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Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree
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The phylogeny of echinoderm classes based on mitochondrial gene arrangements
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Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
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Phylogeny of Nematoda and Cephalorhyncha Derived from 18S rDNA
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Mitochondrial Genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): Comparison of Gene Arrangement and tRNA Genes with Halocynthia roretzi Mitochondrial Genome
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Complete mtDNA of Ciona intestinalis Reveals Extensive Gene Rearrangement and the Presence of an atp8 and an Extra trnM Gene in Ascidians
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Molecular Mechanisms for the Variation of Mitochondrial Gene Content and Gene Arrangement Among Chigger Mites of the Genus Leptotrombidium (Acari: Acariformes)
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Rampant gene rearrangement and haplotype hypervariation among nematode mitochondrial genomes
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Phylogeny of Molting Protostomes (Ecdysozoa) as Inferred from 18S and 28S rRNA Gene Sequences
inferredcites →https://doi.org/10.1016/j.gene.2004.06.041openalex-snapshot
Analysis of a conserved duplicated tRNA gene in the mitochondrial genome of blowflies
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The mitochondrial genome of the Japanese freshwater crab, Geothelphusa dehaani (Crustacea: Brachyura): Evidence for its evolution via gene duplication
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Gene recruitment – A common mechanism in the evolution of transfer RNA gene families
inferredcites →https://doi.org/10.1016/j.ympev.2006.03.007openalex-snapshot
The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa
inferredcites →https://doi.org/10.1016/j.ympev.2009.01.011openalex-snapshot
MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies
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Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis
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The mitochondrial genome of the onychophoran Opisthopatus cinctipes (Peripatopsidae) reflects the ancestral mitochondrial gene arrangement of Panarthropoda and Ecdysozoa
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Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea)
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/j.ympev.2013.02.016openalex-snapshot
Molecular phylogeny of kinorhynchs
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.002openalex-snapshot
A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
inferredcites →https://doi.org/10.1016/j.ympev.2014.08.001openalex-snapshot
A transcriptome approach to ecdysozoan phylogeny
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Animal Mitochondrial DNA: An Extreme Example of Genetic Economy
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Organization, Structure, and Evolution of Mammalian Mitochondrial Genes
inferredcites →https://doi.org/10.1016/s0074-7696(08)62066-5openalex-snapshot
Animal Mitochondrial DNA: Structure and Evolution
inferredcites →https://doi.org/10.1038/376163a0openalex-snapshot
Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements
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Broad phylogenomic sampling improves resolution of the animal tree of life
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Armored kinorhynch-like scalidophoran animals from the early Cambrian
inferredcites →https://doi.org/10.1073/pnas.0400941101openalex-snapshot
The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes
inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot
An Approximately Unbiased Test of Phylogenetic Tree Selection
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Evidence for Multiple Reversals of Asymmetric Mutational Constraints during the Evolution of the Mitochondrial Genome of Metazoa, and Consequences for Phylogenetic Inferences
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/18.3.502openalex-snapshot
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
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CREx: inferring genomic rearrangements based on common intervals
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp368openalex-snapshot
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
inferredcites →https://doi.org/10.1093/bioinformatics/btr316openalex-snapshot
FACIL: Fast and Accurate Genetic Code Inference and Logo
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
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Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
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Selfish Mitochondrial DNA Proliferates and Diversifies in Small, but not Large, Experimental Populations ofCaenorhabditis briggsae
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A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.
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Germline Bottlenecks and the Evolutionary Maintenance of Mitochondrial Genomes
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Mytilus Mitochondrial DNA Contains a Functional Gene for a tRNASer(UCN) With a Dihydrouridine Arm-Replacement Loop and a pseudo-tRNASer(UCN) Gene
inferredcites →https://doi.org/10.1093/icb/icj056openalex-snapshot
Lophotrochozoan mitochondrial genomes
inferredcites →https://doi.org/10.1093/molbev/msh090openalex-snapshot
Complete Sequences of the Highly Rearranged Molluscan Mitochondrial Genomes of the Scaphopod Graptacme eborea and the Bivalve Mytilus edulis
inferredcites →https://doi.org/10.1093/molbev/msh229openalex-snapshot
Identification of Chaetognaths as Protostomes Is Supported by the Analysis of Their Mitochondrial Genome
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Mitochondrial Genomes of Two Demosponges Provide Insights into An Early Stage of Animal Evolution
