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DNA-SIP reveals salinity-associated niche differentiation of potentially active methanogens in mangrove soils

https://doi.org/10.2139/ssrn.7174571
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DNA and RNA Stable Isotope Probing of Methylotrophic Methanogenic Archaea
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The role of bacteria in nutrient recycling in tropical mangrove and other coastal benthic ecosystems
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Kinetic mechanism for the ability of sulfate reducers to out-compete methanogens for acetate
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Anaerobic Methane-Oxidizing Microbial Community in a Coastal Marine Sediment: Anaerobic Methanotrophy Dominated by ANME-3
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Community Structure of Active Aerobic Methanotrophs in Red Mangrove (Kandelia obovata) Soils Under Different Frequency of Tides
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Methanotrophic Community Detected by DNA-SIP at Bertioga’s Mangrove Area, Southeast Brazil
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Spatial and seasonal variation of methanogenic community in a river-bay system in South China
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Acetoclastic archaea adaptation under increasing temperature in lake sediments and wetland soils from Alaska
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Diversity and identification of methanogenic archaea and sulphate-reducing bacteria in sediments from a pristine tropical mangrove
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Methylococcaceae are the dominant active aerobic methanotrophs in a Chinese tidal marsh
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Salinity Influence on Methane Emissions from Tidal Marshes
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Greenhouse Gas Emissions from a Created Brackish Marsh in Eastern North Carolina
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Model for the distribution of sulfate reduction and methanogenesis in freshwater sediments
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Methane production, sulfate reduction and competition for substrates in the sediments of Lake Washington
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Sulfur Cycle
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Growth of methanogens in an oxic soil microcosm: Elucidation by a DNA-SIP experiment using 13C-labeled dried rice callus
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Organic carbon dynamics in mangrove ecosystems: A review
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Aquaculture drastically increases methane production by favoring acetoclastic rather than hydrogenotrophic methanogenesis in shrimp pond sediments
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A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
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Seasonal variation and flux of dissolved nutrients in the Danshuei Estuary, Taiwan: A hypoxic subtropical mountain river
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Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and brackish wetland sediments
inferredcites →https://doi.org/10.1016/j.geoderma.2022.116082openalex-snapshot
Propagule limitation affects the response of soil methane oxidizer community to increased salinity
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Seasonal dynamics of 13C-labeled methanotrophic communities in constructed wetlands of different ages in Taiwan
inferredcites →https://doi.org/10.1016/j.micres.2017.05.004openalex-snapshot
DNA-based stable isotope probing identifies formate-metabolizing methanogenic archaea in paddy soil
inferredcites →https://doi.org/10.1016/j.mimet.2014.05.006openalex-snapshot
Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR
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Does universal 16S rRNA gene amplicon sequencing of environmental communities provide an accurate description of nitrifying guilds?
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Metatranscriptomics reveals different features of methanogenic archaea among global vegetated coastal ecosystems
inferredcites →https://doi.org/10.1016/j.scitotenv.2024.175677openalex-snapshot
Methylotrophic substrates stimulated higher methane production than competitive substrates in mangrove sediments
inferredcites →https://doi.org/10.1016/j.soilbio.2020.107775openalex-snapshot
Sonneratia apetala introduction alters methane cycling microbial communities and increases methane emissions in mangrove ecosystems
inferredcites →https://doi.org/10.1016/j.syapm.2014.11.006openalex-snapshot
Phylogenetic identification of methanogens assimilating acetate-derived carbon in dairy and swine manures
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Effect of 2-bromo-ethane sulfonate, molybdate and chloroform on acetate consumption by methanogenic and sulfate-reducing populations in freshwater sediment
inferredcites →https://doi.org/10.1016/s0929-1393(01)00131-7openalex-snapshot
Relationship between microbial biomass and extractable organic carbon content in volcanic and non-volcanic ash soil
inferredcites →https://doi.org/10.1021/acs.est.3c05948openalex-snapshot
Magnetite Alters the Metabolic Interaction between Methanogens and Sulfate-Reducing Bacteria
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Methane Oxidation Potential and Niche Differentiation of Aerobic Methanotrophs in Coastal Mangrove Forest Soils along a 370 Km Long Coastline in Taiwan
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Effect of nitrogen fertilization on methane oxidation, abundance, community structure, and gene expression of methanotrophs in the rice rhizosphere
inferredcites →https://doi.org/10.1038/ismej.2011.141openalex-snapshot
Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/ismej.2014.148openalex-snapshot
Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette
inferredcites →https://doi.org/10.1038/ismej.2016.80openalex-snapshot
A stable genetic polymorphism underpinning microbial syntrophy
