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An overview of advances in soil microbial diversity of urban environment

https://doi.org/10.17520/biods.2022186

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Soil Science Society of America Journal

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Comparison of Soil Bacterial Communities Under Diverse Agricultural Land Management and Crop Production Practices

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Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

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Soil enzymatic response to addition of heavy metals with organic residues

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Preliminary assessment of arbuscular mycorrhizal fungal diversity and community structure in an urban ecosystem

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Quercus rubra-associated ectomycorrhizal fungal communities of disturbed urban sites and mature forests

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Distribution and risks of polycyclic aromatic hydrocarbons in suburban and rural soils of Beijing with various land uses

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Fungal and bacterial contributions to codenitrification emissions of N2O and N2 following urea deposition to soil

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The use of gradient analysis studies in advancing our understanding of the ecology of urbanizing landscapes: current status and future directions

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What is the role of trees and remnant vegetation in attracting people to urban parks?

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Rhizosphere microbial community and its response to plant species and soil history

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Habitat structure: A fundamental concept and framework for urban soil ecology

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Effects of urbanization on species richness: A review of plants and animals

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Effect of soil sealing on the microbial biomass, N transformation and related enzyme activities at various depths of soils in urban area of Beijing, China

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Ecosystem services provided by soils of urban, industrial, traffic, mining, and military areas (SUITMAs)

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Characterizing urban soils in New York City: profile properties and bacterial communities

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Urbanization as a major cause of biotic homogenization

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Urban wildlife research: Past, present, and future

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Microbial indicators of heavy metal contamination in urban and rural soils

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Soil organic carbon distribution in roadside soils of Singapore

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Antibiotic resistance in urban green spaces mirrors the pattern of industrial distribution

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Transfer of environmental microbes to the skin and respiratory tract of humans after urban green space exposure

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Concentrations of lead, cadmium and barium in urban garden-grown vegetables: The impact of soil variables

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Urbanization significantly impacts the connectivity of soil microbes involved in nitrogen dynamics at a watershed scale

inferredcites →https://doi.org/10.1016/j.jenvman.2015.05.002openalex-snapshot

Habitat complexity influences fine scale hydrological processes and the incidence of stormwater runoff in managed urban ecosystems

inferredcites →https://doi.org/10.1016/j.jenvman.2019.04.111openalex-snapshot

Soil microbial response to metal contamination in a vegetated and urban brownfield

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Biotic homogenization and alien bird species along an urban gradient in South Africa

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Sampling adequacy estimation for plant species composition by accumulation curves—A case study of urban vegetation in Beijing, China

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Biodiversity in urban ecosystems: Plants and macromycetes as indicators for conservation planning in the city of Coimbra (Portugal)

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Sensitivity of bats to urbanization: a review

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Distinguishing urban soils with physical, chemical, and biological properties

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Composition and interaction frequencies in soil bacterial communities change in association with urban park age in Beijing

inferredcites →https://doi.org/10.1016/j.scitotenv.2011.08.053openalex-snapshot

Ecological risk assessment of urban and industrial systems: A review

inferredcites →https://doi.org/10.1016/j.scitotenv.2014.11.064openalex-snapshot

Health risk to residents and stimulation to inherent bacteria of various heavy metals in soil

inferredcites →https://doi.org/10.1016/j.soilbio.2003.09.011openalex-snapshot

Variations of soluble organic nitrogen and microbial nitrogen in deciduous forest soils along an urban–rural gradient

inferredcites →https://doi.org/10.1016/j.soilbio.2006.02.009openalex-snapshot

Rapid effects of plant species diversity and identity on soil microbial communities in experimental grassland ecosystems

inferredcites →https://doi.org/10.1016/j.soilbio.2008.10.001openalex-snapshot

Abiotic conditions and plant cover differentially affect microbial biomass and community composition on dune gradients

inferredcites →https://doi.org/10.1016/j.soilbio.2011.09.003openalex-snapshot

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

inferredcites →https://doi.org/10.1016/j.soilbio.2012.03.011openalex-snapshot

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

inferredcites →https://doi.org/10.1016/j.soilbio.2012.07.013openalex-snapshot

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

inferredcites →https://doi.org/10.1016/j.tree.2005.12.006openalex-snapshot

A distinct urban biogeochemistry?

