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A Symbiogenic Origin for Prokaryotes

https://doi.org/10.2139/ssrn.4969383
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Endosymbiont-Mediated Adaptive Responses to Stress in Holobionts
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“Hypothesis for the Modern RNA World”: A pervasive Non-coding RNA-Based Genetic Regulation is a Prerequisite for the Emergence of Multicellular Complexity
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Specialized transduction of tetracycline resistance by phage P22 in Salmonella typhimurium
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The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells
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Characterisation of the fig-fig wasp holobiont
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Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner
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Endosymbiosis as a source of immune innovation
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Transposable elements
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Symbiosis in eukaryotic evolution
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Symbiogenesis: Beyond the endosymbiosis theory?
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Persistent virus and addiction modules: an engine of symbiosis
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Macroalgal deep genomics illuminate multiple paths to aquatic, photosynthetic multicellularity
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Exploring the prokaryotic virosphere
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Viruses as living processes
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Horizontal gene transfer between bacteria and animals
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Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
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Genetic and life-history traits associated with the distribution of prophages in bacteria
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Lysogeny in nature: mechanisms, impact and ecology of temperate phages
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A high-resolution map of human evolutionary constraint using 29 mammals
inferredcites →https://doi.org/10.1038/ncomms1146openalex-snapshot
Cryptic prophages help bacteria cope with adverse environments
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Variability and host density independence in inductions-based estimates of environmental lysogeny
inferredcites →https://doi.org/10.1038/nrmicro3527openalex-snapshot
A new perspective on lysogeny: prophages as active regulatory switches of bacteria
inferredcites →https://doi.org/10.1038/s41396-018-0061-9openalex-snapshot
Lysogeny is prevalent and widely distributed in the murine gut microbiota
inferredcites →https://doi.org/10.1038/s41396-023-01547-1openalex-snapshot
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
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The LUCA and its complex virome
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Small protein modules dictate prophage fates during polylysogeny
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Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella
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Efficient sporulation in Clostridium difficile requires disruption of the σK gene
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Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain
inferredcites →https://doi.org/10.1093/bioinformatics/bts014openalex-snapshot
PHACTS, a computational approach to classifying the lifestyle of phages
inferredcites →https://doi.org/10.1093/femsle/fnu022openalex-snapshot
Bacterial genome remodeling through bacteriophage recombination
inferredcites →https://doi.org/10.1093/femsle/fnw015openalex-snapshot
The role of temperate bacteriophages in bacterial infection
inferredcites →https://doi.org/10.1093/molbev/mss279openalex-snapshot
The Adaptation of Temperate Bacteriophages to Their Host Genomes
inferredcites →https://doi.org/10.1093/nar/gkq096openalex-snapshot
Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs
inferredcites →https://doi.org/10.1101/cshperspect.a034801openalex-snapshot
Protocells and RNA Self-Replication
inferredcites →https://doi.org/10.1101/gad.4.4.525openalex-snapshot
The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene.
inferredcites →https://doi.org/10.1101/gr.122705.111openalex-snapshot
The human gut virome: Inter-individual variation and dynamic response to diet
inferredcites →https://doi.org/10.1105/tpc.109.065805openalex-snapshot
Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi
inferredcites →https://doi.org/10.1111/1462-2920.15640openalex-snapshot
The landscape of lysogeny across microbial community density, diversity and energetics
inferredcites →https://doi.org/10.1111/1758-2229.12716openalex-snapshot
Entities inside one another ‐ a matryoshka doll in biology?
inferredcites →https://doi.org/10.1111/eva.12243openalex-snapshot
Polylysogeny magnifies competitiveness of a bacterial pathogen in vivo
inferredcites →https://doi.org/10.1111/j.1550-7408.1999.tb04614.xopenalex-snapshot
Principles of Protein and Lipid Targeting in Secondary Symbiogenesis: Euglenoid, Dinoflagellate, and Sporozoan Plastid Origins and the Eukaryote Family Tree 1 , 2
inferredcites →https://doi.org/10.1111/j.1574-6976.2006.00015.xopenalex-snapshot
Bacteriophage replication modules
inferredcites →https://doi.org/10.1128/jb.00189-18openalex-snapshot
Phage Morons Play an Important Role in Pseudomonas aeruginosa Phenotypes
inferredcites →https://doi.org/10.1128/jb.01272-12openalex-snapshot
Novel High-Molecular-Weight, R-Type Bacteriocins of Clostridium difficile
inferredcites →https://doi.org/10.1128/jb.02230-14openalex-snapshot
Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions
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Isolation of a Specialized Lambda Transducing Bacteriophage Carrying the Beta Subunit Gene for Escherichia coli Ribonucleic Acid Polymerase
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Bacillus subtilis bacteriophage SPbeta: localization of the prophage attachment site, and specialized transduction
inferredcites →https://doi.org/10.1128/jb.165.2.448-452.1986openalex-snapshot
Specialized transduction of Pseudomonas aeruginosa PAO by bacteriophage D3
inferredcites →https://doi.org/10.1128/jb.186.3.595-600.2004openalex-snapshot
Lysogeny at Mid-Twentieth Century: P1, P2, and Other Experimental Systems
inferredcites →https://doi.org/10.1146/annurev.genet.30.1.297openalex-snapshot
MOLECULAR GENETICS OF SPORULATION IN BACILLUS SUBTILIS
inferredcites →https://doi.org/10.1186/s12915-020-00800-9openalex-snapshot
The replication machinery of LUCA: common origin of DNA replication and transcription
inferredcites →https://doi.org/10.1371/journal.ppat.1007888openalex-snapshot
Bacteriophages benefit from generalized transduction
inferredcites →https://doi.org/10.1534/genetics.108.100024openalex-snapshot
The Functional Transfer of Genes From the Mitochondria to the Nucleus: The Effects of Selection, Mutation, Population Size and Rate of Self-Fertilization
inferredcites →https://doi.org/10.3390/biology6040042openalex-snapshot
Living Organisms Author Their Read-Write Genomes in Evolution
inferredcites →https://doi.org/10.4161/bact.21363openalex-snapshot
Inducible Clostridium perfringens bacteriophages ΦS9 and ΦS63
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