On the public citation graph
Respiratory Viral Infection-Induced Microbiome Alterations and Secondary Bacterial Pneumonia
0 signed · 639 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1001/jama.2009.1496openalex-snapshot
Critically Ill Patients With 2009 Influenza A(H1N1) Infection in Canada
inferredcites →https://doi.org/10.1001/jama.2009.1536openalex-snapshot
Critically Ill Patients With 2009 Influenza A(H1N1) in Mexico
inferredcites →https://doi.org/10.1002/1521-4141(200209)32:9<2635::aid-immu2635>3.0.co;2-nopenalex-snapshot
Enhanced production of IL-18 in butyrate-treated intestinal epithelium by stimulation of the proximal promoter region
inferredcites →https://doi.org/10.1002/lary.20498openalex-snapshot
Rhinovirus enhances various bacterial adhesions to nasal epithelial cells simultaneously
inferredcites →https://doi.org/10.1007/s00284-013-0380-zopenalex-snapshot
Microbiota Regulates the TLR7 Signaling Pathway Against Respiratory Tract Influenza A Virus Infection
inferredcites →https://doi.org/10.1007/s10096-018-3305-8openalex-snapshot
The nasopharyngeal microbiota in patients with viral respiratory tract infections is enriched in bacterial pathogens
inferredcites →https://doi.org/10.1016/j.ajic.2015.04.195openalex-snapshot
Seasonal variation of respiratory pathogen colonization in asymptomatic health care professionals: A single-center, cross-sectional, 2-season observational study
inferredcites →https://doi.org/10.1016/j.cell.2009.09.033openalex-snapshot
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
inferredcites →https://doi.org/10.1016/j.cell.2017.09.016openalex-snapshot
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
inferredcites →https://doi.org/10.1016/j.chom.2013.11.005openalex-snapshot
Nasal Microenvironments and Interspecific Interactions Influence Nasal Microbiota Complexity and S. aureus Carriage
inferredcites →https://doi.org/10.1016/j.chom.2016.04.003openalex-snapshot
Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response
inferredcites →https://doi.org/10.1016/j.ijantimicag.2008.11.005openalex-snapshot
Probiotics for the prevention of respiratory tract infections: a systematic review
inferredcites →https://doi.org/10.1016/j.imbio.2007.05.001openalex-snapshot
Susceptibility of germ-free pigs to challenge with protease mutants of Salmonella enterica serovar Typhimurium
inferredcites →https://doi.org/10.1016/j.immuni.2009.08.020openalex-snapshot
The Key Role of Segmented Filamentous Bacteria in the Coordinated Maturation of Gut Helper T Cell Responses
inferredcites →https://doi.org/10.1016/j.immuni.2012.04.011openalex-snapshot
Commensal Bacteria Calibrate the Activation Threshold of Innate Antiviral Immunity
inferredcites →https://doi.org/10.1016/j.immuni.2014.08.009openalex-snapshot
TLR5-Mediated Sensing of Gut Microbiota Is Necessary for Antibody Responses to Seasonal Influenza Vaccination
inferredcites →https://doi.org/10.1016/j.immuni.2018.04.022openalex-snapshot
Dietary Fiber Confers Protection against Flu by Shaping Ly6c− Patrolling Monocyte Hematopoiesis and CD8+ T Cell Metabolism
inferredcites →https://doi.org/10.1016/j.intimp.2009.04.015openalex-snapshot
Oral administration of heat-killed Lactobacillus plantarum L-137 enhances protection against influenza virus infection by stimulation of type I interferon production in mice
inferredcites →https://doi.org/10.1016/j.jinf.2012.04.009openalex-snapshot
Bacterial co-infection with H1N1 infection in patients admitted with community acquired pneumonia
inferredcites →https://doi.org/10.1016/j.molimm.2004.05.005openalex-snapshot
Histone-deacetylase inhibitors induce the cathelicidin LL-37 in gastrointestinal cells
inferredcites →https://doi.org/10.1016/j.tim.2013.03.004openalex-snapshot
Interpreting infective microbiota: the importance of an ecological perspective
inferredcites →https://doi.org/10.1016/j.vaccine.2006.05.048openalex-snapshot
