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In-Depth Duodenal Transcriptome Survey in Chickens with Divergent Feed Efficiency Using RNA-Seq
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/0301-6226(91)90127-copenalex-snapshot
Optimization of a model to estimate residual feed consumption in the laying hen
inferredcites →https://doi.org/10.1016/j.ygeno.2012.02.003openalex-snapshot
Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing
inferredcites →https://doi.org/10.1016/s0196-9781(97)00077-6openalex-snapshot
Role of Brain Angiotensin in Thirst and Sodium Appetite of Rats
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Segregation of QTL for production traits in commercial meat-type chickens
inferredcites →https://doi.org/10.1038/cddis.2014.157openalex-snapshot
The bromodomain protein BRD4 regulates the KEAP1/NRF2-dependent oxidative stress response
inferredcites →https://doi.org/10.1038/nature03154openalex-snapshot
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nprot.2012.016openalex-snapshot
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
inferredcites →https://doi.org/10.1038/nrg2934openalex-snapshot
RNA sequencing: advances, challenges and opportunities
inferredcites →https://doi.org/10.1039/c4nr05166aopenalex-snapshot
Global transcriptomic analysis of model human cell lines exposed to surface-modified gold nanoparticles: the effect of surface chemistry
inferredcites →https://doi.org/10.1073/pnas.0802690105openalex-snapshot
Mice lacking angiotensin-converting enzyme have increased energy expenditure, with reduced fat mass and improved glucose clearance
inferredcites →https://doi.org/10.1079/wps20030020openalex-snapshot
Genetic variation in feed utilization efficiency of meat-type chickens
inferredcites →https://doi.org/10.1080/00071669108417402openalex-snapshot
Metabolic differences between white leghorns selected for high and low residual food consumption
inferredcites →https://doi.org/10.1093/bib/bbt086openalex-snapshot
Comparison of software packages for detecting differential expression in RNA-seq studies
inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
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BEDTools: a flexible suite of utilities for comparing genomic features
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Data-based filtering for replicated high-throughput transcriptome sequencing experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btt688openalex-snapshot
RNA-seq differential expression studies: more sequence or more replication?
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/jn/137.3.702openalex-snapshot
Carbohydrate and Lipid Metabolism in Farm Animals1
inferredcites →https://doi.org/10.1093/nar/gkm391openalex-snapshot
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
inferredcites →https://doi.org/10.1093/nar/gks1150openalex-snapshot
Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era
inferredcites →https://doi.org/10.1093/nar/gks804openalex-snapshot
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/ps/83.3.474openalex-snapshot
Low Feed Efficient Broilers Within a Single Genetic Line Exhibit Higher Oxidative Stress and Protein Expression in Breast Muscle with Lower Mitochondrial Complex Activity
inferredcites →https://doi.org/10.1093/ps/83.9.1518openalex-snapshot
Ornithine decarboxylase: haplotype structure and trait associations in White Leghorn chickens
inferredcites →https://doi.org/10.1093/ps/83.9.1602openalex-snapshot
Phenotypic selection for residual feed intake and its effect on humoral immune responses in growing layer hens
inferredcites →https://doi.org/10.1101/gr.079558.108openalex-snapshot
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
inferredcites →https://doi.org/10.1101/gr.086538.108openalex-snapshot
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
inferredcites →https://doi.org/10.1111/asj.12159openalex-snapshot
Analysis of biological networks and biological pathways associated with residual feed intake in beef cattle
inferredcites →https://doi.org/10.1111/j.1365-2052.2011.02182.xopenalex-snapshot
Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1152/ajpendo.1998.274.5.e867openalex-snapshot
Mechanisms contributing to angiotensin II regulation of body weight
inferredcites →https://doi.org/10.1152/ajpregu.00265.2004openalex-snapshot
Activation of the systemic and adipose renin-angiotensin system in rats with diet-induced obesity and hypertension
inferredcites →https://doi.org/10.1182/blood-2004-04-1570openalex-snapshot
Role of the renin-angiotensin system in primitive erythropoiesis in the chick embryo
inferredcites →https://doi.org/10.1186/1297-9686-42-25openalex-snapshot
Genetic properties of feed efficiency parameters in meat-type chickens
inferredcites →https://doi.org/10.1186/1297-9686-45-26openalex-snapshot
Assessment of residual body weight gain and residual intake and body weight gain as feed efficiency traits in the turkey (Meleagris gallopavo)
inferredcites →https://doi.org/10.1186/1471-2156-12-59openalex-snapshot
