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Fine-Tuning Bidirectional Encoder Representations From Transformers (BERT)–Based Models on Large-Scale Electronic Health Record Notes: An Empirical Study

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Overview of the First Natural Language Processing Challenge for Extracting Medication, Indication, and Adverse Drug Events from Electronic Health Record Notes (MADE 1.0)
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NCBI disease corpus: A resource for disease name recognition and concept normalization
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DNorm: disease name normalization with pairwise learning to rank
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TaggerOne: joint named entity recognition and normalization with semi-Markov Models
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A transition-based joint model for disease named entity recognition and normalization
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MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database
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CD-REST: a system for extracting chemical-induced disease relation in literature
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BioCreative V CDR task corpus: a resource for chemical disease relation extraction
inferredcites →https://doi.org/10.1093/jamia/ocv108openalex-snapshot
Normalizing clinical terms using learned edit distance patterns
inferredcites →https://doi.org/10.1093/nar/gkh061openalex-snapshot
The Unified Medical Language System (UMLS): integrating biomedical terminology
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Using rule-based natural language processing to improve disease normalization in biomedical text
inferredcites →https://doi.org/10.1136/jamia.2009.002733openalex-snapshot
An overview of MetaMap: historical perspective and recent advances
inferredcites →https://doi.org/10.1186/s12859-017-1805-7openalex-snapshot
CNN-based ranking for biomedical entity normalization
inferredcites →https://doi.org/10.18653/v1/d15-1166openalex-snapshot
Effective Approaches to Attention-based Neural Machine Translation
inferredcites →https://doi.org/10.18653/v1/d17-1092openalex-snapshot
Temporal Information Extraction for Question Answering Using Syntactic Dependencies in an LSTM-based Architecture
inferredcites →https://doi.org/10.18653/v1/n18-2060openalex-snapshot
Syntactic Patterns Improve Information Extraction for Medical Search
inferredcites →https://doi.org/10.18653/v1/n19-1423openalex-snapshot
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding
inferredcites →https://doi.org/10.18653/v1/p18-1031openalex-snapshot
Universal Language Model Fine-tuning for Text Classification
inferredcites →https://doi.org/10.2196/13316openalex-snapshot
Technological Innovations in Disease Management: Text Mining US Patent Data From 1995 to 2017
inferredcites →https://doi.org/10.2196/jmir.8669openalex-snapshot
A Natural Language Processing System That Links Medical Terms in Electronic Health Record Notes to Lay Definitions: System Development Using Physician Reviews
inferredcites →https://doi.org/10.2196/jmir.9.1.e4openalex-snapshot
Term Identification Methods for Consumer Health Vocabulary Development

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inferred← citeshttps://doi.org/10.3389/fphys.2022.760000openalex-snapshot
WaSP-ECG: A Wave Segmentation Pretraining Toolkit for Electrocardiogram Analysis
inferred← citeshttps://doi.org/10.3389/fpsyt.2022.861930openalex-snapshot
Identification and Impact Analysis of Family History of Psychiatric Disorder in Mood Disorder Patients With Pretrained Language Model
inferred← citeshttps://doi.org/10.3390/ai5030081openalex-snapshot
Enhancing Literature Review Efficiency: A Case Study on Using Fine-Tuned BERT for Classifying Focused Ultrasound-Related Articles
inferred← citeshttps://doi.org/10.3390/electronics9091364openalex-snapshot
Automatic Identification of High Impact Relevant Articles to Support Clinical Decision Making Using Attention-Based Deep Learning
inferred← citeshttps://doi.org/10.3390/healthcare13202614openalex-snapshot
Fine-Tuning Large Language Models for Effective Nutrition Support in Residential Aged Care: A Domain Expertise Approach
inferred← citeshttps://doi.org/10.3390/jcm14155490openalex-snapshot
Large Language Models for Adverse Drug Events: A Clinical Perspective
inferred← citeshttps://doi.org/10.3390/jpm16040192openalex-snapshot
Artificial Intelligence in Cardiovascular Medicine: A Giant Step in Personalized Medicine?
inferred← citeshttps://doi.org/10.3390/s22249609openalex-snapshot
Automated Detection of Substance-Use Status and Related Information from Clinical Text
inferred← citeshttps://doi.org/10.3390/s23239355openalex-snapshot
BIR: Biomedical Information Retrieval System for Cancer Treatment in Electronic Health Record Using Transformers
inferred← citeshttps://doi.org/10.3390/tropicalmed9090216openalex-snapshot
Enhancing the Interpretability of Malaria and Typhoid Diagnosis with Explainable AI and Large Language Models
inferred← citeshttps://doi.org/10.35940/ijeat.b3861.1212222openalex-snapshot
Examining Natural Language Processing Techniques in the Education and Healthcare Fields
inferred← citeshttps://doi.org/10.3934/mbe.2023047openalex-snapshot
Stacking-BERT model for Chinese medical procedure entity normalization
inferred← citeshttps://doi.org/10.47820/recima21.v6i10.6821openalex-snapshot
O USO DA INTELIGÊNCIA ARTIFICIAL NO AUXÍLIO DA TRIAGEM DE ADULTOS EM SERVIÇOS DE EMERGÊNCIA
inferred← citeshttps://doi.org/10.48550/arxiv.2110.05006openalex-snapshot
Pre-trained Language Models in Biomedical Domain: A Systematic Survey
inferred← citeshttps://doi.org/10.5005/jp-journals-11002-0095openalex-snapshot
Artificial Intelligence in Newborn Medicine
inferred← citeshttps://doi.org/10.59297/5xkjq067openalex-snapshot
Calibrated Semi-Supervised Models for Disaster Response based on Training Dynamics
inferred← citeshttps://doi.org/10.6084/m9.figshare.13245838openalex-snapshot
Additional file 2 of Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies
inferred← citeshttps://doi.org/10.6084/m9.figshare.13245841openalex-snapshot
Additional file 3 of Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies
inferred← citeshttps://doi.org/10.6084/m9.figshare.26571859openalex-snapshot
Additional file 1 of Precision information extraction for rare disease epidemiology at scale
inferred← citeshttps://doi.org/10.6084/m9.figshare.26571862openalex-snapshot
Additional file 2 of Precision information extraction for rare disease epidemiology at scale
inferred← citeshttps://doi.org/10.6084/m9.figshare.26571865openalex-snapshot
Additional file 3 of Precision information extraction for rare disease epidemiology at scale
inferred← citeshttps://doi.org/10.7717/peerj-cs.1888openalex-snapshot
exKidneyBERT: a language model for kidney transplant pathology reports and the crucial role of extended vocabularies
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