On the public citation graph

Discerning incomplete lineage sorting and reticulate evolution—the case of Hoya (Apocynaceae)

https://doi.org/10.2139/ssrn.6097240
0 signed · 55 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1048openalex-snapshot
Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
inferredcites →https://doi.org/10.1002/tax.12713openalex-snapshot
Phylogeny of Marsdenieae (Apocynaceae, Asclepiadoideae) based on chloroplast and nuclear loci, with a conspectus of the genera
inferredcites →https://doi.org/10.1002/tax.601002openalex-snapshot
Revisiting the wax plants ( Hoya, Marsdenieae, Apocynaceae): Phylogenetic tree using the matK gene and psbA-trnH intergenic spacer
inferredcites →https://doi.org/10.1006/bojl.2000.0380openalex-snapshot
Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
inferredcites →https://doi.org/10.1007/bf00017442openalex-snapshot
Heteroplasmy of chloroplast DNA in Medicago
inferredcites →https://doi.org/10.1016/j.cub.2015.07.060openalex-snapshot
Phylogenomic Insights into Animal Evolution
inferredcites →https://doi.org/10.1016/j.tig.2020.08.006openalex-snapshot
Horizontal Gene Transfer in Eukaryotes: Not if, but How Much?
inferredcites →https://doi.org/10.1016/j.ympev.2020.106838openalex-snapshot
Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae
inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot
Inferring ancient divergences requires genes with strong phylogenetic signals
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/s41437-022-00540-2openalex-snapshot
Inheritance through the cytoplasm
inferredcites →https://doi.org/10.1038/s41579-021-00650-4openalex-snapshot
Horizontal gene transfer and adaptive evolution in bacteria
inferredcites →https://doi.org/10.1038/s41586-021-03519-xopenalex-snapshot
A high-quality bonobo genome refines the analysis of hominid evolution
inferredcites →https://doi.org/10.1038/s41598-021-93890-6openalex-snapshot
Plastome evolution and organisation in the Hoya group (Apocynaceae)
inferredcites →https://doi.org/10.1073/pnas.84.24.9054openalex-snapshot
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot
DendroPy: a Python library for phylogenetic computing
inferredcites →https://doi.org/10.1093/bioinformatics/btq243openalex-snapshot
The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot
ASTRAL: genome-scale coalescent-based species tree estimation
inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
inferredcites →https://doi.org/10.1093/botlinnean/boae011openalex-snapshot
Morphological diversity and evolutionary changes of pollinaria in Hoya (Marsdenieae: Apocynaceae)
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msab063openalex-snapshot
Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot
PhyloNetworks: A Package for Phylogenetic Networks
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/molbev/msz170openalex-snapshot
“Ghost Introgression” As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex
inferredcites →https://doi.org/10.1093/oso/9780195069174.003.0004openalex-snapshot
lntrogression and Its Consequences in Plants
inferredcites →https://doi.org/10.1093/sysbio/syaa085openalex-snapshot
Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias)
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1111/boj.12156openalex-snapshot
On the systematic position of some Asian enigmatic genera of Asclepiadoideae (Apocynaceae)
inferredcites →https://doi.org/10.1111/eva.12367openalex-snapshot
Hybridization and extinction
inferredcites →https://doi.org/10.1111/evo.13736openalex-snapshot
Biodiversity loss through speciation collapse: Mechanisms, warning signals, and possible rescue*
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/nph.13482openalex-snapshot
Adaptive radiation versus ‘radiation’ and ‘explosive diversification’: why conceptual distinctions are fundamental to understanding evolution
inferredcites →https://doi.org/10.1111/nph.14530openalex-snapshot
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae:Diplostephium)
inferredcites →https://doi.org/10.1111/nph.15386openalex-snapshot
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers ( Helianthus )
inferredcites →https://doi.org/10.1111/nph.17956openalex-snapshot
Species divergence with gene flow and hybrid speciation on the Qinghai–Tibet Plateau
inferredcites →https://doi.org/10.1111/tpj.16850openalex-snapshot
Uniparental silencing of 5S rRNA genes in plant allopolyploids – insights from Cardamine (Brassicaceae)
inferredcites →https://doi.org/10.1146/annurev-micro-040820-124627openalex-snapshot
Horizontal Gene Transfer in Archaea—From Mechanisms to Genome Evolution
inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092039openalex-snapshot
The Role of Hybridization in Plant Speciation
inferredcites →https://doi.org/10.1186/1471-2229-6-17openalex-snapshot
Rapid and accurate pyrosequencing of angiosperm plastid genomes.
inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
inferredcites →https://doi.org/10.12705/631.3openalex-snapshot
Wax plants ( Hoya , Apocynaceae) evolution: Epiphytism drives successful radiation
inferredcites →https://doi.org/10.2307/2399846openalex-snapshot
Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL
inferredcites →https://doi.org/10.2307/2419070openalex-snapshot
Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy
inferredcites →https://doi.org/10.3372/wi.50.50112openalex-snapshot
Phylogenetic studies in the Hoya group (Apocynaceae, Marsdenieae): the position of Anatropanthus and Oreosparte
inferredcites →https://doi.org/10.3389/fpls.2021.814833openalex-snapshot
Analysis of the Complete Plastomes of 31 Species of Hoya Group: Insights Into Their Comparative Genomics and Phylogenetic Relationships
inferredcites →https://doi.org/10.3417/0026-6493(2007)94[36:prbhat]2.0.co;2openalex-snapshot
PHYLOGENETIC RELATIONSHIPS BETWEENHOYAAND THE MONOTYPIC GENERA MADANGIA, ABSOLMSIA, AND MICHOLITZIA (APOCYNACEAE, MARSDENIEAE): INSIGHTS FROM FLOWER MORPHOLOGY1
inferredcites →https://doi.org/10.3732/ajb.1000404openalex-snapshot
Angiosperm phylogeny: 17 genes, 640 taxa
inferredcites →https://doi.org/10.3732/ajb.1100356openalex-snapshot
Targeted enrichment strategies for next‐generation plant biology
inferredcites →https://doi.org/10.3732/apps.1300063openalex-snapshot
A long PCR–based approach for DNA enrichment prior to next‐generation sequencing for systematic studies
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.