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Effects of ploidy and salmonid alphavirus infection on the skin and gill microbiome of Atlantic salmon (Salmo salar)

https://doi.org/10.1371/journal.pone.0243684

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00222017openalex-snapshot

The production of gynogenetic Atlantic salmon, Salmo salar L.

inferredcites →https://doi.org/10.1007/s10295-008-0393-yopenalex-snapshot

A comparison of methods for total community DNA preservation and extraction from various thermal environments

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Thermal Tolerance of Diploid Versus Triploid Rainbow Trout and Brook Trout Assessed by Time to Chronic Lethal Maximum

inferredcites →https://doi.org/10.1016/j.aquaculture.2013.06.004openalex-snapshot

Ploidy and family effects on Atlantic salmon (Salmo salar) growth, deformity and harvest quality during a full commercial production cycle

inferredcites →https://doi.org/10.1016/j.aquaculture.2014.09.027openalex-snapshot

Effects of transportation stress and addition of salt to transport water on the skin mucosal homeostasis of rainbow trout (Oncorhynchus mykiss)

inferredcites →https://doi.org/10.1016/j.aquaculture.2016.10.011openalex-snapshot

Temporal changes in infections with some pathogens associated with gill disease in farmed Atlantic salmon ( Salmo salar L)

inferredcites →https://doi.org/10.1016/j.cbpa.2010.09.018openalex-snapshot

Comparative seawater performance and deformity prevalence in out-of-season diploid and triploid Atlantic salmon (Salmo salar) post-smolts

inferredcites →https://doi.org/10.1016/j.fsi.2012.04.001openalex-snapshot

The effect of triploidy and vaccination on neutrophils and B-cells in the peripheral blood and head kidney of 0+ and 1+ Atlantic salmon (Salmo salar L.) post-smolts

inferredcites →https://doi.org/10.1016/j.fsi.2018.11.079openalex-snapshot

Analysis of the gut and gill microbiome of resistant and susceptible lines of rainbow trout ( Oncorhynchus mykiss )

inferredcites →https://doi.org/10.1016/j.jviromet.2005.08.012openalex-snapshot

Sensitive and specific detection of Salmonid alphavirus using real-time PCR (TaqMan®)

inferredcites →https://doi.org/10.1016/j.molmed.2014.12.002openalex-snapshot

The infant microbiome development: mom matters

inferredcites →https://doi.org/10.1016/s1050-4648(02)00185-7openalex-snapshot

Peripheral blood and head kidney leucocyte populations during out-of-season (0+) parr-smolt transformation and seawater transfer of Atlantic salmon (Salmo salar L.)

inferredcites →https://doi.org/10.1016/s1050-4648(05)80015-4openalex-snapshot

Changes in serum protein and IgM concentration duringsmolting and early post-smolt period in vaccinated and unvaccinated Atlantic salmon (Salmo salar L.).

inferredcites →https://doi.org/10.1016/s1546-5098(08)60216-2openalex-snapshot

4 The Physiology of Smolting Salmonids

inferredcites →https://doi.org/10.1017/s0031182012000030openalex-snapshot

Isolation and culture of Sphaerothecum destruens from Sunbleak (Leucaspius delineatus) in the UK and pathogenicity experiments in Atlantic salmon (Salmo salar)

inferredcites →https://doi.org/10.1038/hdy.2009.108openalex-snapshot

Transcriptional differences between triploid and diploid Chinook salmon (Oncorhynchus tshawytscha) during live Vibrio anguillarum challenge

inferredcites →https://doi.org/10.1038/nature11552openalex-snapshot

Functional interactions between the gut microbiota and host metabolism

inferredcites →https://doi.org/10.1038/nature18847openalex-snapshot

The microbiome and innate immunity

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/nrmicro2540openalex-snapshot

Unravelling the effects of the environment and host genotype on the gut microbiome

inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

inferredcites →https://doi.org/10.1038/srep19707openalex-snapshot

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

inferredcites →https://doi.org/10.1111/anu.12238openalex-snapshot

Increased dietary phosphorous prevents vertebral deformities in triploid Atlantic salmon (Salmo salarL.)

