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Metagenomic Analysis of Antibiotic Resistance Across the Wastewater Cycle

https://doi.org/10.2139/ssrn.4895328
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9781119192428.ch15openalex-snapshot
Antibiotic Resistance and Wastewater Treatment Process
inferredcites →https://doi.org/10.1002/9781119192428.ch9openalex-snapshot
Bacterial Diversity and Antibiotic Resistance Genes in Wastewater Treatment Plant Influents and Effluents
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Community Diversity Measures and Calculations
inferredcites →https://doi.org/10.1007/s10311-018-0785-9openalex-snapshot
Advantages and disadvantages of techniques used for wastewater treatment
inferredcites →https://doi.org/10.1007/s10653-020-00759-0openalex-snapshot
Impact factors of the accumulation, migration and spread of antibiotic resistance in the environment
inferredcites →https://doi.org/10.1007/s11274-022-03334-0openalex-snapshot
Occurrence of antibiotics and bacterial resistance genes in wastewater: resistance mechanisms and antimicrobial resistance control approaches
inferredcites →https://doi.org/10.1007/s11756-021-00697-xopenalex-snapshot
Antibiotic resistance crisis: challenges and imperatives
inferredcites →https://doi.org/10.1016/b978-0-12-819722-6.00006-7openalex-snapshot
Multidrug-resistant genes and pathogenic bacteria in hospital wastewater
inferredcites →https://doi.org/10.1016/j.chemosphere.2015.10.044openalex-snapshot
Class 1 integrase, sulfonamide and tetracycline resistance genes in wastewater treatment plant and surface water
inferredcites →https://doi.org/10.1016/j.chemosphere.2022.136977openalex-snapshot
Antibiotics degradation by advanced oxidation process (AOPs): Recent advances in ecotoxicity and antibiotic-resistance genes induction of degradation products
inferredcites →https://doi.org/10.1016/j.crm.2020.100262openalex-snapshot
Impacts and implications of climate change on wastewater systems: A New Zealand perspective
inferredcites →https://doi.org/10.1016/j.envint.2019.05.036openalex-snapshot
Metagenomic and metatranscriptomic analyses reveal activity and hosts of antibiotic resistance genes in activated sludge
inferredcites →https://doi.org/10.1016/j.envint.2019.105270openalex-snapshot
Exploration of the antibiotic resistome in a wastewater treatment plant by a nine-year longitudinal metagenomic study
inferredcites →https://doi.org/10.1016/j.envpol.2017.12.001openalex-snapshot
Metagenomic exploration reveals a marked change in the river resistome and mobilome after treated wastewater discharges
inferredcites →https://doi.org/10.1016/j.envpol.2021.116736openalex-snapshot
Metagenomic analysis of urban wastewater resistome and mobilome: A support for antimicrobial resistance surveillance in an endemic country
inferredcites →https://doi.org/10.1016/j.envpol.2021.117673openalex-snapshot
Abundance and environmental host range of the SXT/R391 ICEs in aquatic environmental communities
inferredcites →https://doi.org/10.1016/j.envres.2021.112426openalex-snapshot
Effects of influent immigration and environmental factors on bacterial assembly of activated sludge microbial communities
inferredcites →https://doi.org/10.1016/j.jhazmat.2014.02.016openalex-snapshot
Prevalence of sulfonamide-resistant bacteria, resistance genes and integron-associated horizontal gene transfer in natural water bodies and soils adjacent to a swine feedlot in northern Taiwan
inferredcites →https://doi.org/10.1016/j.jhazmat.2019.121221openalex-snapshot
Small-scale wastewater treatment plants as a source of the dissemination of antibiotic resistance genes in the aquatic environment
inferredcites →https://doi.org/10.1016/j.jhazmat.2021.128155openalex-snapshot
Prevalence of enteric opportunistic pathogens and extended-spectrum cephalosporin- and carbapenem-resistant coliforms and genes in wastewater from municipal wastewater treatment plants in Croatia
inferredcites →https://doi.org/10.1016/j.scitotenv.2015.05.046openalex-snapshot
Fate and proliferation of typical antibiotic resistance genes in five full-scale pharmaceutical wastewater treatment plants
inferredcites →https://doi.org/10.1016/j.scitotenv.2017.10.312openalex-snapshot
Antibiotics and common antibacterial biocides stimulate horizontal transfer of resistance at low concentrations
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.11.265openalex-snapshot