Probiotic bacteria reduced duration and severity but not the incidence of common cold episodes in a double blind, randomized, controlled trial
inferredcites →https://doi.org/10.1016/j.vaccine.2006.09.020openalex-snapshot
Modelling the co-occurrence of Streptococcus pneumoniae with other bacterial and viral pathogens in the upper respiratory tract
inferredcites →https://doi.org/10.1016/s0140-6736(58)92404-8openalex-snapshot
BACTERIOLOGY AND HISTOPATHOLOGY OF THE RESPIRATORY TRACT AND LUNGS IN FATAL ASIAN INFLUENZA
inferredcites →https://doi.org/10.1016/s0140-6736(83)92478-9openalex-snapshot
FERMENTATION IN THE HUMAN LARGE INTESTINE: EVIDENCE AND IMPLICATIONS FOR HEALTH
inferredcites →https://doi.org/10.1016/s0140-6736(85)92877-6openalex-snapshot
MYTH OF THE MARSUPIAL MOTHER: HOME CARE OF VERY LOW BIRTH WEIGHT BABIES IN BOGOTA, COLOMBIA
inferredcites →https://doi.org/10.1016/s0194-5998(99)70068-9openalex-snapshot
Effects of influenza A virus on lectin‐binding patterns in murine nasopharyngeal mucosa and on bacterial colonization
inferredcites →https://doi.org/10.1016/s1473-3099(04)00938-7openalex-snapshot
Streptococcus pneumoniae colonisation: the key to pneumococcal disease
inferredcites →https://doi.org/10.1016/s1473-3099(05)70295-4openalex-snapshot
The role of nasal carriage in Staphylococcus aureus infections
inferredcites →https://doi.org/10.1016/s1473-3099(06)70466-2openalex-snapshot
Interactions between influenza and bacterial respiratory pathogens: implications for pandemic preparedness
inferredcites →https://doi.org/10.1017/s0031182005008073openalex-snapshot
Germ-free mice produce high levels of interferon-gamma in response to infection with Leishmania major but fail to heal lesions
inferredcites →https://doi.org/10.1017/s0950268815000722openalex-snapshot
Scoping review to identify potential non-antimicrobial interventions to mitigate antimicrobial resistance in commensal enteric bacteria in North American cattle production systems
inferredcites →https://doi.org/10.1017/s0950268816001473openalex-snapshot
Co-colonization byStreptococcus pneumoniaeandStaphylococcus aureusin the throat during acute respiratory illnesses
inferredcites →https://doi.org/10.1038/4441022aopenalex-snapshot
Human gut microbes associated with obesity
inferredcites →https://doi.org/10.1038/emi.2017.101openalex-snapshot
Disordered oropharyngeal microbial communities in H7N9 patients with or without secondary bacterial lung infection
inferredcites →https://doi.org/10.1038/nature09074openalex-snapshot
Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization
inferredcites →https://doi.org/10.1038/nature11234openalex-snapshot
Structure, function and diversity of the healthy human microbiome
inferredcites →https://doi.org/10.1038/nature12726openalex-snapshot
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
inferredcites →https://doi.org/10.1038/nature17655openalex-snapshot
Normalizing the environment recapitulates adult human immune traits in laboratory mice
inferredcites →https://doi.org/10.1038/ncomms3106openalex-snapshot
Bacterial colonization dampens influenza-mediated acute lung injury via induction of M2 alveolar macrophages
inferredcites →https://doi.org/10.1038/ni.3713openalex-snapshot
Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes
inferredcites →https://doi.org/10.1038/nm.2087openalex-snapshot
Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity
inferredcites →https://doi.org/10.1038/nm1765openalex-snapshot
Inhibition of pulmonary antibacterial defense by interferon-γ during recovery from influenza infection
inferredcites →https://doi.org/10.1038/s41467-017-01803-xopenalex-snapshot
The microbiota protects against respiratory infection via GM-CSF signaling
inferredcites →https://doi.org/10.1053/jhin.1999.0680openalex-snapshot
Bacterial interference among nasal inhabitants: eradication of Staphylococcus aureus from nasal cavities by artificial implantation of Corynebacterium sp.
