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Genome Analysis Deciphered Chryseobacterium Indicum is a Defined Species Associated with Freshwater Pufferfish

https://doi.org/10.2139/ssrn.4674310
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Outgoing claims: the papers this work cites, builds on, or argues with.

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UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
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Isolation and characterization of flexirubin type pigment from Chryseobacterium sp. UTM-3T
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Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals
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Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C.…
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-extracted
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-extracted
Genomic insights that advance the species definition for prokaryotes
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A Detailed Phenotypic Characterisation of the Type Strains of Halomonas Species
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-extracted
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-extracted
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-extracted
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gbe/evz178openalex-extracted
Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter
inferredcites →https://doi.org/10.1093/nar/26.2.544openalex-extracted
Microbial gene identification using interpolated Markov models
inferredcites →https://doi.org/10.1093/nar/gki008openalex-extracted
VFDB: a reference database for bacterial virulence factors
inferredcites →https://doi.org/10.1093/nar/gkt1226openalex-extracted
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
inferredcites →https://doi.org/10.1093/nar/gkw569openalex-extracted
NCBI prokaryotic genome annotation pipeline
inferredcites →https://doi.org/10.1097/00005792-199701000-00003openalex-extracted
Chryseobacterium meningosepticum: An Emerging Pathogen Among Immunocompromised Adults Report of 6 Cases and Literature Review
inferredcites →https://doi.org/10.1099/ijs.0.007021-0openalex-extracted
Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish
inferredcites →https://doi.org/10.1099/ijs.0.008250-0openalex-extracted
Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium
inferredcites →https://doi.org/10.1099/ijs.0.014035-0openalex-extracted
Gulbenkiania indica sp. nov., isolated from a sulfur spring
inferredcites →https://doi.org/10.1099/ijs.0.02232-0openalex-extracted
Chryseobacterium joostei sp. nov., isolated from the dairy environment
inferredcites →https://doi.org/10.1099/ijs.0.027201-0openalex-extracted
Chryseobacterium vietnamense sp. nov., isolated from forest soil
inferredcites →https://doi.org/10.1099/ijs.0.036582-0openalex-extracted
Marinomonas hwangdonensis sp. nov., isolated from seawater
inferredcites →https://doi.org/10.1099/ijs.0.036699-0openalex-extracted
Chryseobacterium viscerum sp. nov., isolated from diseased fish
inferredcites →https://doi.org/10.1099/ijs.0.054809-0openalex-extracted
Marinomonas fungiae sp. nov., isolated from the coral Fungia echinata from the Andaman Sea
inferredcites →https://doi.org/10.1099/ijs.0.056499-0openalex-extracted
Halomonas songnenensis sp. nov., a moderately halophilic bacterium isolated from saline and alkaline soils
inferredcites →https://doi.org/10.1099/ijs.0.65104-0openalex-extracted
Chryseobacterium luteum sp. nov., associated with the phyllosphere of grasses
inferredcites →https://doi.org/10.1099/ijs.0.65276-0openalex-extracted
Chryseobacterium arothri sp. nov., isolated from the kidneys of a pufferfish
inferredcites →https://doi.org/10.1099/ijs.0.65362-0openalex-extracted
Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants
inferredcites →https://doi.org/10.1099/ijsem.0.004833openalex-extracted
Description of Acinetobacter kanungonis sp. nov., based on phylogenomic analysis
inferredcites →https://doi.org/10.1101/096412openalex-extracted
inferredcites →https://doi.org/10.1111/1574-6968.12033openalex-extracted
Presence of SXT integrating conjugative element in marine bacteria isolated from the mucus of the coralFungia echinatafrom Andaman Sea
inferredcites →https://doi.org/10.1128/am.28.2.226-231.1974openalex-extracted
Simplified Approach to Identification of Aerobic Actinomycetes by Thin-Layer Chromatography
inferredcites →https://doi.org/10.1128/jb.187.18.6258-6264.2005openalex-extracted
Towards a Genome-Based Taxonomy for Prokaryotes
inferredcites →https://doi.org/10.1128/spectrum.01221-21openalex-extracted
Pufferfish (Tetraodon cutcutia) Sampled from a Freshwater River Serves as an Intermediate Reservoir of a Sucrose Nonfermenting Variant of Vibrio cholerae PS-4
inferredcites →https://doi.org/10.1139/o59-099openalex-extracted
A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION
inferredcites →https://doi.org/10.1139/y59-099openalex-extracted
inferredcites →https://doi.org/10.1155/2014/837891openalex-extracted
Colorful World of Microbes: Carotenoids and Their Applications
inferredcites →https://doi.org/10.1186/1471-2105-14-60openalex-extracted
Genome sequence-based species delimitation with confidence intervals and improved distance functions
inferredcites →https://doi.org/10.1186/s12915-019-0632-xopenalex-extracted
The golden death bacillus Chryseobacterium nematophagum is a novel matrix digesting pathogen of nematodes
inferredcites →https://doi.org/10.12659/ajcr.921172openalex-extracted
Chryseobacterium gleum Isolation from Respiratory Culture Following Community-Acquired Pneumonia
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-extracted
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.3201/eid0605.000506openalex-extracted
Atypical Chryseobacterium meningosepticum and Meningitis and Sepsis in Newborns and the Immunocompromised, Taiwan
inferredcites →https://doi.org/10.3354/dao02819openalex-extracted
Polyphasic characterization reveals the presence of novel fish-associated Chryseobacterium spp. in the Great Lakes of North America
inferredcites →https://doi.org/10.7759/cureus.6720openalex-extracted
Chryseobacterium indologenes, an Emerging Bacteria: A Case Report and Review of Literature
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
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