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Phylogenetic and metabolic diversity of mercury-methylating microorganisms in paddy soils across China

https://doi.org/10.2139/ssrn.7267279
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Linkage between community diversity of sulfate-reducing microorganisms and methylmercury concentration in paddy soil
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BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
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Soil aluminum oxides determine biological nitrogen fixation and diazotrophic communities across major types of paddy soils in China
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DSF-family quorum sensing signal-mediated intraspecies, interspecies, and inter-kingdom communication
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Anaerobic mercury methylators inhabit sinking particles of oxic water columns
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Influence of Legacy Mercury on Antibiotic Resistomes: Evidence from Agricultural Soils with Different Cropping Systems
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Trophic Dynamics of Mercury in the Baltic Archipelago Sea Food Web: The Impact of Ecological and Ecophysiological Traits
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Distribution and Environmental Preference of Potential Mercury Methylators in Paddy Soils across China
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Urban Sewer System Is an Incubator of Sewage-Derived Mercury-Methylating Microorganisms: A New Public Health Challenge
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Global Survey of Mercury Methylation and Demethylation Microbial Communities in Wastewater and Activated Sludge
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Unraveling Microbial Communities Associated with Methylmercury Production in Paddy Soils
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Demethylation─The Other Side of the Mercury Methylation Coin: A Critical Review
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The Roles of Thiols in the Bacterial Organomercurial Lyase (MerB)
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The Process of Methylmercury Accumulation in Rice (Oryza sativa L.)
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Mercury Methylation by Novel Microorganisms from New Environments
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Bacterial Methylmercury Degradation in Florida Everglades Peat Sediment
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Distribution Patterns of Inorganic Mercury and Methylmercury in Tissues of Rice ( Oryza sativa L. ) Plants and Possible Bioaccumulation Pathways
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
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Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae
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PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
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Microbial mercury methylation in Antarctic sea ice
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Electron transfer in syntrophic communities of anaerobic bacteria and archaea
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Syntrophic pathways for microbial mercury methylation
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Mercury methylation by metabolically versatile and cosmopolitan marine bacteria
inferredcites →https://doi.org/10.1038/s41396-021-00992-0openalex-snapshot
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling
inferredcites →https://doi.org/10.1038/s41396-023-01360-wopenalex-snapshot
Potential for mercury methylation by Asgard archaea in mangrove sediments
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Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir
inferredcites →https://doi.org/10.1038/s41396-023-01544-4openalex-snapshot
Phylogenetic and ecophysiological novelty of subsurface mercury methylators in mangrove sediments
inferredcites →https://doi.org/10.1038/s41467-019-13036-1openalex-snapshot
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
inferredcites →https://doi.org/10.1038/s41564-019-0534-2openalex-snapshot
An archaeal origin of the Wood–Ljungdahl H4MPT branch and the emergence of bacterial methylotrophy
inferredcites →https://doi.org/10.1038/s41564-024-01704-yopenalex-snapshot
Co-expression analysis reveals distinct alliances around two carbon fixation pathways in hydrothermal vent symbionts
inferredcites →https://doi.org/10.1038/s41564-025-02062-zopenalex-snapshot
Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
inferredcites →https://doi.org/10.1038/s41579-023-00980-5openalex-snapshot
The interplay between microbial communities and soil properties
inferredcites →https://doi.org/10.1038/s41596-022-00747-xopenalex-snapshot
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
inferredcites →https://doi.org/10.1038/s41597-024-03332-xopenalex-snapshot
Metagenomic sequencing and reconstruction of 82 microbial genomes from barley seed communities
inferredcites →https://doi.org/10.1038/s43705-023-00277-xopenalex-snapshot
Mining-impacted rice paddies select for Archaeal methylators and reveal a putative (Archaeal) regulator of mercury methylation
inferredcites →https://doi.org/10.1073/pnas.1321542111openalex-snapshot
Incomplete Wood–Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi
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Recent developments in the MAFFT multiple sequence alignment program
inferredcites →https://doi.org/10.1093/bioinformatics/btaf147openalex-snapshot
CoverM: read alignment statistics for metagenomics
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv033openalex-snapshot
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-snapshot
MultiQC: summarize analysis results for multiple tools and samples in a single report
inferredcites →https://doi.org/10.1093/bioinformatics/btz848openalex-snapshot
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx148openalex-snapshot
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
inferredcites →https://doi.org/10.1093/nar/gkad359openalex-snapshot
Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1755-0998.13687openalex-snapshot
A consensus protocol for the recovery of mercury methylation genes from metagenomes
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Microbiology of flooded rice paddies
inferredcites →https://doi.org/10.1126/sciadv.1500675openalex-snapshot
Global prevalence and distribution of genes and microorganisms involved in mercury methylation
inferredcites →https://doi.org/10.1126/science.1230667openalex-snapshot
The Genetic Basis for Bacterial Mercury Methylation
inferredcites →https://doi.org/10.1126/science.1242838openalex-snapshot
Global Change and Mercury
inferredcites →https://doi.org/10.1128/aem.04225-13openalex-snapshot
Analysis of the Microbial Community Structure by Monitoring an Hg Methylation Gene ( hgcA ) in Paddy Soils along an Hg Gradient
inferredcites →https://doi.org/10.1128/msystems.00736-22openalex-snapshot
Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation
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Enzymology of the Wood–Ljungdahl Pathway of Acetogenesis
inferredcites →https://doi.org/10.1289/ehp.1001915openalex-snapshot
In Inland China, Rice, Rather than Fish, Is the Major Pathway for Methylmercury Exposure
inferredcites →https://doi.org/10.3389/fmicb.2020.01369openalex-snapshot
Nitrospina-Like Bacteria Are Potential Mercury Methylators in the Mesopelagic Zone in the East China Sea
inferredcites →https://doi.org/10.3389/fmicb.2021.682605openalex-snapshot
Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an Origin for MerA Among Thermophilic Archaea
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