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Who, Where, What, Wren? Using Ancient DNA to Examine the Veracity of Museum Specimen Data: A Case Study of the New Zealand Rock Wren (Xenicus gilviventris)

https://doi.org/10.3389/fevo.2019.00496

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-9176-1_1openalex-snapshot

Setting Up an Ancient DNA Laboratory

inferredcites →https://doi.org/10.1007/bf02109479openalex-snapshot

Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens

inferredcites →https://doi.org/10.1007/s10530-008-9408-xopenalex-snapshot

The end of an 80-million year experiment: a review of evidence describing the impact of introduced rodents on New Zealand’s ‘mammal-free’ invertebrate fauna

inferredcites →https://doi.org/10.1007/s10592-016-0908-4openalex-snapshot

Strong isolation by distance argues for separate population management of endangered blue duck (Hymenolaimus malacorhynchos)

inferredcites →https://doi.org/10.1016/j.tree.2004.07.006openalex-snapshot

New developments in museum-based informatics and applications in biodiversity analysis

inferredcites →https://doi.org/10.1016/j.tree.2007.08.017openalex-snapshot

Back to the future: museum specimens in population genetics

inferredcites →https://doi.org/10.1016/j.ympev.2006.04.012openalex-snapshot

A molecular phylogeny of New Zealand’s Petroica (Aves: Petroicidae) species based on mitochondrial DNA sequences

inferredcites →https://doi.org/10.1016/j.ympev.2014.12.012openalex-snapshot

Differential introgression and effective size of marker type influence phylogenetic inference of a recently divergent avian group (Phasianidae: Tympanuchus)

inferredcites →https://doi.org/10.1016/j.ympev.2016.05.038openalex-snapshot

Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens

inferredcites →https://doi.org/10.1016/s0169-5347(97)01177-4openalex-snapshot

The role of natural history collections in documenting species declines

inferredcites →https://doi.org/10.1038/381484a0openalex-snapshot

Ancient DNA and island endemics

inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot

jModelTest 2: more models, new heuristics and parallel computing

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.02063.xopenalex-snapshot

The incomplete natural history of mitochondria

inferredcites →https://doi.org/10.1071/mu05007openalex-snapshot

Recent evolutionary history of New Zealand's North and South Island Kokako (Callaeas cinerea) inferred from mitochondrial DNA sequences

inferredcites →https://doi.org/10.1071/mu925204openalex-snapshot

Bird-Life Around Wellington, N.Z.

inferredcites →https://doi.org/10.1073/pnas.0401892101openalex-snapshot

Phylogeny and diversification of the largest avian radiation

inferredcites →https://doi.org/10.1073/pnas.0801507105openalex-snapshot

Dating the late prehistoric dispersal of Polynesians to New Zealand using the commensal Pacific rat

inferredcites →https://doi.org/10.1073/pnas.1314445110openalex-snapshot

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

inferredcites →https://doi.org/10.1080/03014223.1994.9518003openalex-snapshot

Patterns of range contractions and extinctions in the New Zealand herpetofauna following human colonisation

inferredcites →https://doi.org/10.1080/03014223.2001.9518262openalex-snapshot

A working list of breeding bird species of the New Zealand region at first human contact

inferredcites →https://doi.org/10.1080/03014223.2018.1523202openalex-snapshot

Evidence for breeding of Megadyptes penguins in the North Island at the time of human arrival

inferredcites →https://doi.org/10.1080/03036758.2012.732585openalex-snapshot

Using ancient DNA to enhance museum collections: a case study of rare kiwi ( Apteryx spp.) specimens

inferredcites →https://doi.org/10.1080/03036758.2014.972962openalex-snapshot

Morphological and ancient DNA analyses reveal inaccurate labels on two of Buller's bird specimens

inferredcites →https://doi.org/10.1080/10635150500234674openalex-snapshot

Between Two Extremes: Mitochondrial DNA is neither the Panacea nor the Nemesis of Phylogenetic and Taxonomic Inference

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

inferredcites →https://doi.org/10.1093/molbev/msh065openalex-snapshot

Four New Avian Mitochondrial Genomes Help Get to Basic Evolutionary Questions in the Late Cretaceous

inferredcites →https://doi.org/10.1093/nar/29.23.4793openalex-snapshot

DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

inferredcites →https://doi.org/10.1093/nar/gkm588openalex-snapshot

Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

inferredcites →https://doi.org/10.1093/sysbio/syy050openalex-snapshot

Model Selection and Parameter Inference in Phylogenetics Using Nested Sampling

inferredcites →https://doi.org/10.1098/rspb.2009.1837openalex-snapshot

Lost in translation or deliberate falsification? Genetic analyses reveal erroneous museum data for historic penguin specimens

inferredcites →https://doi.org/10.1111/2041-210x.12410openalex-snapshot

popart : full‐feature software for haplotype network construction

inferredcites →https://doi.org/10.1111/ibi.12617openalex-snapshot

Control of invasive predators improves breeding success of an endangered alpine passerine

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03891.xopenalex-snapshot

Ancient DNA applications for wildlife conservation

inferredcites →https://doi.org/10.1111/j.1469-7998.1996.tb05391.xopenalex-snapshot

Morphology and evolution of two takahe: flightless rails of New Zealand

inferredcites →https://doi.org/10.1111/j.1474-919x.1869.tb07092.xopenalex-snapshot