Improving the efficiency of feed utilization in poultry by selection. 1. Genetic parameters of anatomy of the gastro-intestinal tract and digestive efficiency
inferredcites →https://doi.org/10.1186/1471-2156-12-71openalex-snapshot
Improving the efficiency of feed utilization in poultry by selection. 2. Genetic parameters of excretion traits and correlations with anatomy of the gastro-intestinal tract and digestive efficiency
inferredcites →https://doi.org/10.1186/1471-2156-15-27openalex-snapshot
Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs
inferredcites →https://doi.org/10.1186/1471-2164-12-516openalex-snapshot
The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach
inferredcites →https://doi.org/10.1186/1471-2164-13-473openalex-snapshot
Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
inferredcites →https://doi.org/10.1186/1471-2164-14-386openalex-snapshot
ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains
inferredcites →https://doi.org/10.1186/1471-2164-14-453openalex-snapshot
Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction
inferredcites →https://doi.org/10.1186/1471-2164-14-843openalex-snapshot
Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition
inferredcites →https://doi.org/10.1186/1471-2164-15-1084openalex-snapshot
RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature
inferredcites →https://doi.org/10.1186/1471-2164-15-226openalex-snapshot
Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
inferredcites →https://doi.org/10.1186/1471-2164-15-675openalex-snapshot
Influence of RNA extraction methods and library selection schemes on RNA-seq data
inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot
Gene ontology analysis for RNA-seq: accounting for selection bias
inferredcites →https://doi.org/10.1186/gb-2011-12-2-r16openalex-snapshot
Genomewide characterization of non-polyadenylated RNAs
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/gb-2013-14-9-r95openalex-snapshot
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1210/en.142.4.1489openalex-snapshot
Angiotensin II Induces Skeletal Muscle Wasting through Enhanced Protein Degradation and Down-Regulates Autocrine Insulin-Like Growth Factor I
inferredcites →https://doi.org/10.1242/jcs.092098openalex-snapshot
FOXO3-induced reactive oxygen species are regulated by BCL2L11 (Bim) and SESN3
inferredcites →https://doi.org/10.1371/journal.pone.0028600openalex-snapshot
A Genome-Wide SNP Scan Reveals Novel Loci for Egg Production and Quality Traits in White Leghorn and Brown-Egg Dwarf Layers
inferredcites →https://doi.org/10.1371/journal.pone.0071763openalex-snapshot
Transcriptome Profile at Different Physiological Stages Reveals Potential Mode for Curly Fleece in Chinese Tan Sheep
inferredcites →https://doi.org/10.1371/journal.pone.0094270openalex-snapshot
Improved Annotation of 3′ Untranslated Regions and Complex Loci by Combination of Strand-Specific Direct RNA Sequencing, RNA-Seq and ESTs
inferredcites →https://doi.org/10.1371/journal.pone.0094650openalex-snapshot
Long-Read Sequencing of Chicken Transcripts and Identification of New Transcript Isoforms
inferredcites →https://doi.org/10.1371/journal.pone.0112896openalex-snapshot
Growth Hormone-Regulated mRNAs and miRNAs in Chicken Hepatocytes
inferredcites →https://doi.org/10.2527/2003.8151158xopenalex-snapshot
Quantitative trait locus detection in commercial broiler lines using candidate regions1
inferredcites →https://doi.org/10.2527/jas.2008-1268openalex-snapshot
Genetic associations of residual feed intake with serum insulin-like growth factor-I and leptin concentrations, meat quality, and carcass cross sectional fat area ratios in Duroc pigs
inferredcites →https://doi.org/10.2527/jas.2008-1345openalex-snapshot
Physiological basis for residual feed intake1
inferredcites →https://doi.org/10.2527/jas.2012-5687openalex-snapshot
Genetics of residual feed intake in growing pigs: Relationships with production traits, and nitrogen and phosphorus excretion traits1
inferredcites →https://doi.org/10.2527/jas1963.222486xopenalex-snapshot
Efficiency of Feed Use in Beef Cattle
inferredcites →https://doi.org/10.3382/ps.2012-02649openalex-snapshot
Genetic evaluation for growth, body composition, feed efficiency, and leg soundness
inferredcites →https://doi.org/10.3382/ps.2013-03085openalex-snapshot
Pedigree and genomic analyses of feed consumption and residual feed intake in laying hens
inferredcites →https://doi.org/10.3382/ps.2013-03302openalex-snapshot
Dissection of Koch's residual feed intake: Implications for selection
inferredcites →https://doi.org/10.3382/ps.2014-04178openalex-snapshot
Genetic analysis for dynamic changes of egg weight in 2 chicken lines
inferredcites →https://doi.org/10.7717/peerj.576openalex-snapshot
Error estimates for the analysis of differential expression from RNA-seq count data
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Genes Involved in the Cholecystokinin Receptor Signaling Map Were Differentially Expressed in the Jejunum of Steers with Variation in Residual Feed Intake
