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Ecology of Prophage-Like Elements in Bacillus Subtilis at Global and Local Geographical Scale

https://doi.org/10.2139/ssrn.4890103
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Spatial Patterns of Gene Expression in Bacterial Genomes
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Environment Shapes the Intra-species Diversity of Bacillus subtilis Isolates
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Prophages encode phage-defense systems with cognate self-immunity
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PICI thieves: Molecular piracy and cooperation
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Phages carry interbacterial weapons encoded by biosynthetic gene clusters
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A new health threat in Europe: Shiga toxin–producing Escherichia coli O104:H4 infections
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Prophages provide a rich source of antiphage defense systems
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Unique relationships between phages and endospore-forming hosts
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Aerobiology and the global transport of desert dust
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The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
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Within-host competition determines reproductive success of temperate bacteriophages
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High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection
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Communication between viruses guides lysis–lysogeny decisions
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Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility
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Bacillus subtilis biofilm extends Caenorhabditis elegans longevity through downregulation of the insulin-like signalling pathway
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De novo evolved interference competition promotes the spread of biofilm defectors
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Lysogeny is prevalent and widely distributed in the murine gut microbiota
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Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms
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Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis
inferredcites →https://doi.org/10.1038/s41564-021-01008-5openalex-extracted
Dormant phages communicate via arbitrium to control exit from lysogeny
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Isolation, engineering and ecology of temperate phages from the human gut
inferredcites →https://doi.org/10.1038/s41587-019-0100-8openalex-extracted
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
inferredcites →https://doi.org/10.1038/s41598-018-28326-9openalex-extracted
Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities
inferredcites →https://doi.org/10.1073/pnas.0505835102openalex-extracted
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
inferredcites →https://doi.org/10.1073/pnas.1405336111openalex-extracted
Pervasive domestication of defective prophages by bacteria
inferredcites →https://doi.org/10.1073/pnas.1512671112openalex-extracted
Kin discrimination between sympatric Bacillus subtilis isolates
inferredcites →https://doi.org/10.1089/phage.2021.0007openalex-extracted
INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes
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Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-extracted
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/molbev/msg219openalex-extracted
Genome Engineering Reveals Large Dispensable Regions in Bacillus subtilis
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-extracted
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/molbev/mss279openalex-extracted
The Adaptation of Temperate Bacteriophages to Their Host Genomes
inferredcites →https://doi.org/10.1093/nar/gkr485openalex-extracted
PHAST: A Fast Phage Search Tool
inferredcites →https://doi.org/10.1093/nar/gkw387openalex-extracted
PHASTER: a better, faster version of the PHAST phage search tool
inferredcites →https://doi.org/10.1094/mpmi-08-20-0225-cropenalex-extracted
Molecular Aspects of Plant Growth Promotion and Protection byBacillus subtilis
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Completing bacterial genome assemblies with multiplex MinION sequencing
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Laboratory strains of Escherichia coli K-12: things are seldom what they seem
inferredcites →https://doi.org/10.1099/mic.0.000371openalex-extracted
Specific Bacillus subtilis 168 variants form biofilms on nutrient-rich medium
inferredcites →https://doi.org/10.1101/gad.4.4.525openalex-extracted
The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene.
