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Integrative Analysis of Transcriptome, Proteome, and Phosphoproteome Reveals the Complexity of Early Nitrogen Responses in Poplar (Populus × Xiaohei T. S. Hwang & Liang in Bull. Bot. Res.) Roots

https://doi.org/10.2139/ssrn.5034347
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/pmic.201400004openalex-snapshot
Analysis of phosphoproteome in rice pistil
inferredcites →https://doi.org/10.1002/pmic.201400410openalex-snapshot
Recent advances and challenges in plant phosphoproteomics
inferredcites →https://doi.org/10.1007/s00425-012-1807-7openalex-snapshot
Net fluxes of ammonium and nitrate in association with H+ fluxes in fine roots of Populus popularis
inferredcites →https://doi.org/10.1007/s12374-014-0902-7openalex-snapshot
Master regulators in plant glucose signaling networks
inferredcites →https://doi.org/10.1016/j.ab.2006.12.033openalex-snapshot
High-throughput colorimetric method for the parallel assay of glyoxylic acid and ammonium in a single extract
inferredcites →https://doi.org/10.1016/j.pbi.2009.12.003openalex-snapshot
Nitrate signaling: adaptation to fluctuating environments
inferredcites →https://doi.org/10.1016/j.pbi.2011.06.008openalex-snapshot
Quantitative plant phosphoproteomics
inferredcites →https://doi.org/10.1016/j.pbi.2012.03.009openalex-snapshot
Integration of local and systemic signaling pathways for plant N responses
inferredcites →https://doi.org/10.1016/j.tplants.2015.11.001openalex-snapshot
Molecular Insights into the Enigmatic Metabolic Regulator, SnRK1
inferredcites →https://doi.org/10.1021/acs.jproteome.9b00600openalex-snapshot
Phosphoproteomic and Metabolomic Analyses Reveal Sexually Differential Regulatory Mechanisms in Poplar to Nitrogen Deficiency
inferredcites →https://doi.org/10.1038/nmeth.1322openalex-snapshot
Universal sample preparation method for proteome analysis
inferredcites →https://doi.org/10.1038/nmeth.2212openalex-snapshot
A travel guide to Cytoscape plugins
inferredcites →https://doi.org/10.1038/nprot.2006.232openalex-snapshot
Quantification of starch in plant tissues
inferredcites →https://doi.org/10.1038/srep31697openalex-snapshot
Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation
inferredcites →https://doi.org/10.1042/bj0570508openalex-snapshot
The estimation of carbohydrates in plant extracts by anthrone
inferredcites →https://doi.org/10.1046/j.1365-3040.2003.01012.xopenalex-snapshot
Gene expression associated with N‐induced shifts in resource allocation in poplar
inferredcites →https://doi.org/10.1071/fp14171openalex-snapshot
Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source
inferredcites →https://doi.org/10.1074/mcp.m113.031591openalex-snapshot
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/emboj/cdg118openalex-snapshot
Switching between the two action modes of the dual‐affinity nitrate transporter CHL1 by phosphorylation
inferredcites →https://doi.org/10.1093/jxb/erab246openalex-snapshot
Nitrate-responsive NIN-like protein transcription factors perform unique and redundant roles in Arabidopsis
inferredcites →https://doi.org/10.1093/jxb/erae124openalex-snapshot
Overexpressing GLUTAMINE SYNTHETASE 1;2 maintains carbon and nitrogen balance under high-ammonium conditions and results in increased tolerance to ammonium toxicity in hybrid poplar
inferredcites →https://doi.org/10.1093/jxb/ers271openalex-snapshot
N-fertilization has different effects on the growth, carbon and nitrogen physiology, and wood properties of slow- and fast-growing Populus species
inferredcites →https://doi.org/10.1093/jxb/ert234openalex-snapshot
Nitrogen metabolism of two contrasting poplar species during acclimation to limiting nitrogen availability
inferredcites →https://doi.org/10.1093/jxb/eru245openalex-snapshot
The Primary Nitrate Response: a multifaceted signalling pathway
inferredcites →https://doi.org/10.1093/jxb/erw416openalex-snapshot
The plant energy sensor: evolutionary conservation and divergence of SnRK1 structure, regulation, and function
inferredcites →https://doi.org/10.1093/nar/gkn923openalex-snapshot