inferredcites →https://doi.org/10.1016/j.ufug.2017.10.012openalex-snapshot

Plant and microbial biodiversity in urban forests and public gardens: Insights for cities’ sustainable development

inferredcites →https://doi.org/10.1016/s0048-9697(98)00112-0openalex-snapshot

The overlooked contribution of compost application to the trace element load in the urban soil of Madrid (Spain)

inferredcites →https://doi.org/10.1016/s0169-2046(00)00037-2openalex-snapshot

Biodiversity concepts and urban ecosystems

inferredcites →https://doi.org/10.1016/s0169-5347(99)01679-1openalex-snapshot

Biotic homogenization: a few winners replacing many losers in the next mass extinction

inferredcites →https://doi.org/10.1016/s0960-9822(09)00431-xopenalex-snapshot

Proceedings of the National Academy of Sciences, USA

inferredcites →https://doi.org/10.1021/acs.est.7b06417openalex-snapshot

Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces

inferredcites →https://doi.org/10.1021/es502615eopenalex-snapshot

High Throughput Profiling of Antibiotic Resistance Genes in Urban Park Soils with Reclaimed Water Irrigation

inferredcites →https://doi.org/10.1038/ismej.2007.9openalex-snapshot

Microbial ecology of biological invasions

inferredcites →https://doi.org/10.1038/ismej.2009.47openalex-snapshot

Changes in land use alter the structure of bacterial communities in Western Amazon soils

inferredcites →https://doi.org/10.1038/ismej.2015.152openalex-snapshot

Urban stress is associated with variation in microbial species composition—but not richness—in Manhattan

inferredcites →https://doi.org/10.1038/nature08058openalex-snapshot

Microbial community structure and its functional implications

inferredcites →https://doi.org/10.1038/nature13377openalex-snapshot

Bacterial phylogeny structures soil resistomes across habitats

inferredcites →https://doi.org/10.1038/ncomms10541openalex-snapshot

Microbial diversity drives multifunctionality in terrestrial ecosystems

inferredcites →https://doi.org/10.1038/s41559-017-0123openalex-snapshot

Urbanization erodes ectomycorrhizal fungal diversity and may cause microbial communities to converge

inferredcites →https://doi.org/10.1038/s41586-018-0358-xopenalex-snapshot

Globally rising soil heterotrophic respiration over recent decades

inferredcites →https://doi.org/10.1038/s41598-019-44097-3openalex-snapshot

Spending at least 120 minutes a week in nature is associated with good health and wellbeing

inferredcites →https://doi.org/10.1038/s41598-021-88839-8openalex-snapshot

Urbanization pressures alter tree rhizosphere microbiomes

inferredcites →https://doi.org/10.1038/srep38811openalex-snapshot

Urban-development-induced Changes in the Diversity and Composition of the Soil Bacterial Community in Beijing

inferredcites →https://doi.org/10.1038/srep44049openalex-snapshot

Changes in land use driven by urbanization impact nitrogen cycling and the microbial community composition in soils

inferredcites →https://doi.org/10.1073/pnas.0507535103openalex-snapshot

The diversity and biogeography of soil bacterial communities

inferredcites →https://doi.org/10.1073/pnas.0611525104openalex-snapshot

Global patterns in bacterial diversity

inferredcites →https://doi.org/10.1073/pnas.0805600105openalex-snapshot

Links between plant litter chemistry, species diversity, and below-ground ecosystem function

