcriptome analysis reveals the mechanism of the Hainan medaka, Oryzias curvinotus, to adapt to salinity

inferred← citeshttps://doi.org/10.1111/raq.12298openalex-snapshot

Transcriptomics in aquaculture: current status and applications

inferred← citeshttps://doi.org/10.1111/raq.12838openalex-snapshot

Status of conventional and molecular breeding of salinity‐tolerant tilapia

inferred← citeshttps://doi.org/10.1139/facets-2017-0015openalex-snapshot

Transcriptomic responses to environmental change in fishes: Insights from RNA sequencing

inferred← citeshttps://doi.org/10.1155/2024/9388755openalex-snapshot

Effects of Diets With Different Carbohydrate to Lipid Ratios on the Growth Performance, Ion Transport, and Carbohydrate, Lipid and Ammonia Metabolism of Nile Tilapia ( Oreochromis niloticus ) Under Long‐Term Saline–Alkali Stress

inferred← citeshttps://doi.org/10.1155/are/2157396openalex-snapshot

Brain Transcriptome Profiles of Greater Amberjack ( Seriola dumerili ) Juveniles Under Long‐Term Hypo‐ and Hypersaline Stress

inferred← citeshttps://doi.org/10.1186/s12864-017-3557-1openalex-snapshot

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

inferred← citeshttps://doi.org/10.1186/s12864-018-4825-4openalex-snapshot

Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

inferred← citeshttps://doi.org/10.1186/s12864-018-5108-9openalex-snapshot

Developing specific molecular biomarkers for thermal stress in salmonids

inferred← citeshttps://doi.org/10.1186/s12864-018-5115-xopenalex-snapshot

Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

inferred← citeshttps://doi.org/10.1186/s12864-026-13244-2openalex-snapshot

Salinity-associated differential gene expression in natural populations of the euryhaline killifish Aphanius iberus

inferred← citeshttps://doi.org/10.1186/s12915-024-01885-2openalex-snapshot

Genomic insights into the seawater adaptation in Cyprinidae

inferred← citeshttps://doi.org/10.1371/journal.pone.0171483openalex-snapshot

Transcriptomic analysis of Crassostrea sikamea × Crassostrea angulata hybrids in response to low salinity stress

inferred← citeshttps://doi.org/10.1515/biol-2018-0040openalex-snapshot

Methylation pattern polymorphism of cyp19a in Nile tilapia and hybrids

inferred← citeshttps://doi.org/10.32657/10356/74843openalex-snapshot

Genome-wide search for quantitative trait loci (QTL) and genes for increased growth and improved fatty acid content in salt tolerant tilapia (oreochromis spp.)

inferred← citeshttps://doi.org/10.3389/fgene.2019.00244openalex-snapshot

Transcriptome Analysis Identified Genes for Growth and Omega-3/-6 Ratio in Saline Tilapia

inferred← citeshttps://doi.org/10.3389/fgene.2019.00894openalex-snapshot

Transcriptome Analysis of Ovary Development in Nile Tilapia Under Different Photoperiod Regimes

inferred← citeshttps://doi.org/10.3389/fgene.2020.00244openalex-snapshot

Genome-Wide Characterization of Alternative Splicing Events and Their Responses to Cold Stress in Tilapia

inferred← citeshttps://doi.org/10.3389/fmars.2021.763269openalex-snapshot

Effects of Flow Velocity on the Growth and Survival of Haliotis discus hannai Larvae in the Recirculating Upflow System From the Point of Energy Metabolism

inferred← citeshttps://doi.org/10.3389/fmars.2022.864338openalex-snapshot

Comparative Transcriptome Analysis Reveals the Adaptation Mechanism to High Salinity in Litopenaeus vannamei

inferred← citeshttps://doi.org/10.3389/fphys.2018.00219openalex-snapshot

Brain Transcriptome Profiling Analysis of Nile Tilapia (Oreochromis niloticus) Under Long-Term Hypersaline Stress

inferred← citeshttps://doi.org/10.3389/fphys.2018.00254openalex-snapshot

Growth and Stress Axis Responses to Dietary Cholesterol in Nile Tilapia (Oreochromis niloticus) in Brackish Water

inferred← citeshttps://doi.org/10.3389/fphys.2021.640898openalex-snapshot

Dietary Trivalent Chromium Exposure Up-Regulates Lipid Metabolism in Coral Trout: The Evidence From Transcriptome Analysis