III.—On some New Species of New‐Zealand Birds

inferredcites →https://doi.org/10.1111/mec.13338openalex-snapshot

Geographically contrasting biodiversity reductions in a widespread New Zealand seabird

inferredcites →https://doi.org/10.1111/mec.13349openalex-snapshot

Population structure within an alpine archipelago: strong signature of past climate change in the N ew Z ealand rock wren ( X enicus gilviventris)

inferredcites →https://doi.org/10.1126/science.1146971openalex-snapshot

Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts

inferredcites →https://doi.org/10.1126/science.1157704openalex-snapshot

A Phylogenomic Study of Birds Reveals Their Evolutionary History

inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot

Whole-genome analyses resolve early branches in the tree of life of modern birds

inferredcites →https://doi.org/10.1126/science.217.4560.633openalex-snapshot

Fossil Birds from the Hawaiian Islands: Evidence for Wholesale Extinction by Man Before Western Contact

inferredcites →https://doi.org/10.1126/science.289.5482.1139bopenalex-snapshot

Ancient DNA: Do It Right or Not at All

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pone.0021247openalex-snapshot

To Clone or Not To Clone: Method Analysis for Retrieving Consensus Sequences In Ancient DNA Samples

inferredcites →https://doi.org/10.1371/journal.pone.0090769openalex-snapshot

Strong Phylogeographic Structure in a Sedentary Seabird, the Stewart Island Shag (Leucocarbo chalconotus)

inferredcites →https://doi.org/10.1648/0273-8570-71.2.250openalex-snapshot

OBTAINING, PRESERVING, AND PREPARING BIRD SPECIMENS

inferredcites →https://doi.org/10.20417/nzjecol.41.18openalex-snapshot

Impacts of introduced mammalian predators on New Zealand’s alpine fauna

inferredcites →https://doi.org/10.26496/bjz.2016.45openalex-snapshot

Investigation of ancient DNA to enhance natural history museum collections: misidentification of smooth-coated otter (Lutrogale perspicillata) specimens across multiple museums

inferredcites →https://doi.org/10.3390/genes8060164openalex-snapshot

An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks

inferredcites →https://doi.org/10.3390/genes8070184openalex-snapshot

Time to Spread Your Wings: A Review of the Avian Ancient DNA Field

inferredcites →https://doi.org/10.5860/choice.40-3418openalex-snapshot

The lost world of the moa: prehistoric life of New Zealand

inferredcites →https://doi.org/10.63172//035068xprjgoopenalex-snapshot

Discovery and extinction of the South Island snipe (Coenocorypha iredalei) on islands around Stewart Island

inferredcites →https://doi.org/10.63172//252776oqqppqopenalex-snapshot

Conservation translocations of New Zealand birds, 1863-2012

inferredcites →https://doi.org/10.63172//903073qgezbhopenalex-snapshot

Successful translocation of Snares Island snipe (Coenocorypha huegeli) to replace the extinct South Island snipe (C. iredalei)

inferredcites →https://doi.org/10.63172/591128wvpxbnopenalex-snapshot

A survey of historical laughing owl (Sceloglaux albifacies) specimens in museum collections

inferredcites →https://doi.org/10.63172/843587zxsqkpopenalex-snapshot

Changes in abundance and distribution of the rock wren (Xenicus gilviventris) in the South Island, New Zealand

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5852/ejt.2022.808.1721zenodo-depositor-declared

High alpine sorcerers: revision of the cave wētā genus Pharmacus Pictet & de Saussure (Orthoptera: Rhaphidophoridae: Macropathinae), with the description of six new species and three new subspecies

inferred← citeshttps://doi.org/10.1007/s10539-023-09911-3openalex-snapshot

The epistemological and conservation value of biological specimens

inferred← citeshttps://doi.org/10.1016/j.jnc.2024.126815openalex-snapshot

Assessing confidence in zoological specimen collection metadata for use in scientific studies

inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108741openalex-snapshot

Evolutionary history of Aotearoa New Zealand’s extinct mātuhituhi | bush wren

inferred← citeshttps://doi.org/10.1071/9781486314935.bk08025_part3openalex-snapshot

Adaptation and change

inferred← citeshttps://doi.org/10.1080/01584197.2021.1998782openalex-snapshot

Using mitochondrial DNA to identify the provenance of 19th century Kākāpō skins held in Australia’s oldest natural history collection, the Macleay

inferred← citeshttps://doi.org/10.1080/03036758.2022.2093227openalex-snapshot

Thirty years of ancient DNA and the faunal biogeography of Aotearoa New Zealand: lessons and future directions

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlae040openalex-snapshot

Ancient mitogenomes reveal evidence for the Late Miocene dispersal of mergansers to the Southern Hemisphere

inferred← citeshttps://doi.org/10.1098/rspb.2026.1044openalex-snapshot

The secret of the saws: historical DNA analysis reveals global genetic diversity loss in a highly threatened species

inferred← citeshttps://doi.org/10.1111/mec.16434openalex-snapshot

Ancient mitochondrial genomes recovered from small vertebrate bones through minimally destructive DNA extraction: Phylogeography of the New Zealand gecko genus Hoplodactylus

inferred← citeshttps://doi.org/10.1111/mec.17227openalex-snapshot

Ancient mitochondrial genomes unveil the origins and evolutionary history of New Zealand's enigmatic takahē and moho

inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2021.143openalex-snapshot

Ancient DNA of the pygmy marmoset type specimen Cebuella pygmaea (Spix, 1823) resolves a taxonomic conundrum

inferred← citeshttps://doi.org/10.63172/065535fcugrwopenalex-snapshot

Birds observed and collected by the Austrian Novara Expedition when in New Zealand, 1858–1859

inferred← citeshttps://doi.org/10.63172/537207socsmyopenalex-snapshot

Checklist of the birds of New Zealand. Fifth edition

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