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Environmental DNA Outperforms Underwater Visual Census for Holistic Monitoring of Functional Dimension in Coral Reefs

https://doi.org/10.2139/ssrn.4774659
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9781444325508.ch4openalex-extracted
Coral Reef Biodiversity
inferredcites →https://doi.org/10.1002/ece3.7057openalex-extracted
Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia)
inferredcites →https://doi.org/10.1002/edn3.140openalex-extracted
Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes
inferredcites →https://doi.org/10.1002/edn3.185openalex-extracted
Environmental DNA (eDNA) as a tool for assessing fish biomass: A review of approaches and future considerations for resource surveys
inferredcites →https://doi.org/10.1007/s00227-017-3147-4openalex-extracted
Seawater environmental DNA reflects seasonality of a coastal fish community
inferredcites →https://doi.org/10.1016/b978-0-12-407863-5.00021-6openalex-extracted
Microbial Community Analysis Using MEGAN
inferredcites →https://doi.org/10.1016/j.cub.2017.04.060openalex-extracted
Marine Biodiversity, Biogeography, Deep-Sea Gradients, and Conservation
inferredcites →https://doi.org/10.1016/j.gecco.2019.e00547openalex-extracted
Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA
inferredcites →https://doi.org/10.1016/j.marpol.2020.104331openalex-extracted
Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring
inferredcites →https://doi.org/10.1016/j.marpolbul.2019.110623openalex-extracted
Polycyclic aromatic hydrocarbons in marine organisms from Mischief Reef in the South China sea: Implications for sources and human exposure
inferredcites →https://doi.org/10.1016/j.tree.2012.10.004openalex-extracted
A functional approach reveals community responses to disturbances
inferredcites →https://doi.org/10.1016/s0921-8009(99)00015-4openalex-extracted
Ecosystem services generated by fish populations
inferredcites →https://doi.org/10.1038/ncomms14087openalex-extracted
Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity
inferredcites →https://doi.org/10.1038/s41467-022-28034-zopenalex-extracted
Microbiome differential abundance methods produce different results across 38 datasets
inferredcites →https://doi.org/10.1038/s41598-017-12501-5openalex-extracted
Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
inferredcites →https://doi.org/10.1038/s41598-019-47899-7openalex-extracted
Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
inferredcites →https://doi.org/10.1038/s44183-023-00015-9openalex-extracted
Engaging the tropical majority to make ocean governance and science more equitable and effective
inferredcites →https://doi.org/10.1038/sj.hdy.6885841openalex-extracted
Island Biogeography — Ecology, Evolution and Conservation
inferredcites →https://doi.org/10.1073/pnas.1317625111openalex-extracted
Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-extracted
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-extracted
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1098/rspb.2011.1906openalex-extracted
Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs
inferredcites →https://doi.org/10.1111/1755-0998.12428openalex-extracted
obitools : a unix ‐inspired software package for DNA metabarcoding
inferredcites →https://doi.org/10.1111/1755-0998.12483openalex-extracted
A framework for estimating the sensitivity of eDNA surveys
inferredcites →https://doi.org/10.1111/1755-0998.12971openalex-extracted
Environmental DNA metabarcoding studies are critically affected by substrate selection
inferredcites →https://doi.org/10.1111/1755-0998.12982openalex-extracted
Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
inferredcites →https://doi.org/10.1111/1755-0998.13512openalex-extracted
Strategies for sample labelling and library preparation in DNA metabarcoding studies
inferredcites →https://doi.org/10.1111/2041-210x.12310openalex-extracted
BAT – Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity
inferredcites →https://doi.org/10.1111/cobi.13183openalex-extracted
Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity
inferredcites →https://doi.org/10.1111/cobi.13802openalex-extracted
Use of environmental DNA in assessment of fish functional and phylogenetic diversity
inferredcites →https://doi.org/10.1111/ecog.01814openalex-extracted
PhyloMeasures: a package for computing phylogenetic biodiversity measures and their statistical moments
inferredcites →https://doi.org/10.1111/faf.12286openalex-extracted
The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries
inferredcites →https://doi.org/10.1111/faf.12553openalex-extracted
Sifting environmental DNA metabarcoding data sets for rapid reconstruction of marine food webs
inferredcites →https://doi.org/10.1111/j.1095-8649.2010.02726.xopenalex-extracted
Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05542.xopenalex-extracted
Environmental DNA
inferredcites →https://doi.org/10.1111/mec.15661openalex-extracted
Environmental DNA effectively captures functional diversity of coastal fish communities
inferredcites →https://doi.org/10.1126/sciadv.aap9661openalex-extracted
Environmental DNA illuminates the dark diversity of sharks
inferredcites →https://doi.org/10.1126/science.1085046openalex-extracted
Climate Change, Human Impacts, and the Resilience of Coral Reefs
inferredcites →https://doi.org/10.1186/s13104-016-1900-2openalex-extracted
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
inferredcites →https://doi.org/10.1371/journal.pbio.0030422openalex-extracted
DNA Barcoding: Error Rates Based on Comprehensive Sampling
inferredcites →https://doi.org/10.1371/journal.pbio.0060054openalex-extracted
Shifting Baselines, Local Impacts, and Global Change on Coral Reefs
inferredcites →https://doi.org/10.1371/journal.pbio.1001569openalex-extracted
Rare Species Support Vulnerable Functions in High-Diversity Ecosystems
inferredcites →https://doi.org/10.1371/journal.pone.0026735openalex-extracted
Functional Redundancy Patterns Reveal Non-Random Assembly Rules in a Species-Rich Marine Assemblage
inferredcites →https://doi.org/10.1371/journal.pone.0087830openalex-extracted
Machine Learning Techniques Accurately Classify Microbial Communities by Bacterial Vaginosis Characteristics
inferredcites →https://doi.org/10.1371/journal.pone.0170945openalex-extracted
Surveying Europe’s Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA
inferredcites →https://doi.org/10.1371/journal.pone.0191737openalex-extracted
Seasonal variation in environmental DNA detection in sediment and water samples
inferredcites →https://doi.org/10.1371/journal.pone.0200177openalex-extracted
Over 2.5 million COI sequences in GenBank and growing
inferredcites →https://doi.org/10.1890/11-0599.1openalex-extracted
Defining conservation priorities for freshwater fishes according to taxonomic, functional, and phylogenetic diversity
inferredcites →https://doi.org/10.3354/meps08601openalex-extracted
Global variation in marine fish body size and its role in biodiversity–ecosystem functioning
inferredcites →https://doi.org/10.3354/meps08831openalex-extracted
Diver ecotourism and disturbance to reef fish spawning aggregations: It is better to be disturbed than to be dead
inferredcites →https://doi.org/10.3354/meps206227openalex-extracted
Reef fish assemblages: a re-evaluation using enclosed rotenone stations
inferredcites →https://doi.org/10.3389/fmars.2016.00283openalex-extracted
Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem
inferredcites →https://doi.org/10.3389/fmars.2019.00580openalex-extracted
Coral Reef Monitoring, Reef Assessment Technologies, and Ecosystem-Based Management
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