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Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains

https://doi.org/10.1631/jzus.b1500029
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Radiofrequency ground heating for soil remediation: Science and engineering
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Degradation of oil sludge by landfarming — a case-study at the Ghent harbour
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Biodegradation of nicotine from tobacco waste extract by Ochrobactrum intermedium DN2
inferredcites →https://doi.org/10.1007/s12010-010-9032-yopenalex-snapshot
Investigation of Biosurfactant-Producing Indigenous Microorganisms that Enhance Residue Oil Recovery in an Oil Reservoir After Polymer Flooding
inferredcites →https://doi.org/10.1007/s13205-011-0038-0openalex-snapshot
Reduction of hexavalent chromium by Ochrobactrum intermedium BCR400 isolated from a chromium-contaminated soil
inferredcites →https://doi.org/10.1016/j.chemosphere.2011.06.086openalex-snapshot
Isolation and characterization of lead-tolerant Ochrobactrum intermedium and its role in enhancing lead accumulation by Eucalyptus camaldulensis
inferredcites →https://doi.org/10.1016/j.diagmicrobio.2005.05.014openalex-snapshot
Evaluation of Ochrobactrum intermedium bacteremia in a patient with bladder cancer
inferredcites →https://doi.org/10.1016/j.ibiod.2014.09.021openalex-snapshot
Bio-removal of diesel oil through a microbial consortium isolated from a polluted environment
inferredcites →https://doi.org/10.1016/j.margen.2014.08.006openalex-snapshot
Genome sequence of Brevibacillus agri strain 5-2, isolated from the formation water of petroleum reservoir
inferredcites →https://doi.org/10.1016/j.margen.2014.09.005openalex-snapshot
Permanent draft genome sequence of Geobacillus thermocatenulatus strain GS-1
inferredcites →https://doi.org/10.1016/j.margen.2014.09.007openalex-snapshot
Permanent draft genome sequence of Bacillus flexus strain T6186-2, a multidrug-resistant bacterium isolated from a deep-subsurface oil reservoir
inferredcites →https://doi.org/10.1016/j.marpolbul.2014.03.027openalex-snapshot
Isolation and characterization of crude oil degrading bacteria from the Persian Gulf (Khorramshahr provenance)
inferredcites →https://doi.org/10.1016/j.ygeno.2014.12.006openalex-snapshot
Complete genome sequence analysis of Pseudomonas aeruginosa N002 reveals its genetic adaptation for crude oil degradation
inferredcites →https://doi.org/10.1016/s0022-2836(62)80066-7openalex-snapshot
Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
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A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
inferredcites →https://doi.org/10.1038/srep00760openalex-snapshot
Microbial diversity in long-term water-flooded oil reservoirs with different in situ temperatures in China
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03580.xopenalex-snapshot
Prophages and bacterial genomics: what have we learned so far?
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A Detailed Phenotypic Characterisation of the Type Strains of Halomonas Species
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Clustal W and Clustal X version 2.0
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/nar/25.5.0955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
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tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/28.1.33openalex-snapshot
The COG database: a tool for genome-scale analysis of protein functions and evolution
inferredcites →https://doi.org/10.1093/nar/29.1.22openalex-snapshot
The COG database: new developments in phylogenetic classification of proteins from complete genomes
inferredcites →https://doi.org/10.1093/nar/gkg006openalex-snapshot
Rfam: an RNA family database
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/gkr485openalex-snapshot
PHAST: A Fast Phage Search Tool
inferredcites →https://doi.org/10.1093/nar/gks1005openalex-snapshot
Rfam 11.0: 10 years of RNA families
inferredcites →https://doi.org/10.1099/00207713-38-4-406openalex-snapshot
Ochrobactrum anthropi gen. nov., sp. nov. from Human Clinical Specimens and Previously Known as Group Vd
inferredcites →https://doi.org/10.1099/00207713-48-3-759openalex-snapshot
Evaluation of the relatedness of Brucella spp. and Ochrobactrum anthropi and description of Ochrobactrum intermedium sp. nov., a new species with a closer relationship to Brucella spp.
inferredcites →https://doi.org/10.1099/ijs.0.065078-0openalex-snapshot
Gilvimarinus polysaccharolyticus sp. nov., an agar-digesting bacterium isolated from seaweed, and emended description of the genus Gilvimarinus
inferredcites →https://doi.org/10.1099/jmm.0.46116-0openalex-snapshot
Molecular and phenotypic features for identification of the opportunistic pathogens Ochrobactrum spp.