Consolidated vs new advanced treatment methods for the removal of contaminants of emerging concern from urban wastewater
inferredcites →https://doi.org/10.1016/j.scitotenv.2019.05.315openalex-snapshot
Antibiotic microbial resistance (AMR) removal efficiencies by conventional and advanced wastewater treatment processes: A review
inferredcites →https://doi.org/10.1016/j.scitotenv.2020.141990openalex-snapshot
Treatment technologies for emerging contaminants in wastewater treatment plants: A review
inferredcites →https://doi.org/10.1016/j.scitotenv.2021.146964openalex-snapshot
Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges
inferredcites →https://doi.org/10.1016/j.sjbs.2014.08.002openalex-snapshot
Antibiotic resistance and extended spectrum beta-lactamases: Types, epidemiology and treatment
inferredcites →https://doi.org/10.1016/j.tim.2013.11.001openalex-snapshot
The role of aquatic ecosystems as reservoirs of antibiotic resistance
inferredcites →https://doi.org/10.1016/j.watres.2015.01.014openalex-snapshot
Influence of influent wastewater communities on temporal variation of activated sludge communities
inferredcites →https://doi.org/10.1016/j.watres.2019.06.075openalex-snapshot
Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters
inferredcites →https://doi.org/10.1016/j.watres.2019.115277openalex-snapshot
Metagenomic analysis of β-lactamase and carbapenemase genes in the wastewater resistome
inferredcites →https://doi.org/10.1016/j.watres.2020.116592openalex-snapshot
Free-floating extracellular DNA: Systematic profiling of mobile genetic elements and antibiotic resistance from wastewater
inferredcites →https://doi.org/10.1016/j.watres.2021.117882openalex-snapshot
Higher abundance of core antimicrobial resistant genes in effluent from wastewater treatment plants
inferredcites →https://doi.org/10.1016/j.watres.2022.118571openalex-snapshot
Metagenomic profiling and transfer dynamics of antibiotic resistance determinants in a full-scale granular sludge wastewater treatment plant
inferredcites →https://doi.org/10.1016/s0140-6736(15)00473-0openalex-snapshot
Understanding the mechanisms and drivers of antimicrobial resistance
inferredcites →https://doi.org/10.1038/ismej.2015.117openalex-snapshot
The activated sludge ecosystem contains a core community of abundant organisms
inferredcites →https://doi.org/10.1038/s41467-022-34312-7openalex-snapshot
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
inferredcites →https://doi.org/10.1038/s41598-019-50952-0openalex-snapshot
The capacity of wastewater treatment plants drives bacterial community structure and its assembly
inferredcites →https://doi.org/10.1038/s43705-022-00098-4openalex-snapshot
Microbial communities across activated sludge plants show recurring species-level seasonal patterns
inferredcites →https://doi.org/10.1073/pnas.0806164106openalex-snapshot
Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas
inferredcites →https://doi.org/10.1093/bioinformatics/btp105openalex-snapshot
INTEGRALL: a database and search engine for integrons, integrases and gene cassettes
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/femsec/fiy101openalex-snapshot
Water and sanitation: an essential battlefront in the war on antimicrobial resistance
inferredcites →https://doi.org/10.1093/jac/dkv324openalex-snapshot
Characterization of Acinetobacter johnsonii isolate XBB1 carrying nine plasmids and encoding NDM-1, OXA-58 and PER-1 by genome sequencing
inferredcites →https://doi.org/10.1093/jac/dkx488openalex-snapshot
Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae
inferredcites →https://doi.org/10.1093/nar/gkr846openalex-snapshot
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
inferredcites →https://doi.org/10.1099/mic.0.28941-0openalex-snapshot
Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype
inferredcites →https://doi.org/10.1101/2022.09.16.508255openalex-snapshot
Catch me if you can: Capturing extracellular DNA transformation in mixed cultures via Hi-C sequencing
inferredcites →https://doi.org/10.1101/gr.213959.116openalex-snapshot
metaSPAdes: a new versatile metagenomic assembler
inferredcites →https://doi.org/10.1111/1462-2920.14986openalex-snapshot
Associations between sensitivity to antibiotics, disinfectants and heavy metals in natural, clinical and laboratory isolates of Escherichia coli
inferredcites →https://doi.org/10.1128/aac.00019-18openalex-snapshot
