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VRP Assembler: Haplotype-Resolved de novo Assembly of Diploid and Polyploid Genomes Using Quantum Computing
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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New Hybrid Quantum Annealing Algorithms for Solving Vehicle Routing Problem
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The Haplotyping problem: An overview of computational models and solutions
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Haplotypic analysis of Wellcome Trust Case Control Consortium data
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Enhancing quantum annealing performance for the molecular similarity problem
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Quantum speedup of Monte Carlo integration with respect to the number of dimensions and its application to finance
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Assembly algorithms for next-generation sequencing data
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Quantum Computation and Quantum Information
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The state of quantum computing applications in health and medicine
inferredcites →https://doi.org/10.1038/nbt.2764openalex-snapshot
Genome assembly and haplotyping with Hi-C
inferredcites →https://doi.org/10.1038/nbt.4277openalex-snapshot
De novo assembly of haplotype-resolved genomes with trio binning
inferredcites →https://doi.org/10.1038/nmeth.1376openalex-snapshot
Sense from sequence reads: methods for alignment and assembly
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A diploid assembly-based benchmark for variants in the major histocompatibility complex
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Scaling advantage over path-integral Monte Carlo in quantum simulation of geometrically frustrated magnets
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Quantum supremacy using a programmable superconducting processor
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Quantum computational advantage with a programmable photonic processor
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Practical quantum advantage in quantum simulation
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Quantum critical dynamics in a 5,000-qubit programmable spin glass
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Generation of genuine entanglement up to 51 superconducting qubits
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
inferredcites →https://doi.org/10.1038/s41587-022-01261-xopenalex-snapshot
Haplotype-resolved assembly of diploid genomes without parental data
inferredcites →https://doi.org/10.1038/s41588-021-00895-yopenalex-snapshot
Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis
inferredcites →https://doi.org/10.1038/s41592-020-01004-3openalex-snapshot
Quantum computing at the frontiers of biological sciences
inferredcites →https://doi.org/10.1038/s41592-020-01056-5openalex-snapshot
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
inferredcites →https://doi.org/10.1038/s41598-021-82740-0openalex-snapshot
Traffic signal optimization on a square lattice with quantum annealing
inferredcites →https://doi.org/10.1038/s41598-021-88321-5openalex-snapshot
Genome assembly using quantum and quantum-inspired annealing
inferredcites →https://doi.org/10.1038/s43588-021-00024-zopenalex-snapshot
Towards practical applications in quantum computational biology
inferredcites →https://doi.org/10.1038/s43588-022-00311-3openalex-snapshot
Challenges and opportunities in quantum machine learning
inferredcites →https://doi.org/10.1089/cmb.2012.0084openalex-snapshot
HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data
inferredcites →https://doi.org/10.1089/cmb.2014.0157openalex-snapshot
W hats H ap : Weighted Haplotype Assembly for Future-Generation Sequencing Reads
inferredcites →https://doi.org/10.1089/cmb.2015.0220openalex-snapshot
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes
inferredcites →https://doi.org/10.1093/bfgp/elr035openalex-snapshot
Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph
inferredcites →https://doi.org/10.1093/bib/bbac437openalex-snapshot
Quantum computing algorithms: getting closer to critical problems in computational biology
inferredcites →https://doi.org/10.1093/bioinformatics/btn298openalex-snapshot
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem
inferredcites →https://doi.org/10.1093/bioinformatics/btw286openalex-snapshot
SimLoRD: Simulation of Long Read Data
inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot
Minimap2: pairwise alignment for nucleotide sequences
inferredcites →https://doi.org/10.1098/rsif.2022.0541openalex-snapshot
Biology and medicine in the landscape of quantum advantages
inferredcites →https://doi.org/10.1101/gr.101360.109openalex-snapshot
Assembly of large genomes using second-generation sequencing
inferredcites →https://doi.org/10.1101/gr.213462.116openalex-snapshot
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot
Fast and accurate de novo genome assembly from long uncorrected reads
inferredcites →https://doi.org/10.1103/physreve.58.5355openalex-snapshot
Quantum annealing in the transverse Ising model
inferredcites →https://doi.org/10.1103/physrevlett.109.050501openalex-snapshot
Quantum Speedup by Quantum Annealing
inferredcites →https://doi.org/10.1103/physrevx.10.021067openalex-snapshot
Quantum Approximate Optimization Algorithm: Performance, Mechanism, and Implementation on Near-Term Devices
inferredcites →https://doi.org/10.1103/revmodphys.90.015002openalex-snapshot
Adiabatic quantum computation
inferredcites →https://doi.org/10.1103/revmodphys.92.015003openalex-snapshot
Quantum computational chemistry
inferredcites →https://doi.org/10.1126/science.abe8770openalex-snapshot
Quantum computational advantage using photons
inferredcites →https://doi.org/10.1143/jpsj.5.435openalex-snapshot
On the Adiabatic Theorem of Quantum Mechanics
inferredcites →https://doi.org/10.1143/jpsj.74.1649openalex-snapshot
Residual Energies after Slow Quantum Annealing
inferredcites →https://doi.org/10.1145/2506583.2506592openalex-snapshot
Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes
inferredcites →https://doi.org/10.1186/1471-2105-11-345openalex-snapshot
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
inferredcites →https://doi.org/10.1186/s12859-022-04661-7openalex-snapshot
Algorithm for DNA sequence assembly by quantum annealing
inferredcites →https://doi.org/10.1371/journal.pcbi.1007273openalex-snapshot
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
inferredcites →https://doi.org/10.1371/journal.pone.0234470openalex-snapshot
Minimum error correction-based haplotype assembly: Considerations for long read data
inferredcites →https://doi.org/10.1371/journal.pone.0249850openalex-snapshot
QuASeR: Quantum Accelerated de novo DNA sequence reconstruction
inferredcites →https://doi.org/10.1504/ijcbdd.2014.066543openalex-snapshot
Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments
inferredcites →https://doi.org/10.3389/fphy.2014.00005openalex-snapshot
Ising formulations of many NP problems
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A practical heuristic for finding graph minors
inferredcites →https://doi.org/10.48550/arxiv.1411.4028openalex-snapshot
A Quantum Approximate Optimization Algorithm
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Efficient Combinatorial Optimization Using Quantum Annealing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Architecture for Health Initiative (Arch4Health): Computational Challenges in Health-Related Applications and the Role of Computer Architecture in Addressing Them
inferred← citeshttps://doi.org/10.64898/2026.09.04.749434openalex-snapshot
Scaling Quantum Optimisation Beyond Hardware Limits for Real-World Scientific Workloads: Genome Assembly on Current Quantum Hardware
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