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Phylogenomics of Paragymnopteris S.L. (Cheilanthoideae, Pteridaceae) with the Segeration of Sericopteris Gen. Nov

https://doi.org/10.2139/ssrn.4884258
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Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
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Infraspecific diversification of the star cloak fern (Notholaena standleyi) in the deserts of the United States and Mexico
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A drought‐driven model for the evolution of obligate apomixis in ferns: evidence from pellaeids (Pteridaceae)
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IOPB CHROMOSOME NUMBER REPORTS: X
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PARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR-JOINING
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Pteridaceae
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Further progress towards the delimitation of Cheilanthes (Cheilanthoideae, Pteridaceae), with emphasis on South American species
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Reproductive expression of cheilanthoid ferns (Pteridaceae) from South America
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Low-copy nuclear sequence data confirm complex patterns of farina evolution in notholaenid ferns (Pteridaceae)
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Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture
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fastp: an ultra-fast all-in-one FASTQ preprocessor
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
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UFBoot2: Improving the Ultrafast Bootstrap Approximation
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Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
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The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Accelerated Rate of Molecular Evolution for Vittarioid Ferns is Strong and Not Driven by Selection
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Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms
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HyDe: A Python Package for Genome-Scale Hybridization Detection
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Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
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PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
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Simultaneous diversification of Polypodiales and angiosperms in the Mesozoic
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Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae
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TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
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phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/jipb.13246openalex-extracted
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
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Genetic and genomic aspects of hybridization in ferns
inferredcites →https://doi.org/10.1111/jse.12229openalex-extracted
A community‐derived classification for extant lycophytes and ferns
inferredcites →https://doi.org/10.1111/jse.12723openalex-extracted
Phylogenetic position of South American Cheilanthes (Cheilanthoideae, Pteridaceae): Advances in the generic circumscription and segregation of the new genus Mineirella
inferredcites →https://doi.org/10.1111/nph.14111openalex-extracted
Next‐generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single‐molecule sequencing
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Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.11646/phytotaxa.220.1.2openalex-extracted
The phylogenetic affinities of Pellaea connectens, a rare endemic Chinese fern
inferredcites →https://doi.org/10.11646/phytotaxa.221.2.1openalex-extracted
Identifying the generic limits of the Cheilanthoid genus Doryopteris
inferredcites →https://doi.org/10.11646/phytotaxa.514.3.4openalex-extracted
Cheilanthes qiaojiaensis (Cheilanthoideae, Pteridaceae), a new fern species from Yunnan, China
inferredcites →https://doi.org/10.1186/1471-2105-9-322openalex-extracted
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
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A maximum pseudo-likelihood approach for phylogenetic networks
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Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-extracted
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-extracted
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
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The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
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Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution
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Occurrence Download
inferredcites →https://doi.org/10.1554/0014-3820(2003)057[0717:tfpsic]2.0.co;2openalex-extracted
TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
inferredcites →https://doi.org/10.1600/036364411x583547openalex-extracted
Species Relationships and Farina Evolution in the Cheilanthoid Fern Genus Argyrochosma (Pteridaceae)
inferredcites →https://doi.org/10.1600/036364419x15620113920536openalex-extracted
Baja: A New Monospecific Genus Segregated from Cheilanthes s. l. (Pteridaceae)
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A Redefinition of the Genus Hemionitis
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Some New Names and Combinations in Pteridaceae
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The Families and Genera of Vascular Plants
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Phylotranscriptomics Illuminates the Placement of Whole Genome Duplications and Gene Retention in Ferns
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PARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR‐JOINING
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