inferred← citeshttps://doi.org/10.3389/fphys.2022.1006113openalex-snapshot

Mechanisms of Na+ uptake from freshwater habitats in animals

inferred← citeshttps://doi.org/10.3389/fphys.2022.991366openalex-snapshot

Kidney transcriptome response to salinity adaptation in Labeo rohita

inferred← citeshttps://doi.org/10.3389/fphys.2025.1655953openalex-snapshot

Interactive effects of salinity and dietary lipid sources on growth, hepatic lipid metabolism, and transcriptomic profiles in spotted sea bass (Lateolabrax maculatus)

inferred← citeshttps://doi.org/10.3390/ani12030327openalex-snapshot

RNA Sequencing Analysis Reveals Divergent Adaptive Response to Hypo- and Hyper-Salinity in Greater Amberjack (Seriola dumerili) Juveniles

inferred← citeshttps://doi.org/10.3390/ani13091503openalex-snapshot

RNA Sequencing (RNA-Seq) Analysis Reveals Liver Lipid Metabolism Divergent Adaptive Response to Low- and High-Salinity Stress in Spotted Scat (Scatophagus argus)

inferred← citeshttps://doi.org/10.3390/ani13233677openalex-snapshot

Effects of Dietary Folic Acid Supplementation on Sex Differences in Oriental River Prawn, Macrobrachium nipponense

inferred← citeshttps://doi.org/10.3390/ani15131932openalex-snapshot

Transcriptomic Analysis of Trachinotus ovatus Under Flow Velocity Stress

inferred← citeshttps://doi.org/10.3390/biology13070530openalex-snapshot

Effects of Different Salinity Stress on the Transcriptomic Responses of Freshwater Crayfish (Procambarus clarkii, Girard, 1852)

inferred← citeshttps://doi.org/10.3390/biology13090705openalex-snapshot

Feeding Behavior, Gut Microbiota, and Transcriptome Analysis Reveal Individual Growth Differences in the Sea Urchin Strongylocentrotus intermedius

inferred← citeshttps://doi.org/10.3390/biology14060667openalex-snapshot

Aquatic Organisms in Response to Salinity Stress: Ecological Impacts, Adaptive Mechanisms, and Resilience Strategies

inferred← citeshttps://doi.org/10.3390/biology14060718openalex-snapshot

Molecular Adaptations and Quality Enhancements in a Hybrid (Erythroculter ilishaeformis ♀ × Ancherythroculter nigrocauda ♂) Cultured in Saline–Alkali Water

inferred← citeshttps://doi.org/10.3390/cells12232760openalex-snapshot

Diverse Transcriptome Responses to Salinity Change in Atlantic Cod Subpopulations

inferred← citeshttps://doi.org/10.3390/genes11070733openalex-snapshot

Transcriptomic Analysis of Gill and Kidney from Asian Seabass (Lates calcarifer) Acclimated to Different Salinities Reveals Pathways Involved with Euryhalinity

inferred← citeshttps://doi.org/10.3390/genes14040795openalex-snapshot

Whole Transcriptome Analysis of Differentially Expressed Genes in Cultured Nile Tilapia (O. niloticus) Subjected to Chronic Stress Reveals Signaling Pathways Associated with Depressed Growth

inferred← citeshttps://doi.org/10.3390/su16219276openalex-snapshot

Predicting Tilapia Productivity in Geothermal Ponds: A Genetic Algorithm Approach for Sustainable Aquaculture Practices

inferred← citeshttps://doi.org/10.3390/v15040900openalex-snapshot

The Modulation of Immune Responses in Tilapinevirus tilapiae-Infected Fish Cells through MAPK/ERK Signalling

inferred← citeshttps://doi.org/10.3390/vetsci13010105openalex-snapshot

Multi-Omics Analysis Provides Insights into the Key Regulatory Pathways of Energy Metabolism in GIFT Under Salinity Stress

inferred← citeshttps://doi.org/10.35414/akufemubid.1514464openalex-snapshot

Tuzluluğa maruz bırakılan Pseudotropheus acei balığının solungaç mukus hücrelerinin incelenmesi

inferred← citeshttps://doi.org/10.5433/1679-0359.2022v43n1p397openalex-snapshot

Effects of salinity and plant-based diet or animal-plant combination diet on the performance and metabolic status of juvenile Nile tilapia

inferred← citeshttps://doi.org/10.6084/m9.figshare.25649325openalex-snapshot

Additional file 1 of Genomic insights into the seawater adaptation in Cyprinidae

inferred← citeshttps://doi.org/10.6084/m9.figshare.25649464openalex-snapshot

Additional file 2 of Genomic insights into the seawater adaptation in Cyprinidae

inferred← citeshttps://doi.org/10.6084/m9.figshare.26708762openalex-snapshot

Additional file 3 of Genomic insights into the seawater adaptation in Cyprinidae

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