inferredcites →https://doi.org/10.1056/nejmc0908216openalex-snapshot
Bacterial Pathogens and Death during the 1918 Influenza Pandemic
inferredcites →https://doi.org/10.1056/nejmoa0906695openalex-snapshot
Hospitalized Patients with 2009 H1N1 Influenza in the United States, April–June 2009
inferredcites →https://doi.org/10.1073/pnas.1019378108openalex-snapshot
Microbiota regulates immune defense against respiratory tract influenza A virus infection
inferredcites →https://doi.org/10.1084/jem.20070891openalex-snapshot
Sustained desensitization to bacterial Toll-like receptor ligands after resolutionof respiratory influenza infection
inferredcites →https://doi.org/10.1084/jem.20140625openalex-snapshot
Respiratory influenza virus infection induces intestinal immune injury via microbiota-mediated Th17 cell–dependent inflammation
inferredcites →https://doi.org/10.1086/379833openalex-snapshot
Effects of Rhinovirus Infection on the Adherence ofStreptococcus pneumoniaeto Cultured Human Airway Epithelial Cells
inferredcites →https://doi.org/10.1086/511989openalex-snapshot
The 1918 Influenza Pandemic: Insights for the 21st Century
inferredcites →https://doi.org/10.1086/591708openalex-snapshot
Predominant Role of Bacterial Pneumonia as a Cause of Death in Pandemic Influenza: Implications for Pandemic Influenza Preparedness
inferredcites →https://doi.org/10.1086/656333openalex-snapshot
Influenza Enhances Susceptibility to Natural Acquisition of and Disease due toStreptococcus pneumoniaein Ferrets
inferredcites →https://doi.org/10.1093/cid/cix941openalex-snapshot
Dynamics of Bacterial Colonization With Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis During Symptomatic and Asymptomatic Viral Upper Respiratory Tract Infection
inferredcites →https://doi.org/10.1093/infdis/jiu326openalex-snapshot
High Nasopharyngeal Pneumococcal Density, Increased by Viral Coinfection, Is Associated With Invasive Pneumococcal Pneumonia
inferredcites →https://doi.org/10.1093/infdis/jiw456openalex-snapshot
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy
inferredcites →https://doi.org/10.1096/fj.09-146779openalex-snapshot
Influenza A virus facilitates Streptococcus pneumoniae transmission and disease
inferredcites →https://doi.org/10.1097/00000441-197105000-00004openalex-snapshot
Pneumonia and Hong Kong influenza: a prospective study of the 1968-1969 epidemic
inferredcites →https://doi.org/10.1097/inf.0b013e3181f111a2openalex-snapshot
Association Between Nasopharyngeal Load of Streptococcus pneumoniae, Viral Coinfection, and Radiologically Confirmed Pneumonia in Vietnamese Children
inferredcites →https://doi.org/10.1099/jgv.0.000920openalex-snapshot
Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study
inferredcites →https://doi.org/10.1111/1462-2920.13713openalex-snapshot
One‐year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents
inferredcites →https://doi.org/10.1111/1469-0691.12054openalex-snapshot
Modulation of potential respiratory pathogens by pH1N1 viral infection
inferredcites →https://doi.org/10.1111/imm.12933openalex-snapshot
Impacts of microbiome metabolites on immune regulation and autoimmunity
inferredcites →https://doi.org/10.1111/j.1348-0421.1999.tb01226.xopenalex-snapshot
Facilitated Expansion of Pneumococcal Colonization from the Nose to the Lower Respiratory Tract in Mice Preinfected with Influenza Virus
inferredcites →https://doi.org/10.1111/j.1365-2567.2009.03179.xopenalex-snapshot
Toll‐like receptor‐induced innate immune responses in non‐parenchymal liver cells are cell type‐specific
inferredcites →https://doi.org/10.1111/j.1469-0691.2011.03480.xopenalex-snapshot
Streptococcus pneumoniae exposure is associated with human metapneumovirus seroconversion and increased susceptibility to in vitro HMPV infection
inferredcites →https://doi.org/10.1126/science.1241165openalex-snapshot
The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis
inferredcites →https://doi.org/10.1126/science.1256942openalex-snapshot
Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation
inferredcites →https://doi.org/10.1126/science.aam5336openalex-snapshot
The microbial metabolite desaminotyrosine protects from influenza through type I interferon
inferredcites →https://doi.org/10.1126/scitranslmed.3003783openalex-snapshot
Sinus Microbiome Diversity Depletion and Corynebacterium tuberculostearicum Enrichment Mediates Rhinosinusitis
inferredcites →https://doi.org/10.1128/.67.4.1992-2000.1999openalex-snapshot
Segmented Filamentous Bacteria Are Potent Stimuli of a Physiologically Normal State of the Murine Gut Mucosal Immune System
inferredcites →https://doi.org/10.1128/cdli.9.1.105-108.2002openalex-snapshot
Augmentation of Cellular Immunity and Reduction of Influenza Virus Titer in Aged Mice FedLactobacillus caseiStrain Shirota
inferredcites →https://doi.org/10.1128/cmr.00014-10openalex-snapshot
The Airway Epithelium: Soldier in the Fight against Respiratory Viruses
inferredcites →https://doi.org/10.1128/cmr.00058-05openalex-snapshot
Insights into the Interaction between Influenza Virus and Pneumococcus