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A Bayesian Compound Stochastic Process for Modeling Nonstationary and Nonhomogeneous Sequence Evolution
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Hypervariability of Ascidian Mitochondrial Gene Order: Exposing the Myth of Deuterostome Organelle Genome Stability
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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
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Purifying Selection in Mammalian Mitochondrial Protein-Coding Genes Is Highly Effective and Congruent with Evolution of Nuclear Genes
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkl044openalex-snapshot
GenDecoder: genetic code prediction for metazoan mitochondria
inferredcites →https://doi.org/10.1093/nar/gkn772openalex-snapshot
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
inferredcites →https://doi.org/10.1093/nar/gkq291openalex-snapshot
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
inferredcites →https://doi.org/10.1093/nar/gkr1131openalex-snapshot
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
inferredcites →https://doi.org/10.1093/nar/gkr995openalex-snapshot
GenomeView: a next-generation genome browser
inferredcites →https://doi.org/10.1093/nar/gkt289openalex-snapshot
OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syt022openalex-snapshot
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
inferredcites →https://doi.org/10.1111/j.0962-1075.2004.00447.xopenalex-snapshot
The mitochondrial genomes of soft ticks have an arrangement of genes that has remained unchanged for over 400 million years
inferredcites →https://doi.org/10.1111/j.1525-142x.2006.00123.xopenalex-snapshot
Mitogenomics and phylogenomics reveal priapulid worms as extant models of the ancestral Ecdysozoan
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The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis
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The mitochondrial genome structure of Xenoturbella bocki(phylum Xenoturbellida) is ancestral within the deuterostomes
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Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida
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Phylogeny and mitochondrial gene order variation in Lophotrochozoa in the light of new mitogenomic data from Nemertea
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Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
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The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships
inferredcites →https://doi.org/10.1186/1471-2164-15-930openalex-snapshot
Gene rearrangements in gekkonid mitochondrial genomes with shuffling, loss, and reassignment of tRNA genes
inferredcites →https://doi.org/10.1371/journal.pone.0133440openalex-snapshot
Phylogeny of Kinorhyncha Based on Morphology and Two Molecular Loci
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
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Similar Efficacies of Selection Shape Mitochondrial and Nuclear Genes in Both Drosophila melanogaster and Homo sapiens
inferredcites →https://doi.org/10.2108/zs140011openalex-snapshot
Two Kinorhynch Species (Cyclorhagida, Echinoderidae,Echinoderes) Show Different Distribution PatternsAcross Tsugaru Strait, Northern Japan
inferredcites →https://doi.org/10.3109/19401736.2014.958723openalex-snapshot
The complete mitochondrial genome of the orange-spotted grouper Epinephelus coioides (Perciformes, Serranidae)
inferredcites →https://doi.org/10.3109/19401736.2014.982567openalex-snapshot
Description of the mitogenome of Gansu mole ( Scapanulus oweni )
inferredcites →https://doi.org/10.3109/19401736.2014.982599openalex-snapshot
Complete mitochondrial genome of the kawakawa tuna Euthynnus affinis
inferredcites →https://doi.org/10.3109/19401736.2015.1041132openalex-snapshot
The complete mitochondrial genome sequence of Tylototriton taliangensis (Amphibia: Caudata)
inferredcites →https://doi.org/10.3354/meps127065openalex-snapshot
Deep-sea meiofauna communities in Antarctica:structural analysis and relation with the environment
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.jcz.2022.11.001zenodo-depositor-declared
Revision of an Arctic kinorhynch species: Echinoderes svetlanae and E. tubilak are junior synonyms of E. remanei
inferred← citeshttps://doi.org/10.3897/imafungus.17.203360zenodo-depositor-declared
Mitochondrial genomic variation, evolutionary dynamics, and phylogeny of forest-associated Phytophthora species in the Qinling Mountains of China
inferred← citeshttps://doi.org/10.1016/j.aspen.2019.07.013openalex-snapshot
Complete mitochondrial genome of Dacus conopsoides (Insecta: Tephritidae) with tRNA gene duplication and molecular phylogeny of Dacini tribe
inferred← citeshttps://doi.org/10.1016/j.dib.2020.105284openalex-snapshot
Bioinformatic tools for tRNA gene analyses in mitochondrial DNA sequence data
inferred← citeshttps://doi.org/10.1016/j.jcz.2019.06.003openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.watbs.2022.100033openalex-snapshot
Evolutionary rates of mitochondrial sequences and gene orders in Spirurina (Nematoda) are episodic but synchronised
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106710openalex-snapshot
Hidden cases of tRNA gene duplication and remolding in mitochondrial genomes of amphipods
inferred← citeshttps://doi.org/10.1093/icb/icx072openalex-snapshot
Current Understanding of Ecdysozoa and its Internal Phylogenetic Relationships
inferred← citeshttps://doi.org/10.1134/s0006297925602114openalex-snapshot
Gene Order in Mitochondrial DNA Affects Abundance of their Transcripts (A Case of Marine Nematodes)
inferred← citeshttps://doi.org/10.1134/s1022795424700911openalex-snapshot
Misidentified Mitogenomes of Two Lycodes Species (Perciformes: Zoarcidae) in GenBank
inferred← citeshttps://doi.org/10.1186/s13071-020-3926-5openalex-snapshot
The complete mitochondrial genome of a parasite at the animal-fungal boundary
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