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Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat

https://doi.org/10.1534/g3.117.043679

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/iub.1256openalex-snapshot

NAC transcription factor gene regulatory and protein–protein interaction networks in plant stress responses and senescence

inferredcites →https://doi.org/10.1007/s11033-010-0023-4openalex-snapshot

Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses

inferredcites →https://doi.org/10.1007/s12041-015-0526-9openalex-snapshot

Genomewide identification, classification and analysis of NAC type gene family in maize

inferredcites →https://doi.org/10.1007/s12155-009-9047-9openalex-snapshot

A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production

inferredcites →https://doi.org/10.1016/j.gene.2010.06.008openalex-snapshot

Genome-wide analysis of NAC transcription factor family in rice

inferredcites →https://doi.org/10.1016/j.pbi.2017.01.007openalex-snapshot

Wheat genomics comes of age

inferredcites →https://doi.org/10.1016/j.plaphy.2016.12.028openalex-snapshot

Identification and expression analysis of the NAC transcription factor family in durum wheat (Triticum turgidum L. ssp. durum)

inferredcites →https://doi.org/10.1016/j.pmpp.2010.06.005openalex-snapshot

TaNAC8, a novel NAC transcription factor gene in wheat, responds to stripe rust pathogen infection and abiotic stresses

inferredcites →https://doi.org/10.1016/j.tplants.2004.12.010openalex-snapshot

NAC transcription factors: structurally distinct, functionally diverse

inferredcites →https://doi.org/10.1016/s0092-8674(00)81093-4openalex-snapshot

The No Apical Meristem Gene of Petunia Is Required for Pattern Formation in Embryos and Flowers and Is Expressed at Meristem and Primordia Boundaries

inferredcites →https://doi.org/10.1016/s1360-1385(03)00014-1openalex-snapshot

The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins

inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

inferredcites →https://doi.org/10.1038/nbt.2969openalex-snapshot

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

inferredcites →https://doi.org/10.1038/ncomms12617openalex-snapshot

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

inferredcites →https://doi.org/10.1038/ncomms14261openalex-snapshot

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

inferredcites →https://doi.org/10.1038/sj.embor.7400093openalex-snapshot

Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors

inferredcites →https://doi.org/10.1042/bj20111742openalex-snapshot

DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors

inferredcites →https://doi.org/10.1071/fp05161openalex-snapshot

TaNAC69 from the NAC superfamily of transcription factors is up-regulated by abiotic stresses in wheat and recognises two consensus DNA-binding sequences

inferredcites →https://doi.org/10.1073/pnas.0937399100openalex-snapshot

Positional cloning of the wheat vernalization gene VRN1

inferredcites →https://doi.org/10.1073/pnas.1619268114openalex-snapshot

Uncovering hidden variation in polyploid wheat

inferredcites →https://doi.org/10.1073/pnas.95.25.14863openalex-snapshot

Cluster analysis and display of genome-wide expression patterns

inferredcites →https://doi.org/10.1074/jbc.m705217200openalex-snapshot

Identification of a Calmodulin-binding NAC Protein as a Transcriptional Repressor in Arabidopsis

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/dnares/10.6.239openalex-snapshot

Comprehensive Analysis of NAC Family Genes in Oryza sativa and Arabidopsis thaliana

inferredcites →https://doi.org/10.1093/dnares/dsr015openalex-snapshot

Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress

inferredcites →https://doi.org/10.1093/jxb/erp257openalex-snapshot

Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain

inferredcites →https://doi.org/10.1093/jxb/err462openalex-snapshot

TaNAC2, a NAC-type wheat transcription factor conferring enhanced multiple abiotic stress tolerances in Arabidopsis