inferredcites →https://doi.org/10.1111/j.1365-2761.2007.00848.xopenalex-snapshot

Alphavirus infections in salmonids – a review

inferredcites →https://doi.org/10.1111/j.1365-2761.2008.00944.xopenalex-snapshot

Phylogenetic analyses and molecular epidemiology of European salmonid alphaviruses (SAV) based on partial E2 and nsP3 gene nucleotide sequences

inferredcites →https://doi.org/10.1111/j.1365-2761.2008.01011.xopenalex-snapshot

The global economic cost of sea lice to the salmonid farming industry

inferredcites →https://doi.org/10.1111/jfd.12238openalex-snapshot

Clinical manifestations of pancreas disease outbreaks in N orwegian marine salmon farming – variations due to salmonid alphavirus subtype

inferredcites →https://doi.org/10.1111/jfd.12312openalex-snapshot

Mortality and weight loss of Atlantic salmon, Salmon salar L., experimentally infected with salmonid alphavirus subtype 2 and subtype 3 isolates from Norway

inferredcites →https://doi.org/10.1111/jfd.12594openalex-snapshot

Water temperature and dietary histidine affect cataract formation in Atlantic salmon (Salmo salar L.) diploid and triploid yearling smolt

inferredcites →https://doi.org/10.1111/jfd.12814openalex-snapshot

Investigation of co‐infections with pathogens associated with gill disease in Atlantic salmon during an amoebic gill disease outbreak

inferredcites →https://doi.org/10.1111/mec.13798openalex-snapshot

Effects of host genetics and environment on egg‐associated microbiotas in brown trout (Salmo trutta)

inferredcites →https://doi.org/10.1126/science.1227412openalex-snapshot

Animal Behavior and the Microbiome

inferredcites →https://doi.org/10.1146/annurev-virology-031413-085550openalex-snapshot

Viruses and the Microbiota

inferredcites →https://doi.org/10.1186/s12967-017-1175-yopenalex-snapshot

Influence of diet on the gut microbiome and implications for human health

inferredcites →https://doi.org/10.1186/s12985-016-0520-8openalex-snapshot

Atlantic salmon (Salmo salar L.) post-smolts challenged two or nine weeks after seawater-transfer show differences in their susceptibility to salmonid alphavirus subtype 3 (SAV3)

inferredcites →https://doi.org/10.1186/s13567-015-0238-4openalex-snapshot

Yersinia ruckeri, the causative agent of enteric redmouth disease in fish

inferredcites →https://doi.org/10.1186/s13567-016-0383-4openalex-snapshot

The impact of co-infections on fish: a review

inferredcites →https://doi.org/10.1186/s13567-016-0385-2openalex-snapshot

Relationship between viral dose and outcome of infection in Atlantic salmon, Salmo salar L., post-smolts bath-challenged with salmonid alphavirus subtype 3

inferredcites →https://doi.org/10.1186/s40168-016-0190-1openalex-snapshot

Environment shapes the fecal microbiome of invasive carp species

inferredcites →https://doi.org/10.1371/journal.pone.0032696openalex-snapshot

A Novel Betaproteobacterial Agent of Gill Epitheliocystis in Seawater Farmed Atlantic Salmon (Salmo salar)

inferredcites →https://doi.org/10.1371/journal.pone.0043129openalex-snapshot

Three Decades of Farmed Escapees in the Wild: A Spatio-Temporal Analysis of Atlantic Salmon Population Genetic Structure throughout Norway

inferredcites →https://doi.org/10.1371/journal.pone.0172856openalex-snapshot

Salmonid alphavirus infection causes skin dysbiosis in Atlantic salmon (Salmo salar L.) post-smolts

inferredcites →https://doi.org/10.1371/journal.pone.0175468openalex-snapshot

Triploid atlantic salmon (Salmo salar L.) post-smolts accumulate prevalence more slowly than diploid salmon following bath challenge with salmonid alphavirus subtype 3

inferredcites →https://doi.org/10.1371/journal.pone.0195472openalex-snapshot

Distinct seasonal infectious agent profiles in life-history variants of juvenile Fraser River Chinook salmon: An application of high-throughput genomic screening

inferredcites →https://doi.org/10.2436/20.1501.01.27openalex-snapshot

Co-occurrence of viral and bacterial pathogens in disease outbreaks affecting newly cultured sparid fish.

