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Phylogenomic Analyses of the Pantropical Platycerium Desv. (Platycerioideae) Reveal Their Complex Evolution and Historical Biogeography

https://doi.org/10.2139/ssrn.4785998
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A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families
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Low-copy nuclear sequence data confirm complex patterns of farina evolution in notholaenid ferns (Pteridaceae)
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Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes
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Nuclear loci developed from multiple transcriptomes yield high resolution in phylogeny of scaly tree ferns (Cyatheaceae) from China and Vietnam
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Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex
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Evidence for the discontinuity of plastids in the sexual reproduction of a plant
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Gone with the bird: Late tertiary and quaternary intercontinental long‐distance dispersal and allopolyploidization in plants
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The Ailao Shan/Red River metamorphic belt: Tertiary left-lateral shear between Indochina and South China
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Ferns diversified in the shadow of angiosperms
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One thousand plant transcriptomes and the phylogenomics of green plants
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Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers
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Patterns and Rates of Plastid rps12 Gene Evolution Inferred in a Phylogenetic Context using Plastomic Data of Ferns
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Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
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Modes and mechanisms of speciation in pteridophytes: Implications of contrasting patterns in ferns representing temperate and tropical habitats
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Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy
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The frequency of polyploid speciation in vascular plants
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Greater India Basin hypothesis and a two-stage Cenozoic collision between India and Asia
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Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes
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The complete mitochondrial genome of Dryopteris crassirhizoma Nakai (Dryopteridaceae, Dryopteris Adanson)
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Untangling the reticulate history of species complexes and horticultural breeds in Abelia (Caprifoliaceae)
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Widespread co-occurrence of multiple ploidy levels in fragile ferns (Cystopteris fragilis complex; Cystopteridaceae) probably stems from similar ecology of cytotypes, their efficient dispersal and inter-ploidy hybridization
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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Phybase: an R package for species tree analysis
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DendroPy: a Python library for phylogenetic computing
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treePL: divergence time estimation using penalized likelihood for large phylogenies
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Minimap2: pairwise alignment for nucleotide sequences
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fastp: an ultra-fast all-in-one FASTQ preprocessor
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Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity
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Large-scale phylogenomic analysis resolves a backbone phylogeny in ferns
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PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
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OrthoFinder: phylogenetic orthology inference for comparative genomics
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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
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Nuclear and plastid phylogenies suggest ancient intersubgeneric hybridization in the fern genus Pyrrosia (Polypodiaceae), with a classification of Pyrrosia based on molecular and non‐molecular evidence
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Chloroplast Genome Evolution in Early Diverged Leptosporangiate Ferns
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A Simple and Robust Statistical Test for Detecting the Presence of Recombination
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TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
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New Records for Platycerium andinum Baker in Peru
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1982. A Monograph of the Fern Genus Platycerium (Polypodiaceae)
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A Staghorn Fern (Platycerium) Hybrid
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Platycerium Update
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Morphology and Phylogeny of Platcerium Species
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Structural Variation of Plastomes Provides Key Insight Into the Deep Phylogeny of Ferns
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Phylotranscriptomics Illuminates the Placement of Whole Genome Duplications and Gene Retention in Ferns
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Transcriptome-Based Study on the Phylogeny and Hybridization of Marattialean Ferns (Marattiaceae)
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The evolutionary history of ferns inferred from 25 low‐copy nuclear genes
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