inferredcites →https://doi.org/10.1073/pnas.1205624109openalex-snapshot

Environmental biodiversity, human microbiota, and allergy are interrelated

inferredcites →https://doi.org/10.1080/24749508.2018.1438743openalex-snapshot

Change in soil microbial biomass along a rural-urban gradient in Varanasi (U.P., India)

inferredcites →https://doi.org/10.1093/femsec/fiaa041openalex-snapshot

From pine to pasture: land use history has long-term impacts on soil bacterial community composition and functional potential

inferredcites →https://doi.org/10.1093/femsec/fiaa106openalex-snapshot

Urbanization and Carpobrotus edulis invasion alter the diversity and composition of soil bacterial communities in coastal areas

inferredcites →https://doi.org/10.1097/00010694-200001000-00005openalex-snapshot

URBAN SOIL MANAGEMENT: A GROWING CONCERN

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Microbial Properties of Urban Soils With Different Land-Use History in New Moscow

inferredcites →https://doi.org/10.1098/rspb.2014.1988openalex-snapshot

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

inferredcites →https://doi.org/10.1111/1462-2920.13660openalex-snapshot

Soil microbial communities are shaped by vegetation type and park age in cities under cold climate

inferredcites →https://doi.org/10.1111/1574-6941.12215openalex-snapshot

Does urbanization shape bacterial community composition in urban park soils? A case study in 16 representative Chinese cities based on the pyrosequencing method

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Green areas around homes reduce atopic sensitization in children

inferredcites →https://doi.org/10.1111/ele.12381openalex-snapshot

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

inferredcites →https://doi.org/10.1111/j.1442-9993.2006.01586.xopenalex-snapshot

Advancing urban ecological studies: Frameworks, concepts, and results from the Baltimore Ecosystem Study

inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02277.xopenalex-snapshot

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00654.xopenalex-snapshot

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

inferredcites →https://doi.org/10.1111/j.1574-6976.2006.00018.xopenalex-snapshot

Microbial degradation of organophosphorus compounds

inferredcites →https://doi.org/10.1111/rec.13175openalex-snapshot

Revegetation of urban green space rewilds soil microbiotas with implications for human health and urban design

inferredcites →https://doi.org/10.1126/sciadv.aba2578openalex-snapshot

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children

inferredcites →https://doi.org/10.1126/science.1118176openalex-snapshot

Exploring Microbial Diversity--A Vast Below

inferredcites →https://doi.org/10.1126/science.1150195openalex-snapshot

Global Change and the Ecology of Cities

inferredcites →https://doi.org/10.1128/aem.00287-17openalex-snapshot

Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

inferredcites →https://doi.org/10.1128/mbio.01017-13openalex-snapshot

Diverse Antibiotic Resistance Genes in Dairy Cow Manure

inferredcites →https://doi.org/10.1128/msystems.00195-16openalex-snapshot

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome

inferredcites →https://doi.org/10.1201/b11647-17openalex-snapshot

Environmental monitoring and assessment

inferredcites →https://doi.org/10.13227/j.hjkx.202104273openalex-snapshot

[Effects of Heavy Metal Content on Fungal Community Structure in Urban Soil].

inferredcites →https://doi.org/10.13287/j.1001-9332.202101.034openalex-snapshot

[Variation of subtropical forest soil microbial biomass and soil microbial community functional characteristics along an urban-rural gradient].

inferredcites →https://doi.org/10.1371/journal.pone.0041729openalex-snapshot

The Effect of Urbanization on Ant Abundance and Diversity: A Temporal Examination of Factors Affecting Biodiversity

inferredcites →https://doi.org/10.1371/journal.pone.0058020openalex-snapshot

Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks

inferredcites →https://doi.org/10.1641/0006-3568(2002)052[0883:ubac]2.0.co;2openalex-snapshot

