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Characterization of pig saliva as the major natural habitat of Streptococcus suis by analyzing oral, fecal, vaginal, and environmental microbiota

https://doi.org/10.1371/journal.pone.0215983
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Initial steps of the pathogenesis of the infection caused by Streptococcus suis : fighting against nonspecific defenses
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A Mathematical Theory of Communication
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Characterization of Streptococcus suis Isolates from Slaughter Swine
inferredcites →https://doi.org/10.1016/j.tvjl.2014.01.024openalex-snapshot
Characterization of the oral microbiota of healthy cats using next-generation sequencing
inferredcites →https://doi.org/10.1016/j.vetmic.2003.09.018openalex-snapshot
Epidemiology of Streptococcus suis serotype 5 infection in a pig herd with and without clinical disease
inferredcites →https://doi.org/10.1016/j.vetmic.2015.03.014openalex-snapshot
The pig gut microbial diversity: Understanding the pig gut microbial ecology through the next generation high throughput sequencing
inferredcites →https://doi.org/10.1016/s0378-1135(01)00376-5openalex-snapshot
Experimental airborne transmission of Streptococcus suis capsular type 2 in pigs
inferredcites →https://doi.org/10.1016/s1473-3099(07)70001-4openalex-snapshot
Streptococcus suis: an emerging zoonotic pathogen
inferredcites →https://doi.org/10.1038/163688a0openalex-snapshot
Measurement of Diversity
inferredcites →https://doi.org/10.1038/emi.2014.45openalex-snapshot
Streptococcus suis , an important pig pathogen and emerging zoonotic agent—an update on the worldwide distribution based on serotyping and sequence typing
inferredcites →https://doi.org/10.1038/ismej.2016.77openalex-snapshot
Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.161openalex-snapshot
A reference gene catalogue of the pig gut microbiome
inferredcites →https://doi.org/10.1038/s41522-017-0031-4openalex-snapshot
Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbiota in patients with periodontitis and dental caries
inferredcites →https://doi.org/10.1038/s41598-017-18677-0openalex-snapshot
Composition of salivary microbiota in elderly subjects
inferredcites →https://doi.org/10.1086/527385openalex-snapshot
Streptococcus suis Meningitis in Adults in Vietnam
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
inferredcites →https://doi.org/10.1093/nar/gkx295openalex-snapshot
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
inferredcites →https://doi.org/10.1099/ijs.0.067116-0openalex-snapshot
Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp. nov.
inferredcites →https://doi.org/10.1111/j.2041-1014.2010.00587.xopenalex-snapshot
Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing
inferredcites →https://doi.org/10.1128/aem.04167-13openalex-snapshot
Detection of Streptococcus suis in Bioaerosols of Swine Confinement Buildings
inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/iai.59.9.3156-3162.1991openalex-snapshot
Identification of two proteins associated with virulence of Streptococcus suis type 2
inferredcites →https://doi.org/10.1128/jcm.35.6.1595-1596.1997openalex-snapshot
Demonstration of vertical transmission of Streptococcus suis in swine by genomic fingerprinting
inferredcites →https://doi.org/10.1128/jcm.43.11.5721-5732.2005openalex-snapshot
Defining the Normal Bacterial Flora of the Oral Cavity
inferredcites →https://doi.org/10.1159/000448662openalex-snapshot
Occlusal Caries: Biological Approach for Its Diagnosis and Management
inferredcites →https://doi.org/10.1186/1751-0147-42-303openalex-snapshot
Experimental Infection of Conventional Pigs with Streptococcus suis serotype 2 by Aerosolic Exposure
inferredcites →https://doi.org/10.1186/gb-2011-12-6-r60openalex-snapshot
Metagenomic biomarker discovery and explanation
inferredcites →https://doi.org/10.1292/jvms.18-0083openalex-snapshot
Development of PCR for identifying Streptococcus parasuis, a close relative of Streptococcus suis
inferredcites →https://doi.org/10.1371/journal.pone.0005973openalex-snapshot
Streptococcus suis, an Important Cause of Adult Bacterial Meningitis in Northern Vietnam
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0057923openalex-snapshot
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
inferredcites →https://doi.org/10.1371/journal.pone.0114804openalex-snapshot
IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries
inferredcites →https://doi.org/10.1371/journal.pone.0131468openalex-snapshot
Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing
inferredcites →https://doi.org/10.2460/ajvr.79.9.941openalex-snapshot
Assessment of pig saliva as a Streptococcus suis reservoir and potential source of infection on farms by use of a novel quantitative polymerase chain reaction assay
inferredcites →https://doi.org/10.26444/aaem/79813openalex-snapshot
Streptococcus suis: a re-emerging pathogen associated with occupational exposure to pigs or pork products. Part I – Epidemiology