inferredcites →https://doi.org/10.1093/jxb/erw409openalex-snapshot

Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor

inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot

MEME SUITE: tools for motif discovery and searching

inferredcites →https://doi.org/10.1093/nar/gkt1016openalex-snapshot

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

inferredcites →https://doi.org/10.1093/pcp/pcu183openalex-snapshot

Triticeae Resources in Ensembl Plants

inferredcites →https://doi.org/10.1101/gad.852200openalex-snapshot

Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development

inferredcites →https://doi.org/10.1101/gr.073585.107openalex-snapshot

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

inferredcites →https://doi.org/10.1101/gr.217117.116openalex-snapshot

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

inferredcites →https://doi.org/10.1104/pp.107.110908openalex-snapshot

Stamen Abscission Zone Transcriptome Profiling Reveals New Candidates for Abscission Control: Enhanced Retention of Floral Organs in Transgenic Plants Overexpressing ArabidopsisZINC FINGER PROTEIN2

inferredcites →https://doi.org/10.1104/pp.110.159517openalex-snapshot

Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator

inferredcites →https://doi.org/10.1104/pp.15.00568openalex-snapshot

The nitrate inducible NAC transcription factor TaNAC2-5A controls nitrate response and increases wheat yield

inferredcites →https://doi.org/10.1104/pp.15.01667openalex-snapshot

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

inferredcites →https://doi.org/10.1105/tpc.104.022699openalex-snapshot

Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsivecis-Element in theearly responsive to dehydration stress 1Promoter[W]

inferredcites →https://doi.org/10.1105/tpc.108.064048openalex-snapshot

VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.9.6.841openalex-snapshot

Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.

inferredcites →https://doi.org/10.1111/2041-210x.12628openalex-snapshot

ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data

inferredcites →https://doi.org/10.1111/j.1399-3054.2011.01539.xopenalex-snapshot

Molecular characterization of novel TaNAC genes in wheat and overexpression of TaNAC2a confers drought tolerance in tobacco

inferredcites →https://doi.org/10.1111/mpp.12089openalex-snapshot

The target gene of tae‐ miR164 , a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust

inferredcites →https://doi.org/10.1111/plb.12296openalex-snapshot

Overexpression of a NAC transcription factor delays leaf senescence and increases grain nitrogen concentration in wheat

inferredcites →https://doi.org/10.1126/science.1133649openalex-snapshot

A NAC Gene Regulating Senescence Improves Grain Protein, Zinc, and Iron Content in Wheat

inferredcites →https://doi.org/10.1186/1471-2105-9-1openalex-snapshot

Evaluation of time profile reconstruction from complex two-color microarray designs

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/1471-2105-9-s1-s12openalex-snapshot

Improved general regression network for protein domain boundary prediction

inferredcites →https://doi.org/10.1186/1471-2164-11-185openalex-snapshot

wDBTF: an integrated database resource for studying wheat transcription factor families

inferredcites →https://doi.org/10.1186/1756-0500-4-302openalex-snapshot

Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved functions compared to both monocots and dicots

inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot

Gene ontology analysis for RNA-seq: accounting for selection bias

inferredcites →https://doi.org/10.1186/s12864-015-1313-yopenalex-snapshot

Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat

inferredcites →https://doi.org/10.1186/s12870-014-0368-2openalex-snapshot

Regulation of Zn and Fe transporters by the GPC1gene during early wheat monocarpic senescence

inferredcites →https://doi.org/10.1186/s12870-015-0644-9openalex-snapshot

TaNAC29, a NAC transcription factor from wheat, enhances salt and drought tolerance in transgenic Arabidopsis

inferredcites →https://doi.org/10.12688/f1000research.7563.1openalex-snapshot

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

inferredcites →https://doi.org/10.1371/journal.pone.0033234openalex-snapshot

Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)

inferredcites →https://doi.org/10.1371/journal.pone.0084359openalex-snapshot

Novel NAC Transcription Factor TaNAC67 Confers Enhanced Multi-Abiotic Stress Tolerances in Arabidopsis

inferredcites →https://doi.org/10.1371/journal.pone.0141866openalex-snapshot

Comparative Genomics of NAC Transcriptional Factors in Angiosperms: Implications for the Adaptation and Diversification of Flowering Plants

inferredcites →https://doi.org/10.3389/fpls.2015.00108openalex-snapshot

TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Transcriptome responses in wheat roots to colonization by the arbuscular mycorrhizal fungus Rhizophagus irregularis

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5-mC methylation study of sORFs in 3ˈUTR of transcription factor JUNGBRUNNEN 1-like during leaf rust pathogenesis in wheat