inferredcites →https://doi.org/10.1111/j.1365-2672.2005.02736.xopenalex-extracted
Spores of Bacillus subtilis: their resistance to and killing by radiation, heat and chemicals
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02717.xopenalex-extracted
The quorum sensing diversity within and between ecotypes of Bacillus subtilis
inferredcites →https://doi.org/10.1128/aem.02473-14openalex-extracted
Identification of ypqP as a New Bacillus subtilis Biofilm Determinant That Mediates the Protection of Staphylococcus aureus against Antimicrobial Agents in Mixed-Species Communities
inferredcites →https://doi.org/10.1128/aem.02955-20openalex-extracted
Bacillaene Mediates the Inhibitory Effect of Bacillus subtilis on Campylobacter jejuni Biofilms
inferredcites →https://doi.org/10.1128/cmr.00039-06openalex-extracted
Atmospheric Movement of Microorganisms in Clouds of Desert Dust and Implications for Human Health
inferredcites →https://doi.org/10.1128/jb.00290-20openalex-extracted
The Large pBS32/pLS32 Plasmid of Ancestral Bacillus subtilis
inferredcites →https://doi.org/10.1128/jb.00625-10openalex-extracted
Repression of sigK Intervening ( skin ) Element Gene Expression by the CI-Like Protein SknR and Effect of SknR Depletion on Growth of Bacillus subtilis Cells
inferredcites →https://doi.org/10.1128/jb.00696-13openalex-extracted
Plasmid-Encoded ComI Inhibits Competence in the Ancestral 3610 Strain of Bacillus subtilis
inferredcites →https://doi.org/10.1128/jb.01290-08openalex-extracted
Social Interactions and Distribution of Bacillus subtilis Pherotypes at Microscale
inferredcites →https://doi.org/10.1128/jb.01515-09openalex-extracted
Genome Diversity of Pseudomonas aeruginosa PAO1 Laboratory Strains
inferredcites →https://doi.org/10.1128/jb.01542-10openalex-extracted
Tracing the Domestication of a Biofilm-Forming Bacterium
inferredcites →https://doi.org/10.1128/jb.172.5.2667-2674.1990openalex-extracted
Characterization of PBSX, a defective prophage of Bacillus subtilis
inferredcites →https://doi.org/10.1128/jb.178.11.3399-3401.1996openalex-extracted
Phenotypic differentiation of "smart" versus "naive" bacteriophages of Bacillus subtilis
inferredcites →https://doi.org/10.1128/jvi.54.3.773-780.1985openalex-extracted
DNA packaging by the Bacillus subtilis defective bacteriophage PBSX
inferredcites →https://doi.org/10.1128/msystems.00326-22openalex-extracted
Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host Range
inferredcites →https://doi.org/10.1128/spectrum.01836-22openalex-extracted
Nutrient Availability and Biofilm Polysaccharide Shape the Bacillaene-Dependent Antagonism of Bacillus subtilis against Salmonella Typhimurium
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-extracted
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pgen.1010065openalex-extracted
Interactions between mobile genetic elements: An anti-phage gene in an integrative and conjugative element protects host cells from predation by a temperate bacteriophage
inferredcites →https://doi.org/10.3382/ps/pey265openalex-extracted
Bacillus subtilis in broiler diets with different levels of energy and protein
inferredcites →https://doi.org/10.3389/fimmu.2017.00354openalex-extracted
Bacillus subtilis Improves Immunity and Disease Resistance in Rabbits
inferredcites →https://doi.org/10.3390/microorganisms10020289openalex-extracted
Bacillus subtilis PS-216 Antagonistic Activities against Campylobacter jejuni NCTC 11168 Are Modulated by Temperature, Oxygen, and Growth Medium
inferredcites →https://doi.org/10.3390/pathogens10040404openalex-extracted
Bacteriophages of Shiga Toxin-Producing Escherichia coli and Their Contribution to Pathogenicity
inferredcites →https://doi.org/10.3390/v11110983openalex-extracted
Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum
inferredcites →https://doi.org/10.3390/v14030483openalex-extracted
Prevalence, Diversity and UV-Light Inducibility Potential of Prophages in Bacillus subtilis and Their Possible Roles in Host Properties
inferredcites →https://doi.org/10.4049/jimmunol.1303369openalex-extracted
Protection from Intestinal Inflammation by Bacterial Exopolysaccharides
inferredcites →https://doi.org/10.1101/2020.12.13.422588openalex-snapshot
An integrative and conjugative element encodes an abortive infection system to protect host cells from predation by a bacteriophage
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