inferred← citeshttps://doi.org/10.1002/vms3.70074openalex-snapshot
Comparative Analysis of Runs of Homozygosity Islands in Indigenous and Commercial Chickens Revealed Candidate Loci for Disease Resistance and Production Traits
inferred← citeshttps://doi.org/10.1016/b978-0-12-809965-0.00022-7openalex-snapshot
Calcium Homeostasis and Eggshell Biomineralization in Female Chicken
inferred← citeshttps://doi.org/10.1016/j.aaf.2025.05.006openalex-snapshot
Decoding feed efficiency: Liver and intestinal transcriptomics in Larimichthys crocea fed a fishmeal-free diet
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.737915openalex-snapshot
Proteomic investigation of brain, liver and intestine in high feed intake and low feed intake Chinook salmon (Oncorhynchus tshawytscha)
inferred← citeshttps://doi.org/10.1016/j.jare.2026.03.021openalex-snapshot
Tissue-resolved molecular landscape reveals hepatic regulatory networks and metabolic mediators underlying feed efficiency in chickens
inferred← citeshttps://doi.org/10.1016/j.jgeb.2026.100809openalex-snapshot
High-SNP-density genes and functional pathway analysis reveal key regulators of feed conversion ratio in broiler chickens
inferred← citeshttps://doi.org/10.1016/j.psj.2020.10.028openalex-snapshot
Estimation of the genetic parameters of traits relevant to feed efficiency: result from broiler lines divergent for high or low abdominal fat content
inferred← citeshttps://doi.org/10.1016/j.psj.2022.101824openalex-snapshot
Comparative proteomics revealed duodenal metabolic function associated with feed efficiency in slow-growing chicken
inferred← citeshttps://doi.org/10.1016/j.psj.2022.102184openalex-snapshot
Comparative analysis of the characteristics of digestive organs in broiler chickens with different feed efficiencies
inferred← citeshttps://doi.org/10.1016/j.psj.2024.103783openalex-snapshot
Multi-tissue transcriptome profiling linked the association between tissue-specific circRNAs and the heterosis for feed intake and efficiency in chicken
inferred← citeshttps://doi.org/10.1016/j.psj.2024.104013openalex-snapshot
Novel insight into the feed conversion ratio in laying hens and construction of its prediction model
inferred← citeshttps://doi.org/10.1016/j.psj.2025.105711openalex-snapshot
Integrated multi-tissue transcriptomics reveals cross-tissue regulatory networks and hub genes regulating feed efficiency in aging chicken
inferred← citeshttps://doi.org/10.1016/j.psj.2025.105816openalex-snapshot
Understanding the impact of glycolysis and oxidative stress on residual feed intake in slow-growing chicken
inferred← citeshttps://doi.org/10.1016/j.psj.2026.106687openalex-snapshot
Identification of central regulators related to residual feed intake in Huainan chickens based on weighted gene co-expression network analysis
inferred← citeshttps://doi.org/10.1016/j.vas.2024.100357openalex-snapshot
Genes involved in the cholecystokinin receptor signaling map were differentially expressed in the jejunum of steers with variation in residual feed intake
inferred← citeshttps://doi.org/10.1038/s41522-019-0096-3openalex-snapshot
Host transcriptome and microbiome interaction modulates physiology of full-sibs broilers with divergent feed conversion ratio
inferred← citeshttps://doi.org/10.1038/s41588-025-02155-9openalex-snapshot
Genetic regulation of gene expression across multiple tissues in chickens
inferred← citeshttps://doi.org/10.1038/s41598-017-09299-7openalex-snapshot
RNA-Seq analysis on chicken taste sensory organs: An ideal system to study organogenesis
inferred← citeshttps://doi.org/10.1038/s41598-017-17269-2openalex-snapshot
Quantitative trait loci mapping for feed conversion efficiency in crucian carp (Carassius auratus)
inferred← citeshttps://doi.org/10.1038/s41598-018-20373-6openalex-snapshot
Identification of molecular pathways and candidate genes associated with cocks’ comb size trait by genome-wide transcriptome analysis
inferred← citeshttps://doi.org/10.1038/s41598-020-76234-8openalex-snapshot
RNA seq analyses of chicken reveals biological pathways involved in acclimation into different geographical locations
inferred← citeshttps://doi.org/10.1038/s41598-022-06528-6openalex-snapshot
Transcriptome analysis reveals the potential roles of long non-coding RNAs in feed efficiency of chicken
inferred← citeshttps://doi.org/10.1071/an24344openalex-snapshot
Effects of residual feed intake on the growth performance, carcass traits, meat quality, and serum biochemical parameters of Cherry Valley ducks
inferred← citeshttps://doi.org/10.1080/1828051x.2018.1507625openalex-snapshot
Gene expression profile analysis of residual feed intake for Isfahan native chickens using RNA-SEQ data
inferred← citeshttps://doi.org/10.1080/1828051x.2019.1634498openalex-snapshot
Divergent gene expression through PI3K/akt signalling pathway cause different models of hypertrophy growth in chicken
inferred← citeshttps://doi.org/10.1080/1828051x.2025.2596846openalex-snapshot
Transcriptome profiling of the pituitary gland reveals candidate genes for divergent feed efficiency in slow-growing chickens