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1111/1574-6968.12549openalex-snapshot
Genome sequencing analysis reveals virulence-related gene content ofOchrobactrum intermediumstrain 229E, a urease-positive strain isolated from the human gastric niche
inferredcites →https://doi.org/10.1126/science.1195979openalex-snapshot
Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
inferredcites →https://doi.org/10.1128/genomea.00268-15openalex-snapshot
Draft Genome Sequence of the Piezotolerant and Crude Oil-Degrading Bacterium Rhodococcus qingshengii Strain TUHH-12
inferredcites →https://doi.org/10.1128/genomea.00590-15openalex-snapshot
Draft Genome Sequence of Hydrocarbon-Degrading Pseudomonas putida Strain KG-4, Isolated from Soil Samples Collected from Krishna-Godavari Basin in India
inferredcites →https://doi.org/10.1128/jcm.37.1.241-244.1999openalex-snapshot
Ochrobactrum intermedium Infection after Liver Transplantation
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2164-12-402openalex-snapshot
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
inferredcites →https://doi.org/10.1186/1757-4749-5-7openalex-snapshot
Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India
inferredcites →https://doi.org/10.13005/ojc/300436openalex-snapshot
Bioremediation of Petroleum hydrocarbon by using Pseudomonas species isolated from Petroleum contaminated soil
inferredcites →https://doi.org/10.1371/journal.pntd.0001865openalex-snapshot
Global Burden of Human Brucellosis: A Systematic Review of Disease Frequency
inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.2105/ajph.13.12.1042-bopenalex-snapshot
Bergey's Manual of Determinative Bacteriology
inferredcites →https://doi.org/10.2307/1218353openalex-snapshot
Bergey's Manual of Determinative Bacteriology
inferredcites →https://doi.org/10.4103/0255-0857.115664openalex-snapshot
Ochrobactrum anthropi: An unusual pathogen: Are we missing them?

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Detection of Colistin-Resistant Gram-Negative Bacteria from Water Parks and Wastewater in Marseille, France
inferred← citeshttps://doi.org/10.1007/978-981-13-1840-5_10openalex-snapshot
A Comprehensive Review on the Bioremediation of Oil Spills
inferred← citeshttps://doi.org/10.1007/s00128-024-04001-wopenalex-snapshot
Potential Degradation of Low- and High-Density Polyethylene Films by Ochrobactrum intermedium SA1 from Sewage Sludge
inferred← citeshttps://doi.org/10.1007/s10123-024-00540-8openalex-snapshot
Brucella pituitosa strain BU72, a new hydrocarbonoclastic bacterium through exopolysaccharide-based surfactant production
inferred← citeshttps://doi.org/10.1016/j.procbio.2024.11.036openalex-snapshot
Genomic and phenotypic characterization of novel Ochrobactrum species isolated from Brazilian oil reservoirs: Genomic diversity and bioremediation potential
inferred← citeshttps://doi.org/10.1038/s41598-025-20748-6openalex-snapshot
Study on biodegradation of used engine oil in a stirred batch bioreactor by ochrobactrum intermedium and Bacillus paramycoides isolates
inferred← citeshttps://doi.org/10.1134/s0026261720060168openalex-snapshot
Diversity and Biotechnological Potential of Nitrate-Reducing Bacteria from Heavy-Oil Reservoirs (Russia)
inferred← citeshttps://doi.org/10.1186/s12944-017-0565-8openalex-snapshot
Lipase and biosurfactant from Ochrobactrum intermedium strain MZV101 isolated by washing powder for detergent application
inferred← citeshttps://doi.org/10.15359/rca.56-1.9openalex-snapshot
Biodiversidad bacteriana presente en suelos contaminados con hidrocarburos para realizar biorremediación
inferred← citeshttps://doi.org/10.3389/fmicb.2019.03083openalex-snapshot
Taxonomic Organization of the Family Brucellaceae Based on a Phylogenomic Approach
inferred← citeshttps://doi.org/10.3389/fmicb.2022.824834openalex-snapshot
Thermophilic Composting of Human Feces: Development of Bacterial Community Composition and Antimicrobial Resistance Gene Pool
inferred← citeshttps://doi.org/10.3390/antibiotics9040177openalex-snapshot
Genomic Characterization of Antimicrobial Resistance, Virulence, and Phylogeny of the Genus Ochrobactrum
inferred← citeshttps://doi.org/10.3390/jmse8080577openalex-snapshot
Potential of Biosurfactants’ Production on Degrading Heavy Oil by Bacterial Consortia Obtained from Tsunami-Induced Oil-Spilled Beach Areas in Miyagi, Japan
inferred← citeshttps://doi.org/10.5772/intechopen.70109openalex-snapshot
Petroleum Degradation: Promising Biotechnological Tools for Bioremediation
inferred← citeshttps://doi.org/10.70675/2994397czb3ecz4584z83bbze00ac2576ca7openalex-snapshot
Isolation and identification of bacteria found in the aquatic environment
inferred← citeshttps://doi.org/10.70675/e6e216dbz7cf1z4c26z8bc6zf31bbe187a06openalex-snapshot
Etude de la résistance aux antibiotiques chez les animaux et dans l'environnement en France
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