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
inferredcites →https://doi.org/10.1093/pcp/pcy038openalex-snapshot
MpAMT1;2 from Marchantia polymorpha is a High-Affinity, Plasma Membrane Ammonium Transporter
inferredcites →https://doi.org/10.1093/plcell/koad025openalex-snapshot
The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply
inferredcites →https://doi.org/10.1093/plphys/kiae277openalex-snapshot
Transcription factor ZmEREB97 regulates nitrate uptake in maize (Zea mays) roots
inferredcites →https://doi.org/10.1093/treephys/tpt088openalex-snapshot
Seasonal dynamics of mobile carbohydrate pools in phloem and xylem of two alpine timberline conifers
inferredcites →https://doi.org/10.1093/treephys/tpt121openalex-snapshot
Plant nitrogen status and co-occurrence of organic and inorganic nitrogen sources influence root uptake by Scots pine seedlings
inferredcites →https://doi.org/10.1093/treephys/tpv091openalex-snapshot
Global poplar root and leaf transcriptomes reveal links between growth and stress responses under nitrogen starvation and excess
inferredcites →https://doi.org/10.1104/pp.104.047019openalex-snapshot
Genome-Wide Reprogramming of Primary and Secondary Metabolism, Protein Synthesis, Cellular Growth Processes, and the Regulatory Infrastructure of Arabidopsis in Response to Nitrogen
inferredcites →https://doi.org/10.1104/pp.106.080358openalex-snapshot
Transcriptional Coordination of the Metabolic Network in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.111.179838openalex-snapshot
Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation
inferredcites →https://doi.org/10.1105/tpc.109.067041openalex-snapshot
Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.109.068593openalex-snapshot
Feedback Inhibition of Ammonium Uptake by a Phospho-Dependent Allosteric Mechanism in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.11.5.937openalex-snapshot
Three Functional Transporters for Constitutive, Diurnally Regulated, and Starvation-Induced Uptake of Ammonium into Arabidopsis Roots
inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02780.xopenalex-snapshot
Phosphorylation and 14‐3‐3 binding of Arabidopsis trehalose‐phosphate synthase 5 in response to 2‐deoxyglucose
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03385.xopenalex-snapshot
The sucrose regulated transcription factor bZIP11 affects amino acid metabolism by regulating the expression of ASPARAGINE SYNTHETASE1 and PROLINE DEHYDROGENASE2
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04458.xopenalex-snapshot
The plant ADH gene family
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04848.xopenalex-snapshot
Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen‐starved Arabidopsis seedlings
inferredcites →https://doi.org/10.1111/j.1438-8677.2009.00309.xopenalex-snapshot
Nitrogen nutrition of poplar trees
inferredcites →https://doi.org/10.1111/j.1469-8137.2008.02751.xopenalex-snapshot
Uptake of organic nitrogen by plants
inferredcites →https://doi.org/10.1111/jipb.13057openalex-snapshot
Abscisic acid signaling negatively regulates nitrate uptake via phosphorylation of NRT1.1 by SnRK2s in Arabidopsis
inferredcites →https://doi.org/10.1111/nph.12375openalex-snapshot
Nitrogen deprivation promotes P opulus root growth through global transcriptome reprogramming and activation of hierarchical genetic networks
inferredcites →https://doi.org/10.1111/tpj.12677openalex-snapshot
Light modulated activity of root alkaline/neutral invertase involves the interaction with 14‐3‐3 proteins
inferredcites →https://doi.org/10.1111/tpj.13272openalex-snapshot
Early nitrogen‐deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho‐) proteome levels between nitrate and ammonium nutrition
inferredcites →https://doi.org/10.1186/s12870-014-0391-3openalex-snapshot
Nitrogen-driven stem elongation in poplar is linked with wood modification and gene clusters for stress, photosynthesis and cell wall formation
inferredcites →https://doi.org/10.3389/fpls.2014.00022openalex-snapshot
Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments
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