inferred← citeshttps://doi.org/10.1093/cdn/nzz082openalex-snapshot
A Nutrigenomics Approach Using RNA Sequencing Technology to Study Nutrient–Gene Interactions in Agricultural Animals
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Genome‐wide re‐sequencing and transcriptome analysis reveal candidate genes associated with the pendulous comb phenotype in domestic chickens
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Rapid, broad‐scale gene expression evolution in experimentally harvested fish populations
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Quercetin Improving Lipid Metabolism by Regulating Lipid Metabolism Pathway of Ileum Mucosa in Broilers
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The mRNA-lncRNA landscape of multiple tissues uncovers key regulators and molecular pathways that underlie heterosis for feed intake and efficiency in laying chickens
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RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle
inferred← citeshttps://doi.org/10.1186/s12864-020-6713-yopenalex-snapshot
Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis
inferred← citeshttps://doi.org/10.1186/s12864-026-12734-7openalex-snapshot
Integrative transcriptomics and machine learning reveal key regulatory genes for meat quality traits in pigs
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Thyroid transcriptome analysis reveals different adaptive responses to cold environmental conditions between two chicken breeds
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Supplemental Effect of Lactobacillus Plantarum on the Growth Performance, Nutrient Digestibility, Gas Emission, Excreta Microbiota, and Meat Quality in Broilers
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Evaluation of Lactobacillus Plantarum Additive on Growth Performance, Excreta Microbiota, Nutrient Digestibility, Gas Emission, and Meat Quality in Ross308-Broilers
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Effect of Conjugated Linoleic Acid in Ovo Feeding to Broiler Embryos on Breast Muscle Transcriptome Changes
inferred← citeshttps://doi.org/10.17140/aftnsoj-6-171openalex-snapshot
Avianomics: The Beginning at the End
inferred← citeshttps://doi.org/10.2527/jas2017.1714openalex-snapshot
Gene expression profiling reveals candidate genes related to residual feed intake in duodenum of laying ducks1,2
inferred← citeshttps://doi.org/10.3382/ps/pey062openalex-snapshot
Feed efficiency measures and their relationships with production and meat quality traits in slower growing broilers
inferred← citeshttps://doi.org/10.3382/ps/pey506openalex-snapshot
Relevance of the intestinal health-related pathways to broiler residual feed intake revealed by duodenal transcriptome profiling
inferred← citeshttps://doi.org/10.3389/fgene.2019.01183openalex-snapshot
Transcriptome Analysis Identifies Candidate Genes and Pathways Associated With Feed Efficiency in Hu Sheep
inferred← citeshttps://doi.org/10.3389/fgene.2021.607719openalex-snapshot
Transcriptome Analysis Identifies Candidate Genes and Signaling Pathways Associated With Feed Efficiency in Xiayan Chicken
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Characterization and Duodenal Transcriptome Analysis of Chinese Beef Cattle With Divergent Feed Efficiency Using RNA-Seq
inferred← citeshttps://doi.org/10.3389/fgene.2023.1113411openalex-snapshot
Analysis of liver miRNA in Hu sheep with different residual feed intake
inferred← citeshttps://doi.org/10.3389/fvets.2022.904698openalex-snapshot
Cecal Microbial Hydrogen Cycling Potential Is Linked to Feed Efficiency Phenotypes in Chickens
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Jejunal Transcriptomic Profiling for Differences in Feed Conversion Ratio in Slow-Growing Chickens
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Transcriptome Analysis of Breast Muscle Reveals Pathways Related to Protein Deposition in High Feed Efficiency of Native Turkeys
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The Omics Revolution in Understanding Chicken Reproduction: A Comprehensive Review
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Emerging Roles of Non-Coding RNAs in the Feed Efficiency of Livestock Species
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Exploring Genomic Variants Related to Residual Feed Intake in Local and Commercial Chickens by Whole Genomic Resequencing
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Transcriptomic Profiles of Brain Provide Insights into Molecular Mechanism of Feed Conversion Efficiency in Crucian Carp (Carassius auratus)
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Expression of genes related to lipid transport in meat-type ducks divergent for low or high residual feed intake
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Additional file 1 of Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.12109611openalex-snapshot
Additional file 6 of Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis
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