inferredcites →https://doi.org/10.1038/ngeo1123openalex-snapshot
Mangroves among the most carbon-rich forests in the tropics
inferredcites →https://doi.org/10.1038/nprot.2007.109openalex-snapshot
DNA stable-isotope probing
inferredcites →https://doi.org/10.1038/nrmicro1892openalex-snapshot
The ecology and biotechnology of sulphate-reducing bacteria
inferredcites →https://doi.org/10.1038/s41396-018-0269-8openalex-snapshot
Deltaproteobacteria ( Pelobacter ) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment
inferredcites →https://doi.org/10.1038/s41467-022-28034-zopenalex-snapshot
Microbiome differential abundance methods produce different results across 38 datasets
inferredcites →https://doi.org/10.1038/s41522-024-00638-xopenalex-snapshot
Depth heterogeneity of lignin-degrading microbiome and organic carbon processing in mangrove sediments
inferredcites →https://doi.org/10.1038/s41558-024-01927-1openalex-snapshot
Methane oxidation minimizes emissions and offsets to carbon burial in mangroves
inferredcites →https://doi.org/10.1038/srep40561openalex-snapshot
Improvement in the biochemical and chemical properties of badland soils by thorny bamboo
inferredcites →https://doi.org/10.1093/femsec/fiu006openalex-snapshot
Bacterial communities associated with four ctenophore genera from the German Bight (North Sea)
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Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
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Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
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Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent
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Methanolobus mangrovi sp. nov. and Methanolobus sediminis sp. nov, two novel methylotrophic methanogens isolated from mangrove sediments in China
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Spartina alterniflora invasion drastically increases methane production potential by shifting methanogenesis from hydrogenotrophic to methylotrophic pathway in a coastal marsh
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Urease gene‐containing A rchaea dominate autotrophic ammonia oxidation in two acid soils
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New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase
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Diversity of dimethylsulfide‐degrading methanogens and sulfate‐reducing bacteria in anoxic sediments along the Medway Estuary, UK
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Is Everything Everywhere? Dispersal Limitation Impacts Methanotroph Community Functioning
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Acetoclastic methane formation fromEucalyptusdetritus in pristine hydrocarbon-rich river sediments byMethanosarcinales
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Conceptualizing functional traits and ecological characteristics of methane‐oxidizing bacteria as life strategies
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Phylogenetic Comparison of the Methanogenic Communities from an Acidic, Oligotrophic Fen and an Anaerobic Digester Treating Municipal Wastewater Sludge
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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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Spatial-Temporal Pattern of Sulfate-Dependent Anaerobic Methane Oxidation in an Intertidal Zone of the East China Sea
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Sulfate Reducers Can Outcompete Methanogens at Freshwater Sulfate Concentrations
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inferredcites →https://doi.org/10.1146/annurev-marine-010213-135020openalex-snapshot
Carbon Cycling and Storage in Mangrove Forests
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Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments
inferredcites →https://doi.org/10.1186/s40793-025-00801-7openalex-snapshot
Methane cycling microorganisms drive seasonal variation of methane emission in mangrove ecosystems
inferredcites →https://doi.org/10.1196/annals.1419.019openalex-snapshot
Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
inferredcites →https://doi.org/10.1371/journal.pone.0187749openalex-snapshot
Ecosystem carbon stocks of mangroves across broad environmental gradients in West-Central Africa: Global and regional comparisons
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Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8
inferredcites →https://doi.org/10.1590/s1519-69842012000300003openalex-snapshot
Effect of sediment composition on methane concentration and production in the transition zone of a mangrove (Sepetiba Bay, Rio de Janeiro, Brazil)
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Identification of novel potential acetate-oxidizing bacteria in an acetate-fed methanogenic chemostat based on DNA stable isotope probing
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Analysis of methane-producing and metabolizing archaeal and bacterial communities in sediments of the northern South China Sea and coastal Mai Po Nature Reserve revealed by PCR amplification of mcrA and pmoA genes
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Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker
inferredcites →https://doi.org/10.3390/f11050492openalex-snapshot
Biogeochemical Processes of C and N in the Soil of Mangrove Forest Ecosystems
inferredcites →https://doi.org/10.3390/f14030564openalex-snapshot
Characterisation of Methane Production Pathways in Sediment of Overwashed Mangrove Forests
inferredcites →https://doi.org/10.3390/microorganisms8081248openalex-snapshot
Niche Differentiation of Active Methane-Oxidizing Bacteria in Estuarine Mangrove Forest Soils in Taiwan
inferredcites →https://doi.org/10.3791/2027openalex-snapshot
DNA Stable-Isotope Probing (DNA-SIP)
inferredcites →https://doi.org/10.5194/bg-13-2981-2016openalex-snapshot
Methane and sulfate dynamics in sediments from mangrove-dominated tropical coastal lagoons, Yucatán, Mexico
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