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Sinking Particles as Repository of Antimicrobial Resistome Diversity in the Sansha Yongle Blue Hole
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Bergey's Manual of Systematics of Archaea and Bacteria
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Blue holes: Definition and genesis
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Anthropogenic pollution drives the bacterial resistome in a complex freshwater ecosystem
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Antibiotic resistance: A key microbial survival mechanism that threatens public health
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Suspended particles are hotspots of microbial remineralization in the ocean's twilight zone
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Metagenomic insights into the abundance and composition of resistance genes in aquatic environments: Influence of stratification and geography
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Antibiotic resistance genes correlate with metal resistances and accumulate in the deep water layers of the Black Sea
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The diversity of the antimicrobial resistome of lake Tanganyika increases with the water depth
inferredcites →https://doi.org/10.1016/j.ese.2024.100388openalex-snapshot
Health risk ranking of antibiotic resistance genes in the Yangtze River
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Presence and characterization of methicillin-resistant Staphylococcus aureus co-carrying the multidrug resistance genes cfr and lsa(E) in retail food in China
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Genomic and metagenomic analysis reveals shared resistance genes and mobile genetic elements in E. coli and Klebsiella spp. isolated from hospital patients and hospital wastewater at intra- and inter-genus level
inferredcites →https://doi.org/10.1016/j.jhazmat.2024.134885openalex-snapshot
Anthropogenic pollution may enhance natural transformation in water, favouring the spread of antibiotic resistance genes
inferredcites →https://doi.org/10.1016/j.marpolbul.2024.116495openalex-snapshot
Parity in bacterial communities and resistomes: Microplastic and natural organic particles in the Tyrrhenian Sea
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International high-risk clones of Klebsiella pneumoniae KPC-2/CC258 and Escherichia coli CTX-M-15/CC10 in urban lake waters
inferredcites →https://doi.org/10.1016/j.scitotenv.2017.05.174openalex-snapshot
Contribution of bacteriophage and plasmid DNA to the mobilization of antibiotic resistance genes in a river receiving treated wastewater discharges
inferredcites →https://doi.org/10.1016/j.scitotenv.2023.163278openalex-snapshot
Occurrence and prevalence of antibiotic resistance genes and pathogens in an industrial park wastewater treatment plant
inferredcites →https://doi.org/10.1016/j.scitotenv.2023.168597openalex-snapshot
Bibliometric analysis of papers on antibiotic resistance genes in aquatic environments on a global scale from 2012 to 2022: Evidence from universality, development and harmfulness
inferredcites →https://doi.org/10.1016/j.tim.2006.02.006openalex-snapshot
Co-selection of antibiotic and metal resistance
inferredcites →https://doi.org/10.1016/j.tim.2023.07.010openalex-snapshot
Enterococci facilitate polymicrobial infections
inferredcites →https://doi.org/10.1016/j.watres.2019.04.031openalex-snapshot
Effluents of wastewater treatment plants promote the rapid stabilization of the antibiotic resistome in receiving freshwater bodies
inferredcites →https://doi.org/10.1038/ismej.2015.59openalex-snapshot
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
inferredcites →https://doi.org/10.1038/nbt.4163openalex-snapshot
KBase: The United States Department of Energy Systems Biology Knowledgebase
inferredcites →https://doi.org/10.1038/nmeth.3103openalex-snapshot
Binning metagenomic contigs by coverage and composition
inferredcites →https://doi.org/10.1038/s41467-024-50331-yopenalex-snapshot
Characterization of a Salmonella enterica serovar Typhimurium lineage with rough colony morphology and multidrug resistance
inferredcites →https://doi.org/10.1038/s41564-017-0012-7openalex-snapshot
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
inferredcites →https://doi.org/10.1038/s41564-018-0171-1openalex-snapshot
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
inferredcites →https://doi.org/10.1038/s41564-019-0503-9openalex-snapshot
Defining and combating antibiotic resistance from One Health and Global Health perspectives
inferredcites →https://doi.org/10.1038/s41564-023-01351-9openalex-snapshot
AMR, One Health and the environment
inferredcites →https://doi.org/10.1038/s41587-023-01953-yopenalex-snapshot
Identification of mobile genetic elements with geNomad
inferredcites →https://doi.org/10.1038/s41592-021-01101-xopenalex-snapshot
Sensitive protein alignments at tree-of-life scale using DIAMOND
inferredcites →https://doi.org/10.1038/s41598-018-35220-xopenalex-snapshot
Three-dimensional (3D) morphology of Sansha Yongle Blue Hole in the South China Sea revealed by underwater remotely operated vehicle
inferredcites →https://doi.org/10.1093/bioinformatics/btac672openalex-snapshot
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv033openalex-snapshot
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
inferredcites →https://doi.org/10.1093/femsec/fiaa002openalex-snapshot
The vertical distribution of tetA and intI1 in a deep lake is rather due to sedimentation than to resuspension
inferredcites →https://doi.org/10.1093/nar/gkac920openalex-snapshot
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1758-2229.13001openalex-snapshot
Unique bacterial communities and potential function along the vertical gradient in the deepest marine blue hole
inferredcites →https://doi.org/10.1111/1758-2229.13315openalex-snapshot
Genome‐resolved metagenomics revealed novel microbial taxa with ancient metabolism from macroscopic microbial mat structures inhabiting anoxic deep reefs of a Maldivian Blue Hole
inferredcites →https://doi.org/10.1111/j.1574-6941.2006.00185.xopenalex-snapshot
Effects of nutrient availability and Ochromonas sp. predation on size and composition of a simplified aquatic bacterial community
inferredcites →https://doi.org/10.11120/msor.2001.01010023openalex-snapshot
The R Project in Statistical Computing
inferredcites →https://doi.org/10.1128/aem.00991-22openalex-snapshot
mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/msphere.00100-23openalex-snapshot
Highly sensitive detection of antimicrobial resistance genes in hospital wastewater using the multiplex hybrid capture target enrichment
inferredcites →https://doi.org/10.1128/spectrum.01149-23openalex-snapshot
Microbial communities related to the sulfur cycle in the Sansha Yongle Blue Hole
inferredcites →https://doi.org/10.1186/s12859-018-2336-6openalex-snapshot
Rapid and precise alignment of raw reads against redundant databases with KMA
inferredcites →https://doi.org/10.1186/s40168-018-0401-zopenalex-snapshot
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
inferredcites →https://doi.org/10.3389/fmicb.2012.00399openalex-snapshot
Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture
inferredcites →https://doi.org/10.4319/lo.2008.53.4.1327openalex-snapshot
Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone
inferredcites →https://doi.org/10.4319/lo.2009.54.1.0182openalex-snapshot
Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic
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