inferredcites →https://doi.org/10.3201/eid1206.051194openalex-snapshot
HumanStreptococcus suisOutbreak, Sichuan, China
inferredcites →https://doi.org/10.3201/eid1401.070568openalex-snapshot
in Humans, Thailand
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/ange.202103990openalex-snapshot
Discovery of Oligosaccharide Antigens for Semi‐Synthetic Glycoconjugate Vaccine Leads against Streptococcus suis Serotypes 2, 3, 9 and 14**
inferred← citeshttps://doi.org/10.1002/anie.202103990openalex-snapshot
Discovery of Oligosaccharide Antigens for Semi‐Synthetic Glycoconjugate Vaccine Leads against Streptococcus suis Serotypes 2, 3, 9 and 14**
inferred← citeshttps://doi.org/10.1002/slct.202300263openalex-snapshot
Total Synthesis of Streptococcus suis Serotype 8 Capsular Polysaccharide Repeating Unit
inferred← citeshttps://doi.org/10.1016/b978-0-443-41535-7.00019-6openalex-snapshot
Selected porcine bacterial diseases
inferred← citeshttps://doi.org/10.1016/j.animal.2024.101404openalex-snapshot
Nose-clip use in semi-free ranging pigs reduces rooting without disrupting affiliative behaviour or causing prolonged stress
inferred← citeshttps://doi.org/10.1016/j.aninu.2026.05.002openalex-snapshot
Liquid feeding of miscellaneous grain and meal diets with enzymes improved growth performance and intestinal health of growing pigs
inferred← citeshttps://doi.org/10.1016/j.meatsci.2022.108949openalex-snapshot
The successful use of -omic technologies to achieve the ‘One Health’ concept in meat producing animals
inferred← citeshttps://doi.org/10.1016/j.onehlt.2021.100254openalex-snapshot
An epidemiological study of Streptococcus suis prevalence among swine at industrial swine farms in Northern Vietnam
inferred← citeshttps://doi.org/10.1016/j.onehlt.2025.101098openalex-snapshot
Streptococcus suis: Epidemiology and resistance evolution of an emerging zoonotic bacteria
inferred← citeshttps://doi.org/10.1016/j.prevetmed.2024.106237openalex-snapshot
The use of oral fluids and sock samples for monitoring key pathogens in pig populations for surveillance purposes
inferred← citeshttps://doi.org/10.1016/j.rvsc.2026.106231openalex-snapshot
Advances in porcine salivaomics: A review of biomarkers, diagnostics, and research approaches
inferred← citeshttps://doi.org/10.1016/j.syapm.2024.126538openalex-snapshot
Streptococcus suis subsp. hashimotonensis subsp. nov.: Lancefield group A antigen–positive organisms isolated from human clinical specimens and wild boar oral cavity samples
inferred← citeshttps://doi.org/10.1038/s41597-025-04413-1openalex-snapshot
Metagenome-assembled microbial genomes (n = 3,448) of the oral microbiomes of Tibetan and Duroc pigs
inferred← citeshttps://doi.org/10.1038/s41598-023-33175-2openalex-snapshot
Maternal and/or post-weaning supplementation with Bacillus altitudinis spores modulates the microbial composition of colostrum, digesta and faeces in pigs
inferred← citeshttps://doi.org/10.1038/s41598-024-54269-5openalex-snapshot
A comparative study of the bacterial diversity and composition of nursery piglets’ oral fluid, feces, and housing environment
inferred← citeshttps://doi.org/10.1093/jas/skab307openalex-snapshot
Short-chain fatty acid administration via water acidifier improves feed efficiency and modulates fecal microbiota in weaned piglets
inferred← citeshttps://doi.org/10.1093/tas/txad126openalex-snapshot
Metabolic insights and background from naturally affected pigs during Streptococcus suis outbreaks
inferred← citeshttps://doi.org/10.1099/ijsem.0.006354openalex-snapshot
Streptococcus hohhotensis sp. nov., isolated from the breast milk of a healthy woman
inferred← citeshttps://doi.org/10.1099/jmm.0.001339openalex-snapshot
Pathogenicity and drug resistance of animal streptococci responsible for human infections
inferred← citeshttps://doi.org/10.1099/mgen.0.000992openalex-snapshot
Transcriptomics in serum and culture medium reveal shared and differential gene regulation in pathogenic and commensal Streptococcus suis
inferred← citeshttps://doi.org/10.1099/mgen.0.001334openalex-snapshot
Streptococcus suis infection on European farms is associated with an altered tonsil microbiome and resistome
inferred← citeshttps://doi.org/10.11606/t.76.2023.tde-28032023-100228openalex-snapshot
Funcionalização de materiais poliméricos para aplicação da Inativação fotodinâmica em biofilmes bacterianos
inferred← citeshttps://doi.org/10.1186/s12866-022-02625-8openalex-snapshot
Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.1186/s12866-026-05553-zopenalex-snapshot
Growth heterogeneity of Streptococcus suis in host-mimicking conditions is independent of clinical origin
inferred← citeshttps://doi.org/10.1186/s13567-024-01270-5openalex-snapshot
Characterization of pig tonsils as niches for the generation of Streptococcus suis diversity
inferred← citeshttps://doi.org/10.1186/s40813-021-00234-xopenalex-snapshot
Adding value to food chain information: using data on pig welfare and antimicrobial use on-farm to predict meat inspection outcomes
inferred← citeshttps://doi.org/10.1186/s40813-025-00422-zopenalex-snapshot
