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Novel Approach to Exploring Protease Activity and Targets in Hiv-Associated Obstructive Lung Disease Using Combined Proteomic-Peptidomic Analysis
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/bimj.4710330314openalex-extracted
On Fisher's Method of Combining p‐Values
inferredcites →https://doi.org/10.1016/j.cbpa.2006.11.037openalex-extracted
Proteomic discovery of protease substrates
inferredcites →https://doi.org/10.1016/j.rmed.2011.05.009openalex-extracted
Prevalence of obstructive lung disease in HIV population: A cross sectional study
inferredcites →https://doi.org/10.1016/s2214-109x(17)30451-5openalex-extracted
Prevalence of chronic obstructive pulmonary disease in the global population with HIV: a systematic review and meta-analysis
inferredcites →https://doi.org/10.1021/ac0341261openalex-extracted
A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
inferredcites →https://doi.org/10.1021/acs.jproteome.0c00544openalex-extracted
Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00702openalex-extracted
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data
inferredcites →https://doi.org/10.1038/nmeth.4256openalex-extracted
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
inferredcites →https://doi.org/10.1038/nmeth1113openalex-extracted
Semi-supervised learning for peptide identification from shotgun proteomics datasets
inferredcites →https://doi.org/10.1038/nrc1821openalex-extracted
Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy
inferredcites →https://doi.org/10.1038/nrm858openalex-extracted
Protease degradomics: A new challenge for proteomics
inferredcites →https://doi.org/10.1038/s41592-020-0912-yopenalex-extracted
Philosopher: a versatile toolkit for shotgun proteomics data analysis
inferredcites →https://doi.org/10.1074/mcp.m113.031591openalex-extracted
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
inferredcites →https://doi.org/10.1093/bioinformatics/btr499openalex-extracted
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
inferredcites →https://doi.org/10.1093/nar/gkx1134openalex-extracted
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
inferredcites →https://doi.org/10.1097/qad.0b013e32835e395dopenalex-extracted
The effect of HIV infection on longitudinal lung function decline among IDUs
inferredcites →https://doi.org/10.1111/hiv.12240openalex-extracted
Pulmonary function in an international sample of HIV ‐positive, treatment‐naïve adults with CD4 counts > 500 cells/μL: a substudy of the INSIGHT Strategic Timing of AntiRetroviral Treatment ( START ) trial
inferredcites →https://doi.org/10.1111/j.1440-1843.2010.01875.xopenalex-extracted
Laryngeal penetration and aspiration in individuals with stable COPD
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-extracted
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1136/thorax-2022-218910openalex-extracted
Faster lung function decline in people living with HIV despite adequate treatment: a longitudinal matched cohort study
inferredcites →https://doi.org/10.1136/thoraxjnl-2020-215866openalex-extracted
DNA methylation is associated with airflow obstruction in patients living with HIV
inferredcites →https://doi.org/10.1164/ajrccm/137.6.1417openalex-extracted
Regulation of the Procoagulant Activity within the Bronchoalveolar Compartment of Normal Human Lung
inferredcites →https://doi.org/10.1164/rccm.200912-1858ocopenalex-extracted
Pulmonary Function Abnormalities in HIV-Infected Patients during the Current Antiretroviral Therapy Era
inferredcites →https://doi.org/10.1164/rccm.201006-0836ocopenalex-extracted
HIV Infection and Risk for Incident Pulmonary Diseases in the Combination Antiretroviral Therapy Era
inferredcites →https://doi.org/10.1183/23120541.00332-2022openalex-extracted
Lung proteome and metabolome endotype in HIV-associated obstructive lung disease
inferredcites →https://doi.org/10.1186/1465-9921-7-53openalex-extracted
Role of apoptosis in the pathogenesis of COPD and pulmonary emphysema
inferredcites →https://doi.org/10.1186/s12014-023-09404-1openalex-extracted
An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples
inferredcites →https://doi.org/10.1186/s12890-020-01300-wopenalex-extracted
Cigarette smoke extract stimulates bronchial epithelial cells to undergo a SUMOylation turnover
inferredcites →https://doi.org/10.1186/s40168-016-0147-4openalex-extracted
Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection
inferredcites →https://doi.org/10.1189/jlb.0408240openalex-extracted
Up-regulation of alveolar macrophage matrix metalloproteinases in HIV1+ smokers with early emphysema
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