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Unveiling prognostics biomarkers of tyrosine metabolism reprogramming in liver cancer by cross-platform gene expression analyses

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Reduced survival of patients with hepatocellular carcinoma expressing hexokinase II
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Roles of the tyrosine isomers meta- tyrosine and ortho- tyrosine in oxidative stress
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MiR-661 contributed to cell proliferation of human ovarian cancer cells by repressing INPP5J expression
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Silencing of glutathione S-transferase P1 by promoter hypermethylation and its relationship to environmental chemical carcinogens in hepatocellular carcinoma
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Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
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microRNA-539 suppresses tumor growth and tumorigenesis and overcomes arsenic trioxide resistance in hepatocellular carcinoma
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HBx genotype D represses GSTP1 expression and increases the oxidative level and apoptosis in HepG2 cells
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Therapeutic applications of dichloroacetate and the role of glutathione transferase zeta-1
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Plasma free amino acid profile in cancer patients
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The Role of Glutathione and Glutathione S-Transferases in the Metabolism of Chemical Carcinogens and Other Electrophilic Agents
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ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform
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PARP14 promotes the Warburg effect in hepatocellular carcinoma by inhibiting JNK1-dependent PKM2 phosphorylation and activation
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The Cancer Genome Atlas Pan-Cancer analysis project
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Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
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Conversion of hepatoma cells to hepatocyte-like cells by defined hepatocyte nuclear factors
inferredcites →https://doi.org/10.1038/s41467-017-02733-4openalex-snapshot
Hexokinase-2 depletion inhibits glycolysis and induces oxidative phosphorylation in hepatocellular carcinoma and sensitizes to metformin
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Validation of miRNA prognostic power in hepatocellular carcinoma using expression data of independent datasets
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Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington’s disease subjects
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Deletion mapping of chromosome 16q in hepatocellular carcinoma
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Increased Lipogenesis, Induced by AKT-mTORC1-RPS6 Signaling, Promotes Development of Human Hepatocellular Carcinoma
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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
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Cytidine methylation of regulatory sequences near the pi-class glutathione S-transferase gene accompanies human prostatic carcinogenesis.
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GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
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NCBI GEO: archive for functional genomics data sets—update
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starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
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limma powers differential expression analyses for RNA-sequencing and microarray studies
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GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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Aberrant DNA Methylation on Chromosome 16 Is an Early Event in Hepatocarcinogenesis
inferredcites →https://doi.org/10.1126/science.1211485openalex-snapshot
Inhibition of Pyruvate Kinase M2 by Reactive Oxygen Species Contributes to Cellular Antioxidant Responses
inferredcites →https://doi.org/10.1126/science.123.3191.309openalex-snapshot
On the Origin of Cancer Cells
inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot
Tissue-based map of the human proteome
inferredcites →https://doi.org/10.1155/2017/5202684openalex-snapshot
Diabetes Mellitus and Risk of Hepatocellular Carcinoma
inferredcites →https://doi.org/10.1155/2018/7512159openalex-snapshot
Aberrant Metabolism in Hepatocellular Carcinoma Provides Diagnostic and Therapeutic Opportunities
inferredcites →https://doi.org/10.1158/0008-5472.can-08-2852openalex-snapshot
Advances in Chemical Carcinogenesis: A Historical Review and Prospective
inferredcites →https://doi.org/10.1158/1055-9965.epi-14-0980openalex-snapshot
Tyrosine, Phenylalanine, and Tryptophan in Gastroesophageal Malignancy: A Systematic Review
inferredcites →https://doi.org/10.1158/2159-8290.cd-12-0095openalex-snapshot
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
inferredcites →https://doi.org/10.1186/gb-2011-12-4-r41openalex-snapshot
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
inferredcites →https://doi.org/10.1186/s12943-017-0698-4openalex-snapshot
MiR-661 promotes tumor invasion and metastasis by directly inhibiting RB1 in non small cell lung cancer
inferredcites →https://doi.org/10.1186/s13046-016-0337-8openalex-snapshot
miR-539 inhibits prostate cancer progression by directly targeting SPAG5
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1289/ehp.1002206openalex-snapshot
Polymorphisms in GSTT1 , GSTZ1 , and CYP2E1 , Disinfection By-products, and Risk of Bladder Cancer in Spain
inferredcites →https://doi.org/10.1371/journal.pone.0013984openalex-snapshot
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
inferredcites →https://doi.org/10.1371/journal.pone.0030181openalex-snapshot
Esophageal Cancer Metabolite Biomarkers Detected by LC-MS and NMR Methods
inferredcites →https://doi.org/10.18388/abp.1996_4530openalex-snapshot
Tyrosine and its catabolites: from disease to cancer.
inferredcites →https://doi.org/10.18632/aging.101473openalex-snapshot
A panel of three oxidative stress-related genes predicts overall survival in ovarian cancer patients received platinum-based chemotherapy
inferredcites →https://doi.org/10.18632/oncotarget.6357openalex-snapshot
Down-regulation of oxidative phosphorylation in the liver by expression of the ATPase inhibitory factor 1 induces a tumor-promoter metabolic state
inferredcites →https://doi.org/10.2174/1386207319666161220115409openalex-snapshot
Towards Tyrosine Metabolism in Esophageal Squamous Cell Carcinoma
inferredcites →https://doi.org/10.3109/10715761003667554openalex-snapshot
Reactive oxygen species in cancer
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fcell.2018.00138openalex-snapshot
High Expression of Glycolytic Genes in Cirrhosis Correlates With the Risk of Developing Liver Cancer
inferredcites →https://doi.org/10.3892/ol.2018.8892openalex-snapshot
MicroRNA‑539 inhibits colorectal cancer progression by directly targeting SOX4
inferredcites →https://doi.org/10.3892/or.2017.5549openalex-snapshot
miR-539 inhibits FSCN1 expression and suppresses hepatocellular carcinoma migration and invasion
inferredcites →https://doi.org/10.4254/wjh.v9.i1.1openalex-snapshot
Disease monitoring of hepatocellular carcinoma through metabolomics
inferredcites →https://doi.org/10.7554/elife.05005openalex-snapshot
Predicting effective microRNA target sites in mammalian mRNAs

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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TRIM21-mediated ubiquitylation of TAT suppresses liver metastasis in gallbladder cancer
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Scoparone enhances the stability of TAT protein by inhibiting the Ubiquitin-Proteasome pathway, regulates mitochondrial damage against chronic alcoholic liver disease
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Alterations in serum metabolic profiles of early-stage hepatocellular carcinoma patients after radiofrequency ablation therapy
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Label-free serum SERS combined with RFE-GBDT algorithm for non-invasive screening of liver cancer
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Self-inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo
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Overexpression of alcohol dehydrogenase 1 A inhibits the progress of triple negative breast cancer via Wnt/β-catenin signaling
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In Vivo Chemosuppressive Effects of Kolaviron on 7,12-Dimethylbenzanthracene-Induced Mammary Lesions are Associated with Changes in Levels of Estrogen Receptor-α, CYP 1A1, Proinflammatory Cytokines, and Alterations to Metabolic Pathways Implicated in Mammary Carcinogenesis
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Associations between prediagnostic plasma metabolites and biliary tract cancer risk in the prospective UK Biobank cohort
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Structural and Evolutionary Relationships of Melanin Cascade Proteins in Cnidarian Innate Immunity
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Gene Expression Analysis Reveals Prognostic Biomarkers of the Tyrosine Metabolism Reprogramming Pathway for Prostate Cancer
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