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Archaeal and Bacterial Response to a Severe Pulse Disturbance: A Shotgun Metagenomic Study

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The genus Micromonospora as a model microorganism for bioactive natural product discovery
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Prokka: rapid prokaryotic genome annotation
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Trimmomatic: a flexible trimmer for Illumina sequence data
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HTSeq—a Python framework to work with high-throughput sequencing data
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes
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betapart: an R package for the study of beta diversity
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R: A Language and Environment for Statistical Computing
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