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Sequencing of complete mitochondrial genomes confirms synonymization of Hyalomma asiaticum asiaticum and kozlovi, and advances phylogenetic hypotheses for the Ixodidae

https://doi.org/10.1371/journal.pone.0197524
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Outgoing claims: the papers this work cites, builds on, or argues with.

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How reticulated are species?
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Systematics and Biogeography of Hard Ticks, a Total Evidence Approach
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Phylogenetic Relationships among Tick Subfamilies (Ixodida: Ixodidae: Argasidae) Based on the 18S Nuclear rDNA Gene
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Phylogeny of the Hard Ticks (Ixodidae) Inferred from 18S rRNA Indicates That the GenusAponommaIs Paraphyletic
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The genus Hyalomma. XI. Redescription of all parasitic stages of H. (Euhyalomma) asiaticum (Acari: Ixodidae) and notes on its biology
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raxmlGUI: a graphical front-end for RAxML
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Phylogenetic analysis of the mitochondrial genomes and nuclear rRNA genes of ticks reveals a deep phylogenetic structure within the genus Haemaphysalis and further elucidates the polyphyly of the genus Amblyomma with respect to Amblyomma sphenodonti and Amblyomma elaphense
inferredcites →https://doi.org/10.1016/j.ttbdis.2013.10.009openalex-snapshot
Molecular phylogeny of soft ticks (Ixodida: Argasidae) inferred from mitochondrial genome and nuclear rRNA sequences
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Next-generation sequencing as means to retrieve tick systematic markers, with the focus on Nuttalliella namaqua (Ixodoidea: Nuttalliellidae)
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The mitochondrial genome of the lone star tick (Amblyomma americanum)
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Ancestral reconstruction of tick lineages
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Sequencing and comparative analysis of the Amblyomma sculptum mitogenome
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Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution
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Phylogenetic analysis of ticks (Acari: Ixodida) using mitochondrial genomes and nuclear rRNA genes indicates that the genus Amblyomma is polyphyletic
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Effects of tectonics and large scale climatic changes on the evolutionary history of Hyalomma ticks
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The Argasidae, Ixodidae and Nuttalliellidae (Acari: Ixodida): A World List of Valid Tick Names
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Phylogeny of hard- and soft-tick taxa (Acari: Ixodida) based on mitochondrial 16S rDNA sequences.
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Between Two Extremes: Mitochondrial DNA is neither the Panacea nor the Nemesis of Phylogenetic and Taxonomic Inference
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inferredcites →https://doi.org/10.1093/bioinformatics/btl529openalex-snapshot
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
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ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gki366openalex-snapshot
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
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The EMBL-EBI bioinformatics web and programmatic tools framework
inferredcites →https://doi.org/10.1093/nar/gkw256openalex-snapshot
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
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Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/j.0962-1075.2004.00447.xopenalex-snapshot
The mitochondrial genomes of soft ticks have an arrangement of genes that has remained unchanged for over 400 million years
inferredcites →https://doi.org/10.1111/j.1096-0031.2000.tb00349.xopenalex-snapshot
Systematics and Biogeography of Hard Ticks, a Total Evidence Approach
inferredcites →https://doi.org/10.1128/cmr.00008-13openalex-snapshot
Laboratory Identification of Arthropod Ectoparasites
inferredcites →https://doi.org/10.1146/annurev-ento-011613-162007openalex-snapshot
Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny
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The Argasidae, Ixodidae and Nuttalliellidae (Acari: Ixodida) of the world: a list of valid species names
inferredcites →https://doi.org/10.11646/zootaxa.3816.1.1openalex-snapshot
Ticks of Australia. The species that infest domestic animals and humans
inferredcites →https://doi.org/10.1186/1471-2105-9-212openalex-snapshot
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
inferredcites →https://doi.org/10.1186/1471-2148-11-315openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2148-7-s1-s4openalex-snapshot
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
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inferredcites →https://doi.org/10.1186/1471-2164-14-s2-s6openalex-snapshot
Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery
inferredcites →https://doi.org/10.1186/s12864-017-4237-xopenalex-snapshot
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Sequencing of the complete mitochondrial genome of a fish-parasitic flatworm Paratetraonchoides inermis (Platyhelminthes: Monogenea): tRNA gene arrangement reshuffling and implications for phylogeny
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Physician's Guide to Arthropods of Medical Importance
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Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes
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Nuttalliella namaqua: A Living Fossil and Closest Relative to the Ancestral Tick Lineage: Implications for the Evolution of Blood-Feeding in Ticks
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Tick-Box for 3′-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila
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The Mitochondrial Genomes of Nuttalliella namaqua (Ixodoidea: Nuttalliellidae) and Argas africolumbae (Ixodoidae: Argasidae): Estimation of Divergence Dates for the Major Tick Lineages and Reconstruction of Ancestral Blood-Feeding Characters
inferredcites →https://doi.org/10.1371/journal.pone.0156757openalex-snapshot
Next-Generation Mitogenomics: A Comparison of Approaches Applied to Caecilian Amphibian Phylogeny
inferredcites →https://doi.org/10.1371/journal.pone.0169749openalex-snapshot
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae)
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Sequencing of the complete mitochondrial genomes of eight freshwater snail species exposes pervasive paraphyly within the Viviparidae family (Caenogastropoda)
inferredcites →https://doi.org/10.1385/1-59259-192-2:71openalex-snapshot
DNASTAR's Lasergene Sequence Analysis Software
inferredcites →https://doi.org/10.14411/eje.2017.052openalex-snapshot
Tandem duplication of two tRNA genes in the mitochondrial genome of Tagiades vajuna (Lepidoptera: Hesperiidae)
inferredcites →https://doi.org/10.2298/abs1304463jopenalex-snapshot
Introgression evidence and phylogenetic relationships among three (Para)Misgurnus species as revealed by mitochondrial and nuclear DNA markers
inferredcites →https://doi.org/10.3347/kjp.2015.53.3.361openalex-snapshot
Morphological Characteristics of Normal and Gynandromorphic Hyalomma asiaticum Schulze and Schlottke, 1930
inferredcites →https://doi.org/10.7150/ijbs.6081openalex-snapshot
Complete Mitochondrial Genome Sequence Data Provides Genetic Evidence That the Brown Dog Tick Rhipicephalus sanguineus (Acari: Ixodidae) Represents a Species Complex

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