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Monte Carlo simulations of microtubule arrays: The critical roles of rescue transitions, the cell boundary, and tubulin concentration in shaping microtubule distributions

https://doi.org/10.1371/journal.pone.0197538

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/aic.690420524openalex-snapshot

Spectral analysis of microtubule assembly dynamics

inferredcites →https://doi.org/10.1007/bf02797111openalex-snapshot

Some thoughts on the partitioning of tubulin between monomer and polymer under conditions of dynamic instability

inferredcites →https://doi.org/10.1016/0022-5193(70)90129-3openalex-snapshot

Size distribution of protein polymers

inferredcites →https://doi.org/10.1016/0092-8674(78)90335-5openalex-snapshot

Radioimmunoassay for tubulin: a quantitative comparison of the tubulin content of different established tissue culture cells and tissues

inferredcites →https://doi.org/10.1016/b978-0-12-397924-7.00003-0openalex-snapshot

Quantitative Analysis of Microtubule Self-assembly Kinetics and Tip Structure

inferredcites →https://doi.org/10.1016/j.ceb.2009.11.001openalex-snapshot

Microtubule-severing enzymes

inferredcites →https://doi.org/10.1016/j.ceb.2012.09.006openalex-snapshot

Microtubule catastrophe and rescue

inferredcites →https://doi.org/10.1016/j.cell.2011.10.037openalex-snapshot

Depolymerizing Kinesins Kip3 and MCAK Shape Cellular Microtubule Architecture by Differential Control of Catastrophe

inferredcites →https://doi.org/10.1016/j.cub.2010.04.040openalex-snapshot

Cell-Length-Dependent Microtubule Accumulation during Polarization

inferredcites →https://doi.org/10.1016/j.cub.2012.06.068openalex-snapshot

Estimating the Microtubule GTP Cap Size In Vivo

inferredcites →https://doi.org/10.1016/j.cub.2013.05.059openalex-snapshot

Evolving Tip Structures Can Explain Age-Dependent Microtubule Catastrophe

inferredcites →https://doi.org/10.1016/j.devcel.2010.07.016openalex-snapshot

CLASP Promotes Microtubule Rescue by Recruiting Tubulin Dimers to the Microtubule

inferredcites →https://doi.org/10.1016/j.gde.2011.01.003openalex-snapshot

Phenotypic spectrum of the tubulin-related disorders and functional implications of disease-causing mutations

inferredcites →https://doi.org/10.1016/j.jsb.2011.07.009openalex-snapshot

plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics

inferredcites →https://doi.org/10.1016/s0006-3495(95)79953-2openalex-snapshot

Kinetics of microtubule catastrophe assessed by probabilistic analysis

inferredcites →https://doi.org/10.1038/nature20413openalex-snapshot

Decoding ALS: from genes to mechanism

inferredcites →https://doi.org/10.1038/ncb3188openalex-snapshot

Microtubule-associated proteins control the kinetics of microtubule nucleation

inferredcites →https://doi.org/10.1038/nmeth.1493openalex-snapshot

Analysis of microtubule dynamic instability using a plus-end growth marker

inferredcites →https://doi.org/10.1038/nrm4084openalex-snapshot

Control of microtubule organization and dynamics: two ends in the limelight

inferredcites →https://doi.org/10.1038/sj.emboj.7600629openalex-snapshot

Mini spindles, the XMAP215 homologue, suppresses pausing of interphase microtubules in Drosophila

inferredcites →https://doi.org/10.1073/pnas.0308205100openalex-snapshot

Centrosome maturation: Measurement of microtubule nucleation throughout the cell cycle by using GFP-tagged EB1

inferredcites →https://doi.org/10.1073/pnas.84.24.9040openalex-snapshot

Differential turnover of tyrosinated and detyrosinated microtubules.

inferredcites →https://doi.org/10.1074/jbc.273.15.9285openalex-snapshot

Purification of a WD Repeat Protein, EMAP, That Promotes Microtubule Dynamics through an Inhibition of Rescue

inferredcites →https://doi.org/10.1083/jcb.102.6.2023openalex-snapshot

Dynamics of microtubule depolymerization in monocytes.

inferredcites →https://doi.org/10.1083/jcb.104.2.277openalex-snapshot

Dynamic and stable populations of microtubules in cells.

inferredcites →https://doi.org/10.1083/jcb.105.5.2203openalex-snapshot

A microtubule-associated protein from Xenopus eggs that specifically promotes assembly at the plus-end.

inferredcites →https://doi.org/10.1083/jcb.107.4.1437openalex-snapshot

Dynamic instability of individual microtubules analyzed by video light microscopy: rate constants and transition frequencies.

inferredcites →https://doi.org/10.1083/jcb.107.6.2223openalex-snapshot

Real-time observations of microtubule dynamic instability in living cells.

inferredcites →https://doi.org/10.1083/jcb.135.1.201openalex-snapshot

Microtubule dynamics at the G2/M transition: abrupt breakdown of cytoplasmic microtubules at nuclear envelope breakdown and implications for spindle morphogenesis.