PGI2 Is a Novel SGI1-Relative Multidrug-Resistant Genomic Island Characterized in Proteus mirabilis
inferredcites →https://doi.org/10.1128/aac.00419-13openalex-snapshot
The Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1128/aem.02252-13openalex-snapshot
Diverse Broad-Host-Range Plasmids from Freshwater Carry Few Accessory Genes
inferredcites →https://doi.org/10.1128/aem.02766-17openalex-snapshot
Impact of Wastewater Treatment on the Prevalence of Integrons and the Genetic Diversity of Integron Gene Cassettes
inferredcites →https://doi.org/10.1128/cmr.00181-19openalex-snapshot
Antimicrobial Resistance in ESKAPE Pathogens
inferredcites →https://doi.org/10.1128/mmbr.00056-13openalex-snapshot
Integrons: Past, Present, and Future
inferredcites →https://doi.org/10.1155/2018/8278970openalex-snapshot
Analysis of Bacterial Community Structure of Activated Sludge from Wastewater Treatment Plants in Winter
inferredcites →https://doi.org/10.1186/s13059-019-1891-0openalex-snapshot
Improved metagenomic analysis with Kraken 2
inferredcites →https://doi.org/10.1186/s40168-019-0663-0openalex-snapshot
Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
inferredcites →https://doi.org/10.1201/9780367813925-11openalex-snapshot
The Tn4371 ICE Family of Bacterial Mobile Genetic Elements
inferredcites →https://doi.org/10.1371/journal.pcbi.1007781openalex-snapshot
PlasClass improves plasmid sequence classification
inferredcites →https://doi.org/10.2147/idr.s370669openalex-snapshot
Metagenomic Analysis of Urban Wastewater Treatment Plant Effluents in Tokyo
inferredcites →https://doi.org/10.2166/wst.2001.0077openalex-snapshot
Possible impact of treated wastewater discharge on incidence of antibiotic resistant bacteria in river water
inferredcites →https://doi.org/10.2217/fmb-2019-0235openalex-snapshot
RND Efflux Pumps in Gram-Negative Bacteria; Regulation, Structure and Role in Antibiotic Resistance
inferredcites →https://doi.org/10.24875/bmhim.21000041openalex-snapshot
Emerging species in pediatrics: a case of Acinetobacter johnsonii meningitis
inferredcites →https://doi.org/10.3389/fcimb.2021.532989openalex-snapshot
Antimicrobial Susceptibility and Genomic Analysis of Aliarcobacter cibarius and Aliarcobacter thereius, Two Rarely Detected Aliarcobacter Species
inferredcites →https://doi.org/10.3389/fmicb.2014.00558openalex-snapshot
Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant
inferredcites →https://doi.org/10.3389/fmicb.2016.00090openalex-snapshot
Microbial Community Structure of Activated Sludge in Treatment Plants with Different Wastewater Compositions
inferredcites →https://doi.org/10.3389/fmicb.2016.00173openalex-snapshot
Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer
inferredcites →https://doi.org/10.3389/fmicb.2019.00633openalex-snapshot
The Role of Plasmids in the Multiple Antibiotic Resistance Transfer in ESBLs-Producing Escherichia coli Isolated From Wastewater Treatment Plants
inferredcites →https://doi.org/10.3389/fmicb.2020.00761openalex-snapshot
Targeting Plasmids to Limit Acquisition and Transmission of Antimicrobial Resistance
inferredcites →https://doi.org/10.3389/fmicb.2023.1193907openalex-snapshot
Wastewater treatment plants, an “escape gate” for ESCAPE pathogens
inferredcites →https://doi.org/10.3390/antibiotics2010163openalex-snapshot
Resistance-Nodulation-Division Multidrug Efflux Pumps in Gram-Negative Bacteria: Role in Virulence
inferredcites →https://doi.org/10.3390/app12063100openalex-snapshot
Bacterial Hosts and Genetic Characteristics of Antibiotic Resistance Genes in Wastewater Treatment Plants of Xinjiang (China) Revealed by Metagenomics
inferredcites →https://doi.org/10.3390/pathogens10101310openalex-snapshot
Bacterial Antibiotic Resistance: The Most Critical Pathogens
inferredcites →https://doi.org/10.4103/0974-2727.176234openalex-snapshot
Aeromonas spp.: An Emerging Nosocomial Pathogen
inferredcites →https://doi.org/10.48550/arxiv.1303.3997openalex-snapshot
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
inferredcites →https://doi.org/10.5194/essd-14-559-2022openalex-snapshot
Distribution and characteristics of wastewater treatment plants within the global river network
inferredcites →https://doi.org/10.7717/peerj-cs.104openalex-snapshot
Bracken: estimating species abundance in metagenomics data
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