inferredcites →https://doi.org/10.25959/23246003openalex-snapshot

Comparison of aspects of the physiology and morphology of diploid and triploid Atlantic salmon Salmo salar

inferredcites →https://doi.org/10.3354/dao02563openalex-snapshot

‘Candidatus Branchiomonas cysticola’ is a common agent of epitheliocysts in seawater-farmed Atlantic salmon Salmo salar in Norway and Ireland

inferredcites →https://doi.org/10.3390/v3112025openalex-snapshot

Viruses of Fish: An Overview of Significant Pathogens

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4803803openalex-extracted

Analysis of Gill and Skin Microbiota in Larimichthys Crocea Reveals Bacteria Associated with Cryptocaryonosis Resistance Potential

inferred← citeshttps://doi.org/10.1002/cpz1.1069openalex-snapshot

Nanopore‐Enabled Microbiome Analysis: Investigating Environmental and Host‐Associated Samples in Rainbow Trout Aquaculture

inferred← citeshttps://doi.org/10.1007/s10499-025-01894-0openalex-snapshot

Variations in mucous cell parameters in the gills and skin of farmed Atlantic salmon (Salmo salar) from freshwater flow-through and recirculating aquaculture systems compared to the gills of wild Atlantic salmon juveniles

inferred← citeshttps://doi.org/10.1007/s42995-024-00248-8openalex-snapshot

Understanding the role of microbes in health and disease of farmed aquatic organisms

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738053openalex-snapshot

Effects of dietary vitamin C, thyme essential oil, and quercetin on the immunological and antioxidant status of common carp (Cyprinus carpio)

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738162openalex-snapshot

Beneficial effects of Persian shallot (Allium hirtifolium) extract on growth performance, biochemical, immunological and antioxidant responses of rainbow trout Oncorhynchus mykiss fingerlings

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738254openalex-snapshot

RETRACTED: Beneficial alterations in growth performance, blood biochemicals, immune responses, and antioxidant capacity of common carp (Cyprinus carpio) fed a blend of Thymus vulgaris, Origanum majorana, and Satureja hortensis extracts

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738352openalex-snapshot

Temporal changes in skin and gill microbiomes of Atlantic salmon in a recirculating aquaculture system – Why do they matter?

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.739211openalex-snapshot

Time is a stronger predictor of microbiome community composition than tissue in external mucosal surfaces of Atlantic salmon (Salmo salar) reared in a semi-natural freshwater environment

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.740322openalex-snapshot

Assessment of gill microbiome of two strains of Atlantic salmon reared in flowthrough and recirculation hatcheries and following seawater transfer

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742166openalex-snapshot

Microbial and histopathological insights into gill health of Atlantic salmon (Salmo salar) across Scottish aquaculture sites

inferred← citeshttps://doi.org/10.1016/j.fsi.2025.110228openalex-snapshot

Analysis of gill and skin microbiota in Larimichthys crocea reveals bacteria associated with cryptocaryoniasis resistance potential

inferred← citeshttps://doi.org/10.1038/s41598-022-17008-2openalex-snapshot

Dynamic gill and mucus microbiomes during a gill disease episode in farmed Atlantic salmon

inferred← citeshttps://doi.org/10.1038/s41598-023-37670-4openalex-snapshot

Sex-dependent effects of mechanical delousing on the skin microbiome of broodstock Atlantic salmon (Salmo salar L.)

inferred← citeshttps://doi.org/10.1093/femsre/fuaf027openalex-snapshot

The ecology and plasticity of fish skin and gill microbiomes: seeking what matters in health and disease

inferred← citeshttps://doi.org/10.1093/jambio/lxac073openalex-snapshot

Association between melanin deposits in gill tissue and microbiome across different hatchery reared Atlantic salmon

inferred← citeshttps://doi.org/10.1111/are.15829openalex-snapshot

Dietary Dracocephalum kotschyi essential oil improved growth, haematology, immunity and resistance to Aeromonas hydrophila in rainbow trout ( Oncorhynchus mykiss )