The kinetics of maternal and self-developed Streptococcus suis-specific antibodies
inferred← citeshttps://doi.org/10.1371/journal.pone.0317513openalex-snapshot
Bacterial profiles of the oral, vaginal, and rectal mucosa and colostrum of periparturient sows
inferred← citeshttps://doi.org/10.1530/rep-25-0044openalex-snapshot
Divergence in the sow vaginal microbiota is associated with fertility
inferred← citeshttps://doi.org/10.18174/582380openalex-snapshot
The piglet tonsillar microbiome and Streptococcus suis disease
inferred← citeshttps://doi.org/10.21203/rs.3.rs-126949/v1openalex-snapshot
A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo
inferred← citeshttps://doi.org/10.3389/fcimb.2021.656674openalex-snapshot
Oral Microbiome Characteristics in Patients With Autoimmune Hepatitis
inferred← citeshttps://doi.org/10.3389/fpubh.2019.00379openalex-snapshot
Culture-Negative Streptococcus suis Infection Diagnosed by Metagenomic Next-Generation Sequencing
inferred← citeshttps://doi.org/10.3389/fsysb.2023.1183868openalex-snapshot
Contribution of farms to the microbiota in the swine value chain
inferred← citeshttps://doi.org/10.3389/fvets.2022.1045190openalex-snapshot
Combination of Fe(OH)3 modified diatomaceous earth and qPCR for the enrichment and detection of African swine fever virus in water
inferred← citeshttps://doi.org/10.3390/ani16121840openalex-snapshot
The Salivary Microbiota–Host Nexus: Unraveling Opportunities for Non-Invasive Monitoring of Health and Productivity in Farm Animals
inferred← citeshttps://doi.org/10.3390/applmicrobiol5010015openalex-snapshot
Pathogenic Yersinia enterocolitica’s Contamination of Cheeks, Tongues, and Other Pork Meats at Retail in France, 2023
inferred← citeshttps://doi.org/10.3390/brainsci12081111openalex-snapshot
Changes in Oral Microbial Diversity in a Piglet Model of Traumatic Brain Injury
inferred← citeshttps://doi.org/10.3390/microorganisms9020252openalex-snapshot
Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
inferred← citeshttps://doi.org/10.3390/microorganisms9112314openalex-snapshot
Insights into the Oral Bacterial Microbiota of Sows
inferred← citeshttps://doi.org/10.3390/pathogens10060697openalex-snapshot
Sow Contact Is a Major Driver in the Development of the Nasal Microbiota of Piglets
inferred← citeshttps://doi.org/10.3390/pathogens12040541openalex-snapshot
Role of Metabolic Adaptation of Streptococcus suis to Host Niches in Bacterial Fitness and Virulence
inferred← citeshttps://doi.org/10.3390/pathogens9010040openalex-snapshot
Analysis of Porcine Pro- and Anti-Inflammatory Cytokine Induction by S. suis In Vivo and In Vitro
inferred← citeshttps://doi.org/10.3390/v14091996openalex-snapshot
From Farm to Fork: Streptococcus suis as a Model for the Development of Novel Phage-Based Biocontrol Agents
inferred← citeshttps://doi.org/10.3390/vetsci12040316openalex-snapshot
Changes of Cytokines in Saliva of Pigs with Streptococcus suis Infection Measured with a Multiplex Assay
inferred← citeshttps://doi.org/10.3390/vetsci13040366openalex-snapshot
Epidemiology of Major Bacterial Pathogens Associated with Porcine Respiratory Disease Complex: A Cross-Sectional Study from Intensive Swine Farms in Xinjiang, China (2024–2025)
inferred← citeshttps://doi.org/10.3390/vetsci13080807openalex-snapshot
A Streptococcus suis Harmonized IdeSsuis Mac-1 Domain Genotype-Based Classification Proposal and Prevalence in European Isolates
inferred← citeshttps://doi.org/10.36062/ijah.59.2spl.2020.36-49openalex-snapshot
Metagenomics and its relevance to animal diseases and gut health
inferred← citeshttps://doi.org/10.4081/ijfs.2022.10346openalex-snapshot
Intradiaphragmatic abscesses in a wild boar (Sus scrofa): Inspective implications based on anatomopathological evidences
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213416openalex-snapshot
Additional file 10 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213419openalex-snapshot
Additional file 11 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213422openalex-snapshot
Additional file 12 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213543openalex-snapshot
Additional file 7 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213546openalex-snapshot
Additional file 8 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.21213549openalex-snapshot
Additional file 9 of Environmental and maternal factors shaping tonsillar microbiota development in piglets
inferred← citeshttps://doi.org/10.6084/m9.figshare.26677814openalex-snapshot
Additional file 1 of Characterization of pig tonsils as niches for the generation of Streptococcus suis diversity
inferred← citeshttps://doi.org/10.6084/m9.figshare.26677817openalex-snapshot
Additional file 2 of Characterization of pig tonsils as niches for the generation of Streptococcus suis diversity
inferred← citeshttps://doi.org/10.6084/m9.figshare.26677820openalex-snapshot
Additional file 3 of Characterization of pig tonsils as niches for the generation of Streptococcus suis diversity
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