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Integrative phylogenomics of Rhamnaceae: cytonuclear discordance driven by evolutionary networks and incomplete lineage sorting
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Western Tethys origin, tropical Asia and tropical America disjunction in Berchemia and reinstatement of Phyllogeiton (Rhamneae, Rhamnaceae)
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Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae)
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Phylogeny of the tribe Colletieae (Rhamnaceae) ? a sensitivity analysis of the plastid region trnL-trnF combined with morphology
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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
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Uncovering the first complete chloroplast genomics, comparative analysis, and phylogenetic relationships of the medicinal plants Rhamnus cathartica and Frangula alnus (Rhamnaceae)
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Ancient Rhamnaceae flowers impute an origin for flowering plants exceeding 250-million-years ago
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Backbone phylogeny of Salix based on genome skimming data
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Ancient hybridization fuels rapid cichlid fish adaptive radiations
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Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
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Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree
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Pseudogenization of the chloroplast threonine (trnT-GGU) gene in the sunflower family (Asteraceae)
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Speciation via introgressive hybridization in East African cichlids?
inferredcites →https://doi.org/10.1080/23802359.2020.1791749openalex-snapshot
The complete chloroplast genome of Berchemia lineata , an important medicinal plant from China
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The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China
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Fruit Morphology, Fossil History, and Biogeography of Paliurus (Rhamnaceae)
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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Phybase: an R package for species tree analysis
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The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
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Fast computation of minimum hybridization networks
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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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Bandage: interactive visualization of de novo genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
fastp: an ultra-fast all-in-one FASTQ preprocessor
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Phylogenetics and historical biogeography of the mock buckthorn genus (Sageretia, Rhamnaceae)
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Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees
inferredcites →https://doi.org/10.1093/nar/gkx391openalex-snapshot
GeSeq – versatile and accurate annotation of organelle genomes
inferredcites →https://doi.org/10.1093/sysbio/syy015openalex-snapshot
Inferring Phylogenetic Networks Using PhyloNet
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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1098/rspb.2001.1782openalex-snapshot
Evolution of the angiosperms: calibrating the family tree
inferredcites →https://doi.org/10.1098/rspb.2023.1926openalex-snapshot
Dispersal modes affect Rhamnaceae diversification rates in a differentiated manner
inferredcites →https://doi.org/10.1105/tpc.13.3.645openalex-snapshot
Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus
inferredcites →https://doi.org/10.1111/1365-2745.12538openalex-snapshot
Beyond climate: convergence in fast evolving sclerophylls in Cape and Australian Rhamnaceae predates the mediterranean climate
inferredcites →https://doi.org/10.1111/2041-210x.12628openalex-snapshot
ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/evo.12605openalex-snapshot
Do Mediterranean-type ecosystems have a common history?-Insights from the Buckthorn family (Rhamnaceae)
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/j.1438-8677.1996.tb00515.xopenalex-snapshot
Molecular marker incongruence in plant hybrid zones and phylogenetic trees
inferredcites →https://doi.org/10.1111/jbi.13448openalex-snapshot
The influence of the Gondwanan breakup on the biogeographic history of the ziziphoids (Rhamnaceae)
inferredcites →https://doi.org/10.1111/jse.12745openalex-snapshot
A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily
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Comparative analysis of 326 chloroplast genomes in Chinese jujube ( Ziziphus jujuba ): Structural variations, horizontal gene transfer events, and evolutionary patterns impacting its domestication from wild jujube
inferredcites →https://doi.org/10.1111/tpj.14292openalex-snapshot
Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae
inferredcites →https://doi.org/10.1186/1471-2105-9-322openalex-snapshot
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
inferredcites →https://doi.org/10.1186/s12864-022-08320-2openalex-snapshot
Uncovering the first complete plastome genomics, comparative analyses, and phylogenetic dispositions of endemic medicinal plant Ziziphus hajarensis (Rhamnaceae)
inferredcites →https://doi.org/10.1186/s12870-023-04074-5openalex-snapshot
Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae
inferredcites →https://doi.org/10.1186/s13059-016-1004-2openalex-snapshot
Chloroplast genomes: diversity, evolution, and applications in genetic engineering
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.12705/641.20openalex-snapshot
Generic phylogeny and character evolution in Urticeae (Urticaceae) inferred from nuclear and plastid DNA regions
inferredcites →https://doi.org/10.12705/651.4openalex-snapshot
Phylogenetic relationships within the cosmopolitan buckthorn family (Rhamnaceae) support the resurrection of Sarcomphalus and the description of Pseudoziziphus gen. nov.
inferredcites →https://doi.org/10.12705/661.4openalex-snapshot
Out‐of‐India dispersal of Paliurus (Rhamnaceae) indicated by combined molecular phylogenetic and fossil evidence
inferredcites →https://doi.org/10.12705/673.15openalex-snapshot
Disentangling the infrageneric classification of megadiverse taxa from Mata Atlantica: Phylogeny of Miconia section Chaenanthera (Melastomataceae: Miconieae)
inferredcites →https://doi.org/10.1666/05067.1openalex-snapshot
FOSSIL LEAF SPECIES FROM THE FOX HILLS FORMATION (UPPER CRETACEOUS: NORTH DAKOTA, USA) AND THEIR PALEOGEOGRAPHIC SIGNIFICANCE
inferredcites →https://doi.org/10.17520/biods.2019373openalex-snapshot
The current status, problems, and policy suggestions for reconstructing the plant tree of life
inferredcites →https://doi.org/10.2307/2656724openalex-snapshot
A phylogenetic analysis of Rhamnaceae using rbcL and trnL‐F plastid DNA sequences
inferredcites →https://doi.org/10.3732/ajb.94.10.1658openalex-snapshot
Reproductive structures of Rhamnaceae from the Cerro del Pueblo (Late Cretaceous, Coahuila) and Coatzingo (Oligocene, Puebla) Formations, Mexico
inferredcites →https://doi.org/10.7717/peerj.14573openalex-snapshot
Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin
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