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Correlation between DNA Methylation and Transcriptomic Changes in Golden Barramundi (Lates Calcarifer): An Integrated Approach

https://doi.org/10.2139/ssrn.4877924
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The Colors of Mice
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Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl‐CpG binding protein.
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The physiology of flatfish chromatophores
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Functional conservation and divergence of color‐pattern‐related agouti family genes in teleost fishes
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Melanogenesis in frog skin
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Variations in DNA (cytosine-5)-methyltransferase-1 expression during oogenesis and early development of the zebrafish
inferredcites →https://doi.org/10.1007/s00427-019-00639-3openalex-extracted
Transcriptome analysis provides insight into the role of the melanin pathway in two differently pigmented strains of the turtle Pelodiscus sinensis
inferredcites →https://doi.org/10.1007/s11427-018-9404-7openalex-extracted
Targeted disruption of tyrosinase causes melanin reduction in Carassius auratus cuvieri and its hybrid progeny
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THE SKIN | Coloration and Chromatophores in Fishes
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Ion transport in pigmentation
inferredcites →https://doi.org/10.1016/j.aquaculture.2024.740820openalex-extracted
Revealing the genetic and molecular drivers behind golden and platinum coloration in barramundi (Lates calcarifer)
inferredcites →https://doi.org/10.1016/j.arr.2021.101349openalex-extracted
Epigenetic regulation of melanogenesis
inferredcites →https://doi.org/10.1016/j.cbpa.2017.06.001openalex-extracted
Fish pigmentation and the melanocortin system
inferredcites →https://doi.org/10.1016/j.neuroscience.2004.06.008openalex-extracted
Potassium buffering in the central nervous system
inferredcites →https://doi.org/10.1016/j.repbre.2022.05.001openalex-extracted
Duplicated Tyr disruption using CRISPR/Cas9 reveals melanophore formation in Oujiang color common carp (Cyprinus carpio var. color)
inferredcites →https://doi.org/10.1016/j.tree.2020.12.012openalex-extracted
Decoding the Evolution of Melanin in Vertebrates
inferredcites →https://doi.org/10.1016/j.ydbio.2008.02.058openalex-extracted
Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest
inferredcites →https://doi.org/10.1016/j.ydbio.2018.03.014openalex-extracted
CRISPR mutagenesis confirms the role of oca2 in melanin pigmentation in Astyanax mexicanus
inferredcites →https://doi.org/10.1016/s0955-0674(99)80073-8openalex-extracted
Inwardly rectifying potassium channels
inferredcites →https://doi.org/10.1038/366362a0openalex-extracted
Role for DNA methylation in genomic imprinting
inferredcites →https://doi.org/10.1038/npp.2012.112openalex-extracted
DNA Methylation and Its Basic Function
inferredcites →https://doi.org/10.1038/sj.embor.7400757openalex-extracted
Spot pattern of leopard Danio is caused by mutation in the zebrafish connexin41.8 gene
inferredcites →https://doi.org/10.1091/mbc.e15-12-0821openalex-extracted
Pax7 is required for establishment of the xanthophore lineage in zebrafish embryos
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-extracted
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-extracted
MultiQC: summarize analysis results for multiple tools and samples in a single report
inferredcites →https://doi.org/10.1093/bioinformatics/btz931openalex-extracted
ShinyGO: a graphical gene-set enrichment tool for animals and plants
inferredcites →https://doi.org/10.1093/carcin/21.3.461openalex-extracted
DNA methylation: past, present and future directions
inferredcites →https://doi.org/10.1093/nar/gkab447openalex-extracted
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis
inferredcites →https://doi.org/10.1093/nar/gkac247openalex-extracted
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
inferredcites →https://doi.org/10.1096/fasebj.12.11.949openalex-extracted
Maternal epigenetics and methyl supplements affect agouti gene expression in A vy /a mice
inferredcites →https://doi.org/10.1111/age.13071openalex-extracted
Analysis of recently duplicated TYRP1 genes and their effect on the formation of black patches in Oujiang‐color common carp ( Cyprinus carpio var. color )
inferredcites →https://doi.org/10.1111/j.1600-0749.2004.00166.xopenalex-extracted
Molecular Cloning, Gene Expression in Albino Mutants and Gene Knockdown Studies of Tyrosinase mRNA in Rainbow Trout
inferredcites →https://doi.org/10.1111/j.1600-0749.2004.00174.xopenalex-extracted
Genetics and Evolution of Pigment Patterns in Fish
inferredcites →https://doi.org/10.1111/j.1755-148x.2009.00614.xopenalex-extracted
Pigmentary function and evolution of tyrp1 gene duplicates in fish
inferredcites →https://doi.org/10.1111/pcmr.12192openalex-extracted
Tetraspanin 3c requirement for pigment cell interactions and boundary formation in zebrafish adult pigment stripes
inferredcites →https://doi.org/10.1111/pcmr.12272openalex-extracted
A dominant mutation in tyrp1 A leads to melanophore death in zebrafish
inferredcites →https://doi.org/10.1152/physiologyonline.1999.14.5.215openalex-extracted
G Protein Regulation of Inwardly Rectifying K+ Channels
inferredcites →https://doi.org/10.1186/s12863-017-0564-9openalex-extracted
Comparative Transcriptome and DNA methylation analyses of the molecular mechanisms underlying skin color variations in Crucian carp (Carassius carassius L.)
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-extracted
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1201/b15974openalex-extracted
Biology and Culture of Asian Seabass Lates Calcarifer
inferredcites →https://doi.org/10.1371/journal.pgen.0020197openalex-extracted
Pigment Pattern in jaguar/obelix Zebrafish Is Caused by a Kir7.1 Mutation: Implications for the Regulation of Melanosome Movement
inferredcites →https://doi.org/10.1371/journal.pone.0080823openalex-extracted
A Potential Benefit of Albinism in Astyanax Cavefish: Downregulation of the oca2 Gene Increases Tyrosine and Catecholamine Levels as an Alternative to Melanin Synthesis
inferredcites →https://doi.org/10.3389/fimmu.2021.587440openalex-extracted
Transcriptome and Differential Methylation Integration Analysis Identified Important Differential Methylation Annotation Genes and Functional Epigenetic Modules Related to Vitiligo
inferredcites →https://doi.org/10.3390/ijms160921310openalex-extracted
Gene Expression Variations of Red—White Skin Coloration in Common Carp (Cyprinus carpio)
inferredcites →https://doi.org/10.3390/ijms17071144openalex-extracted
Signaling Pathways in Melanogenesis
inferredcites →https://doi.org/10.3390/ijms232012214openalex-extracted
Cell Junction and Vesicle Trafficking-Mediated Melanosome/Melanin Transfer Are Involved in the Dynamic Transformation of Goldfish Carassius auratus Skin Color
inferredcites →https://doi.org/10.48550/arxiv.1401.1129openalex-extracted
Fast and accurate alignment of long bisulfite-seq reads
inferredcites →https://doi.org/10.7717/peerj.4147openalex-extracted
Epigenetic considerations in aquaculture
inferredcites →https://doi.org/10.5281/zenodo.5127898openalex-snapshot
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