inferred← citeshttps://doi.org/10.1111/jfd.13695openalex-snapshot

Triploid Atlantic salmon (Salmo salar) may have increased risk of primary field outbreaks of infectious salmon anaemia

inferred← citeshttps://doi.org/10.1111/jfd.14157openalex-snapshot

Skin‐Mucus Prokaryote Community of Atlantic Salmon ( Salmo salar ) in Response to Bath Challenge With Tenacibaculum dicentrarchi

inferred← citeshttps://doi.org/10.1111/raq.12745openalex-snapshot

Fish disease prevention via microbial dysbiosis‐associated biomarkers in aquaculture

inferred← citeshttps://doi.org/10.1155/2022/7942506openalex-snapshot

The Effects of Dietary Thyme Oil (Thymus vulgaris) Essential Oils for Common Carp (Cyprinus carpio): Growth Performance, Digestive Enzyme Activity, Antioxidant Defense, Tissue and Mucus Immune Parameters, and Resistance against Aeromonas hydrophila

inferred← citeshttps://doi.org/10.1155/2022/8297479openalex-snapshot

Effects of Dietary Supplementation of PrimaLac, Inulin, and Biomin Imbo on Growth Performance, Antioxidant, and Innate Immune Responses of Common Carp (Cyprinus carpio)

inferred← citeshttps://doi.org/10.1177/1934578x241289253openalex-snapshot

Antioxidant and Immunological Properties of Dracocephalum moldavica Extract in Penaeus vannamei

inferred← citeshttps://doi.org/10.1186/s42523-024-00347-yopenalex-snapshot

Hatchery type influences the gill microbiome of Atlantic farmed salmon (Salmo salar) after transfer to sea

inferred← citeshttps://doi.org/10.21608/ejabf.2024.358875openalex-snapshot

Effect of Formic Acid and Biotin Supplementation on Growth Performance and Survival of the Carp Fish Challenged with Vibrio parahaemolyticus Infection

inferred← citeshttps://doi.org/10.2478/aoas-2022-0032openalex-snapshot

Lactobacillus casei (IBRC-M 10,711) ameliorates the growth retardation, oxidative stress, and Immunosuppression induced by malathion toxicity in goldfish ( Carassius auratus )

inferred← citeshttps://doi.org/10.2478/aoas-2022-0036openalex-snapshot

Dietary Sargassum angustifolium (Macro-Algae, Sargassaceae) extract improved antioxidant defense system in diazionon-exposed common carp, Cyprinus carpio

inferred← citeshttps://doi.org/10.2478/aoas-2023-0056openalex-snapshot

Effects of dietary Lactobacillus helveticus ATC 15009 on growth performance, hematology parameters, innate immune responses, and the antioxidant status of rainbow trout ( Oncorhynchus mykiss) under high rearing density

inferred← citeshttps://doi.org/10.32942/x2qg80openalex-snapshot

A Review of Factors Affecting Farmed Atlantic Salmon (Salmo salar) Welfare in Australia and Beyond

inferred← citeshttps://doi.org/10.3389/fgene.2022.852165openalex-snapshot

RNA-Seq Analysis of the Growth Hormone Transgenic Female Triploid Atlantic Salmon (Salmo salar) Hepatic Transcriptome Reveals Broad Temperature-Mediated Effects on Metabolism and Other Biological Processes

inferred← citeshttps://doi.org/10.3390/ani13010167openalex-snapshot

Dietary Supplementation with a Blend of Hydrolyzable and Condensed Tannins Ameliorates Diet-Induced Intestinal Inflammation in Zebrafish (Danio rerio)

inferred← citeshttps://doi.org/10.3390/ani14010097openalex-snapshot

Salmo salar Skin and Gill Microbiome during Piscirickettsia salmonis Infection

inferred← citeshttps://doi.org/10.3390/antiox12061288openalex-snapshot

Effect of Copper Sulphate Exposure on the Oxidative Stress, Gill Transcriptome and External Microbiota of Yellow Catfish, Pelteobagrus fulvidraco

inferred← citeshttps://doi.org/10.3390/microorganisms12020283openalex-snapshot

Detection of Nucleic Acids of the Fish Pathogen Yersinia ruckeri from Planktonic and Biofilm Samples with a CRISPR/Cas13a-Based Assay

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