Urbanization, Biodiversity, and Conservation

inferredcites →https://doi.org/10.18356/13bf5476-enopenalex-snapshot

World Population Prospects 2019: Highlights

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EXOTIC PLANT SPECIES ALTER THE MICROBIAL COMMUNITY STRUCTURE AND FUNCTION IN THE SOIL

inferredcites →https://doi.org/10.1890/02-0433openalex-snapshot

PLANT DIVERSITY, SOIL MICROBIAL COMMUNITIES, AND ECOSYSTEM FUNCTION: ARE THERE ANY LINKS?

inferredcites →https://doi.org/10.1890/05-0383openalex-snapshot

ECOLOGICAL CONSEQUENCES OF CARBON SUBSTRATE IDENTITY AND DIVERSITY IN A LABORATORY STUDY

inferredcites →https://doi.org/10.1890/090220openalex-snapshot

Coupling biogeochemical cycles in urban environments: ecosystem services, green solutions, and misconceptions

inferredcites →https://doi.org/10.2136/sssaj2010.0171openalex-snapshot

Soil Habitat and Horizon Properties Impact Bacterial Diversity and Composition

inferredcites →https://doi.org/10.3389/fmicb.2016.01836openalex-snapshot

The Interaction between Plants and Bacteria in the Remediation of Petroleum Hydrocarbons: An Environmental Perspective

inferredcites →https://doi.org/10.3389/fmicb.2018.00084openalex-snapshot

Urbanization Reduces Transfer of Diverse Environmental Microbiota Indoors

inferredcites →https://doi.org/10.3389/fmicb.2018.00226openalex-snapshot

Impervious Surfaces Alter Soil Bacterial Communities in Urban Areas: A Case Study in Beijing, China

inferredcites →https://doi.org/10.3389/fmicb.2019.00982openalex-snapshot

Green Infrastructure Design Influences Communities of Urban Soil Bacteria

inferredcites →https://doi.org/10.3389/fmicb.2020.00912openalex-snapshot

Microbial Composition and Functional Diversity Differ Across Urban Green Infrastructure Types

inferredcites →https://doi.org/10.3389/fpls.2016.00755openalex-snapshot

Effect of Heavy Metals Pollution on Soil Microbial Diversity and Bermudagrass Genetic Variation

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The Composition and Diversity of Soil Bacterial and Fungal Communities Along an Urban-To-Rural Gradient in South China

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Sustainability of Urban Soil Management: Analysis of Soil Physicochemical Properties and Bacterial Community Structure under Different Green Space Types

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Implications of land ecosystem-atmosphere interactions for strategies for climate change adaptation and mitigation

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Effect of Urban Expansion on Arbuscular Mycorrhizal Fungal Mediation of Landscape Tree Growth

inferredcites →https://doi.org/10.5846/stxb202005121202openalex-snapshot

The characteristics of soil fungal community and effect factors under common tree species in urban parks of Beijing

inferredcites →https://doi.org/10.7287/peerj.preprints.3484openalex-snapshot

Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mycokeys.116.146683zenodo-depositor-declared

Biconidium sinense gen. et sp. nov. (Hypocreales, Bionectriaceae) and Didymocyrtis shanxiensis sp. nov. (Phaeosphaeriaceae, Didymocyrtis) isolated from urban soil in China

inferred← citeshttps://doi.org/10.1093/jpe/rtaf012openalex-snapshot

Variation in leaf construction cost and environmental drivers in China

inferred← citeshttps://doi.org/10.3390/microorganisms13081726openalex-snapshot

Deciphering Soil Keystone Microbial Taxa: Structural Diversity and Co-Occurrence Patterns from Peri-Urban to Urban Landscapes

inferred← citeshttps://doi.org/10.3390/microorganisms13092173openalex-snapshot

Analysis of Microbial Community Structure and Diversity in Different Soil Use Types in the Luo River Basin

inferred← citeshttps://doi.org/10.3390/su17104479openalex-snapshot

The Relationship Between Macroinvertebrate Diversity Indices and Community Stability in the North Canal River Basin of Urban Beijing, China

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