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First molecular evidence for ancient hybridization in Hoya (Apocynaceae)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

inferredcites →https://doi.org/10.1002/tax.12713openalex-snapshot

Phylogeny of Marsdenieae (Apocynaceae, Asclepiadoideae) based on chloroplast and nuclear loci, with a conspectus of the genera

inferredcites →https://doi.org/10.1002/tax.601002openalex-snapshot

Revisiting the wax plants ( Hoya, Marsdenieae, Apocynaceae): Phylogenetic tree using the matK gene and psbA-trnH intergenic spacer

inferredcites →https://doi.org/10.1006/bojl.2000.0380openalex-snapshot

Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences

inferredcites →https://doi.org/10.1007/bf00017442openalex-snapshot

Heteroplasmy of chloroplast DNA in Medicago

inferredcites →https://doi.org/10.1016/j.cell.2022.03.034openalex-snapshot

Incomplete lineage sorting and phenotypic evolution in marsupials

inferredcites →https://doi.org/10.1016/j.cub.2015.07.060openalex-snapshot

Phylogenomic Insights into Animal Evolution

inferredcites →https://doi.org/10.1016/j.tig.2020.08.006openalex-snapshot

Horizontal Gene Transfer in Eukaryotes: Not if, but How Much?

inferredcites →https://doi.org/10.1016/j.ympev.2020.106838openalex-snapshot

Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae

inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot

Inferring ancient divergences requires genes with strong phylogenetic signals

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/s41437-022-00540-2openalex-snapshot

Inheritance through the cytoplasm

inferredcites →https://doi.org/10.1038/s41579-021-00650-4openalex-snapshot

Horizontal gene transfer and adaptive evolution in bacteria

inferredcites →https://doi.org/10.1038/s41586-021-03519-xopenalex-snapshot

A high-quality bonobo genome refines the analysis of hominid evolution

inferredcites →https://doi.org/10.1038/s41598-021-93890-6openalex-snapshot

Plastome evolution and organisation in the Hoya group (Apocynaceae)

inferredcites →https://doi.org/10.1073/pnas.84.24.9054openalex-snapshot

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot

Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments

inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot

DendroPy: a Python library for phylogenetic computing

inferredcites →https://doi.org/10.1093/bioinformatics/btq243openalex-snapshot

The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell

inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot

ASTRAL: genome-scale coalescent-based species tree estimation

inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

inferredcites →https://doi.org/10.1093/botlinnean/boae011openalex-snapshot

Morphological diversity and evolutionary changes of pollinaria in Hoya (Marsdenieae: Apocynaceae)

inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

inferredcites →https://doi.org/10.1093/molbev/msab063openalex-snapshot

Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus

inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot

Application of Phylogenetic Networks in Evolutionary Studies

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot

PhyloNetworks: A Package for Phylogenetic Networks

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/molbev/msz170openalex-snapshot

“Ghost Introgression” As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex

inferredcites →https://doi.org/10.1093/sysbio/syaa083openalex-snapshot

The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales

inferredcites →https://doi.org/10.1093/sysbio/syaa085openalex-snapshot

Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias)

inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

inferredcites →https://doi.org/10.1111/boj.12156openalex-snapshot

On the systematic position of some Asian enigmatic genera of Asclepiadoideae (Apocynaceae)

inferredcites →https://doi.org/10.1111/eva.12367openalex-snapshot

Hybridization and extinction

inferredcites →https://doi.org/10.1111/evo.13736openalex-snapshot

Biodiversity loss through speciation collapse: Mechanisms, warning signals, and possible rescue*

inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot

Hybridization and speciation

inferredcites →https://doi.org/10.1111/nph.13482openalex-snapshot

Adaptive radiation versus ‘radiation’ and ‘explosive diversification’: why conceptual distinctions are fundamental to understanding evolution

inferredcites →https://doi.org/10.1111/nph.14530openalex-snapshot

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae:Diplostephium)

inferredcites →https://doi.org/10.1111/nph.15099openalex-snapshot

Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)

inferredcites →https://doi.org/10.1111/nph.15386openalex-snapshot

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers ( Helianthus )

inferredcites →https://doi.org/10.1111/nph.17956openalex-snapshot

Species divergence with gene flow and hybrid speciation on the Qinghai–Tibet Plateau

inferredcites →https://doi.org/10.1111/nph.18525openalex-snapshot

Whole‐genome analyses disentangle reticulate evolution of primroses in a biodiversity hotspot

inferredcites →https://doi.org/10.1111/tpj.16850openalex-snapshot

Uniparental silencing of 5S rRNA genes in plant allopolyploids – insights from Cardamine (Brassicaceae)

inferredcites →https://doi.org/10.1127/0941-2948/2006/0130openalex-snapshot

World Map of the Köppen-Geiger climate classification updated

inferredcites →https://doi.org/10.1146/annurev-micro-040820-124627openalex-snapshot

Horizontal Gene Transfer in Archaea—From Mechanisms to Genome Evolution

inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092039openalex-snapshot

The Role of Hybridization in Plant Speciation

inferredcites →https://doi.org/10.1186/1471-2229-6-17openalex-snapshot

Rapid and accurate pyrosequencing of angiosperm plastid genomes.

inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

inferredcites →https://doi.org/10.12705/631.3openalex-snapshot

Wax plants ( Hoya , Apocynaceae) evolution: Epiphytism drives successful radiation

inferredcites →https://doi.org/10.2307/2399846openalex-snapshot

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

inferredcites →https://doi.org/10.2307/2419070openalex-snapshot

Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

inferredcites →https://doi.org/10.3372/wi.50.50112openalex-snapshot

Phylogenetic studies in the Hoya group (Apocynaceae, Marsdenieae): the position of Anatropanthus and Oreosparte

inferredcites →https://doi.org/10.3389/fpls.2021.814833openalex-snapshot

Analysis of the Complete Plastomes of 31 Species of Hoya Group: Insights Into Their Comparative Genomics and Phylogenetic Relationships

inferredcites →https://doi.org/10.3417/0026-6493(2007)94[36:prbhat]2.0.co;2openalex-snapshot

PHYLOGENETIC RELATIONSHIPS BETWEENHOYAAND THE MONOTYPIC GENERA MADANGIA, ABSOLMSIA, AND MICHOLITZIA (APOCYNACEAE, MARSDENIEAE): INSIGHTS FROM FLOWER MORPHOLOGY1

inferredcites →https://doi.org/10.3732/ajb.1000404openalex-snapshot

Angiosperm phylogeny: 17 genes, 640 taxa

inferredcites →https://doi.org/10.3732/ajb.1100356openalex-snapshot

Targeted enrichment strategies for next‐generation plant biology

inferredcites →https://doi.org/10.3732/apps.1300063openalex-snapshot

A long PCR–based approach for DNA enrichment prior to next‐generation sequencing for systematic studies

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