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A long non-coding RNA functions as a competitive endogenous RNA to modulate TaNAC018 by acting as a decoy for tae-miR6206

inferred← citeshttps://doi.org/10.1007/s11240-020-01888-1openalex-snapshot

Artificial polyploidy induction for improvement of ornamental and medicinal plants

inferred← citeshttps://doi.org/10.1007/s11738-020-03051-xopenalex-snapshot

Transcriptome-wide identification, classification, and characterization of NAC family genes in Bamboo Bambusa emeiensis

inferred← citeshttps://doi.org/10.1007/s12298-020-00770-wopenalex-snapshot

Genome-wide analysis of NAC transcription factor family in maize under drought stress and rewatering

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Genome-wide identification, evolution and expression analysis of NAC gene family under salt stress in wild emmer wheat (Triticum dicoccoides. L)

inferred← citeshttps://doi.org/10.1016/j.jia.2022.08.016openalex-snapshot

The miR164-TaNAC14 module regulates root development and abiotic-stress tolerance in wheat seedlings

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Genome-wide identification and comprehensive analyses of NAC transcription factor gene family and expression patterns during somatic embryogenesis in Dimocarpus longan Lour

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Evolutionary progression and functional diversification of NAC family members in pearl millet with comprehensive characterization of PgNAC103 under drought stress

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Development and characterization of nitrogen and phosphorus use efficiency responsive genic and miRNA derived SSR markers in wheat

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Comprehensive genome-wide characterization of NAC transcription factors in Barley influence insights into stress tolerance and evolutionary dynamics

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Crop reproductive meristems in the genomic era: a brief overview

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Molecular characterisation of the NAM-1 genes in bread wheat in Australia

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Enhancing aluminium resistance in wheat ( Triticum aestivum L.) by exploring for novel genes in the wheat genome

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Transcription factor retention through multiple polyploidization steps in wheat

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Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement

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The NAC transcription factor NAC019-A1 is a negative regulator of starch synthesis in wheat developing endosperm

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The endosperm-specific transcription factor TaNAC019 regulates glutenin and starch accumulation and its elite allele improves wheat grain quality

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CSTDB: A Crop Stress-tolerance Gene and Protein Database Integrated by Convolutional Neural Networks

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Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications may have facilitated adaptation to different environmental conditions

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Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization

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TaSRO1 plays a dual role in suppressing TaSIP1 to fine tune mitochondrial retrograde signalling and enhance salinity stress tolerance

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A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease

inferred← citeshttps://doi.org/10.1111/pbi.13524openalex-snapshot

A novel NAC family transcription factor SPR suppresses seed storage protein synthesis in wheat

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Genome-Wide Identification and Characterization of Yellow Horn (Xanthoceras sorbifolia Bunge) NAC Transcription Factor Gene Family against Diverse Abiotic Stresses

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Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum)

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Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress

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Identification of new QTLs for quality traits and yield using tetraploid wheat interspecific backcross inbred lines

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Ubiquitin-related genes are differentially expressed in isogenic lines contrasting for pericarp cell size and grain weight in hexaploid wheat

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Genome wide identification and predicted functional analyses of NAC transcription factors in Asian pears

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Mal de Río Cuarto virus infection causes hormone imbalance and sugar accumulation in wheat leaves

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Conserved residues in the wheat (Triticum aestivum) NAM-A1 NAC domain are required for protein binding and when mutated lead to delayed peduncle and flag leaf senescence

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Additional file 1 of Comprehensive genomic survey, structural classification and expression analysis of C2H2-type zinc finger factor in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.6084/m9.figshare.15253311openalex-snapshot

Additional file 2 of Comprehensive genomic survey, structural classification and expression analysis of C2H2-type zinc finger factor in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.6084/m9.figshare.15253314openalex-snapshot

Additional file 3 of Comprehensive genomic survey, structural classification and expression analysis of C2H2-type zinc finger factor in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.70675/bfef7490z999dz4b16z9f53ze499c532079dopenalex-snapshot

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Genetic determination of drought resistance in common wheat (Triticum aestivum L.)

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Genes determining drought resistance of common wheat (Triticum aestivum L.)

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