inferredcites →https://doi.org/10.1083/jcb.200204109openalex-snapshot

Reorganization of the microtubule array in prophase/prometaphase requires cytoplasmic dynein-dependent microtubule transport

inferredcites →https://doi.org/10.1083/jcb.200208058openalex-snapshot

Cytoplasmic linker proteins promote microtubule rescue in vivo

inferredcites →https://doi.org/10.1083/jcb.200807179openalex-snapshot

Mammalian end binding proteins control persistent microtubule growth

inferredcites →https://doi.org/10.1083/jcb.69.3.599openalex-snapshot

Properties of tubulin in unfertilized sea urchin eggs. Quantitation and characterization by the colchicine-binding reaction.

inferredcites →https://doi.org/10.1088/1361-648x/aa8670openalex-snapshot

Dynamics of microtubules: highlights of recent computational and experimental investigations

inferredcites →https://doi.org/10.1091/mbc.10.1.105openalex-snapshot

Dissociation of the Tubulin-sequestering and Microtubule Catastrophe-promoting Activities of Oncoprotein 18/Stathmin

inferredcites →https://doi.org/10.1091/mbc.10.4.947openalex-snapshot

Taxol Suppresses Dynamics of Individual Microtubules in Living Human Tumor Cells

inferredcites →https://doi.org/10.1091/mbc.4.10.1035openalex-snapshot

How the transition frequencies of microtubule dynamic instability (nucleation, catastrophe, and rescue) regulate microtubule dynamics in interphase and mitosis: analysis using a Monte Carlo computer simulation.

inferredcites →https://doi.org/10.1091/mbc.8.6.973openalex-snapshot

Nanomolar concentrations of nocodazole alter microtubule dynamic instability in vivo and in vitro.

inferredcites →https://doi.org/10.1091/mbc.e02-09-0607openalex-snapshot

Organization and Dynamics of Growing Microtubule Plus Ends during Early Mitosis

inferredcites →https://doi.org/10.1091/mbc.e09-02-0140openalex-snapshot

Stathmin Regulates Centrosomal Nucleation of Microtubules and Tubulin Dimer/Polymer Partitioning

inferredcites →https://doi.org/10.1091/mbc.e14-11-1514openalex-snapshot

γ-Tubulin complexes in microtubule nucleation and beyond

inferredcites →https://doi.org/10.1091/mbc.e16-08-0567openalex-snapshot

Mechanisms of kinetic stabilization by the drugs paclitaxel and vinblastine

inferredcites →https://doi.org/10.1103/physreve.70.032901openalex-snapshot

Steady states of a microtubule assembly in a confined geometry

inferredcites →https://doi.org/10.1242/jcs.02531openalex-snapshot

Quantification of microtubule nucleation, growth and dynamics in wound-edge cells

inferredcites →https://doi.org/10.1242/jcs.03240openalex-snapshot

Insights into cytoskeletal behavior from computational modeling of dynamic microtubules in a cell-like environment

inferredcites →https://doi.org/10.1242/jcs.107.4.881openalex-snapshot

Quantitative determination of the proportion of microtubule polymer present during the mitosis-interphase transition

inferredcites →https://doi.org/10.1242/jcs.109.12.2885openalex-snapshot

Cell cycle-dependent phosphorylation of the 77 kDa echinoderm microtubule-associated protein (EMAP) in vivo and association with the p34cdc2 kinase

inferredcites →https://doi.org/10.1242/jcs.115.17.3527openalex-snapshot

Life cycle of MTs: persistent growth in the cell interior, asymmetric transition frequencies and effects of the cell boundary

inferredcites →https://doi.org/10.1242/jcs.151753openalex-snapshot

The role of mitotic kinases in coupling the centrosome cycle with the assembly of the mitotic spindle

inferredcites →https://doi.org/10.4161/cc.6.17.4633openalex-snapshot

The Tubulin Code

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3305549openalex-extracted

A Synthetic Morphogenic Perceptory Cell

inferred← citeshttps://doi.org/10.1007/s12038-022-00255-wopenalex-snapshot

Effects of length-dependent positive feedback on length distributions of microtubules undergoing hydrolysis

inferred← citeshttps://doi.org/10.1016/j.bpj.2021.12.028openalex-snapshot

Effects of random hydrolysis on biofilament length distributions in a shared subunit pool

inferred← citeshttps://doi.org/10.1016/j.bpj.2023.11.2816openalex-snapshot

Detyrosination enrichment on microtubule subsets is established by the interplay between a stochastically acting enzyme and microtubule stability

inferred← citeshttps://doi.org/10.1016/j.ceb.2018.10.003openalex-snapshot

Autoregulation and repair in microtubule homeostasis

inferred← citeshttps://doi.org/10.1016/j.cub.2023.10.068openalex-snapshot

Interplay between stochastic enzyme activity and microtubule stability drives detyrosination enrichment on microtubule subsets

inferred← citeshttps://doi.org/10.1016/j.physa.2021.125929openalex-snapshot

Multifractality nature of microtubule dynamic instability process

inferred← citeshttps://doi.org/10.1038/s41467-021-21679-2openalex-snapshot

A self-organized synthetic morphogenic liposome responds with shape changes to local light cues

inferred← citeshttps://doi.org/10.1080/15384047.2019.1638678openalex-snapshot

Reorganization of paclitaxel-stabilized microtubule arrays at mitotic entry: roles of depolymerizing kinesins and severing proteins

inferred← citeshttps://doi.org/10.1088/1478-3975/acc301openalex-snapshot

Computer simulation reveals the effect of severing enzymes on dynamic and stabilized microtubules

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