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Decoding Sequence-Structure-Function-Evolution of Basic Leucine Zippers of Aureochromes

https://doi.org/10.2139/ssrn.5339069
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Crystal Structures of Aureochrome1 LOV Suggest New Design Strategies for Optogenetics
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Optical Activation of TrkA Signaling
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Crystal structure of the heterodimeric bZIP transcription factor c-Fos–c-Jun bound to DNA
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Identification and functional characterization of two bamboo FD gene homologs having contrasting effects on shoot growth and flowering
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Domain tethering impacts dimerization and DNA-mediated allostery in the human transcription factor FoxP1
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AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles
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Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
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Eigenvector centrality for characterization of protein allosteric pathways
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Crystal Structure of the CCAAT Box/Enhancer-binding Protein β Activating Transcription Factor-4 Basic Leucine Zipper Heterodimer in the Absence of DNA
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The Structure of a CREB bZIP·Somatostatin CRE Complex Reveals the Basis for Selective Dimerization and Divalent Cation-enhanced DNA Binding
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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
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One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
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DNA binding and transactivation properties of Fos variants with homodimerization capacity
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Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs
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NPDock: a web server for protein–nucleic acid docking
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Allosteric communication between DNA-binding and light-responsive domains of diatom class I aureochromes
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UniProt: the universal protein knowledgebase
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SWISS-MODEL: homology modelling of protein structures and complexes
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New insights into protein–DNA binding specificity from hydrogen bond based comparative study
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Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design.
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AUREOCHROME1a-Mediated Induction of the Diatom-Specific Cyclin dsCYC2 Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)
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Transcription factor families inferred from genome sequences of photosynthetic stramenopiles
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Optogenetics in plants
inferredcites →https://doi.org/10.1126/science.8248779openalex-snapshot
A Switch Between Two-, Three-, and Four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants
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Classification of Human B-ZIP Proteins Based on Dimerization Properties
inferredcites →https://doi.org/10.1134/s0006297918060044openalex-snapshot
Aureochromes – Blue Light Receptors
inferredcites →https://doi.org/10.1159/000527593openalex-snapshot
Assessing Combinatorial Diversity of Aureochrome Basic Leucine Zippers through Genome-Wide Screening
inferredcites →https://doi.org/10.1186/s12862-016-0598-zopenalex-snapshot
The diversification of the basic leucine zipper family in eukaryotes correlates with the evolution of multicellularity
inferredcites →https://doi.org/10.1371/journal.pone.0002944openalex-snapshot
The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes
inferredcites →https://doi.org/10.1371/journal.pone.0074451openalex-snapshot
Aureochrome 1a Is Involved in the Photoacclimation of the Diatom Phaeodactylum tricornutum
inferredcites →https://doi.org/10.1371/journal.pone.0200850openalex-snapshot
Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame
inferredcites →https://doi.org/10.1371/journal.pone.0248688openalex-snapshot
Light-regulated voltage-gated potassium channels for acute interrogation of channel function in neurons and behavior
inferredcites →https://doi.org/10.3390/ijms19092800openalex-snapshot
Analysis of bZIP Transcription Factor Family and Their Expressions under Salt Stress in Chlamydomonas reinhardtii
inferredcites →https://doi.org/10.7554/elife.11860openalex-snapshot
Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence
inferredcites →https://doi.org/10.7554/elife.19272openalex-snapshot
Combinatorial bZIP dimers display complex DNA-binding specificity landscapes
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