inferredcites →https://doi.org/10.1128/iai.00037-15openalex-snapshot
Intestinal Microbiota of Mice Influences Resistance to Staphylococcus aureus Pneumonia
inferredcites →https://doi.org/10.1128/iai.00789-06openalex-snapshot
Both Influenza-Induced Neutrophil Dysfunction and Neutrophil-Independent Mechanisms Contribute to Increased Susceptibility to a SecondaryStreptococcus pneumoniaeInfection
inferredcites →https://doi.org/10.1128/iai.01856-14openalex-snapshot
Influenza A Virus Alters Pneumococcal Nasal Colonization and Middle Ear Infection Independently of Phase Variation
inferredcites →https://doi.org/10.1128/iai.02225-14openalex-snapshot
Dynamic Changes in the Streptococcus pneumoniae Transcriptome during Transition from Biofilm Formation to Invasive Disease upon Influenza A Virus Infection
inferredcites →https://doi.org/10.1128/iai.29.2.733-743.1980openalex-snapshot
Immunobiology of Germfree Mice Infected with Nocardia asteroides
inferredcites →https://doi.org/10.1128/iai.35.1.350-355.1982openalex-snapshot
Depression of monocyte and polymorphonuclear leukocyte oxidative metabolism and bactericidal capacity by influenza A virus
inferredcites →https://doi.org/10.1128/iai.58.9.2809-2814.1990openalex-snapshot
Pulmonary antibacterial defenses during mild and severe influenza virus infection
inferredcites →https://doi.org/10.1128/iai.61.1.303-306.1993openalex-snapshot
Apathogenic, intestinal, segmented, filamentous bacteria stimulate the mucosal immune system of mice
inferredcites →https://doi.org/10.1128/iai.63.4.1153-1157.1995openalex-snapshot
Effect of experimental influenza A virus infection on isolation of Streptococcus pneumoniae and other aerobic bacteria from the oropharynges of allergic and nonallergic adult subjects
inferredcites →https://doi.org/10.1128/iai.64.8.3280-3287.1996openalex-snapshot
Increased susceptibility to primary infection with Listeria monocytogenes in germfree mice may be due to lack of accumulation of L-selectin+ CD44+ T cells in sites of inflammation
inferredcites →https://doi.org/10.1128/iai.74.5.2562-2567.2006openalex-snapshot
Bacterial Sinusitis and Otitis Media following Influenza Virus Infection in Ferrets
inferredcites →https://doi.org/10.1128/jvi.50.2.287-292.1984openalex-snapshot
Influenza virus-induced immune complexes suppress alveolar macrophage phagocytosis
inferredcites →https://doi.org/10.1128/jvi.80.4.1629-1636.2006openalex-snapshot
Respiratory Viruses Augment the Adhesion of Bacterial Pathogens to Respiratory Epithelium in a Viral Species- and Cell Type-Dependent Manner
inferredcites →https://doi.org/10.1128/mbio.00037-15openalex-snapshot
Analysis of the Upper Respiratory Tract Microbiotas as the Source of the Lung and Gastric Microbiotas in Healthy Individuals
inferredcites →https://doi.org/10.1128/mbio.00129-10openalex-snapshot
Comparative Analyses of the Bacterial Microbiota of the Human Nostril and Oropharynx
inferredcites →https://doi.org/10.1128/mbio.00438-13openalex-snapshot
Interkingdom Signaling Induces Streptococcus pneumoniae Biofilm Dispersion and Transition from Asymptomatic Colonization to Disease
inferredcites →https://doi.org/10.1128/mbio.01040-13openalex-snapshot
Live Attenuated Influenza Vaccine Enhances Colonization of Streptococcus pneumoniae and Staphylococcus aureus in Mice
inferredcites →https://doi.org/10.1128/mbio.01235-16openalex-snapshot
Host Physiologic Changes Induced by Influenza A Virus Lead to Staphylococcus aureus Biofilm Dispersion and Transition from Asymptomatic Colonization to Invasive Disease
inferredcites →https://doi.org/10.1128/mbio.01939-15openalex-snapshot
Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection
inferredcites →https://doi.org/10.1128/mbio.02089-17openalex-snapshot
Streptococcus pneumoniae Modulates Staphylococcus aureus Biofilm Dispersion and the Transition from Colonization to Invasive Disease
inferredcites →https://doi.org/10.1128/mbio.02284-14openalex-snapshot
Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome
inferredcites →https://doi.org/10.1128/mbio.02287-16openalex-snapshot
Bacterial Topography of the Healthy Human Lower Respiratory Tract
inferredcites →https://doi.org/10.1136/bmj.2.5108.1305openalex-snapshot
Pneumonia Complicating Asian Influenza
inferredcites →https://doi.org/10.1136/gut.52.5.735openalex-snapshot
Expression of the cathelicidin LL-37 is modulated by short chain fatty acids in colonocytes: relevance of signalling pathways
inferredcites →https://doi.org/10.1136/gutjnl-2015-309728openalex-snapshot
The gut microbiota plays a protective role in the host defence against pneumococcal pneumonia
inferredcites →https://doi.org/10.1136/thoraxjnl-2014-205826openalex-snapshot
Respiratory microbiota: addressing clinical questions, informing clinical practice
inferredcites →https://doi.org/10.1146/annurev-immunol-020711-074937openalex-snapshot
The Microbiome in Infectious Disease and Inflammation
inferredcites →https://doi.org/10.1164/arrd.1982.126.5.778openalex-snapshot
Immune impairment of alveolar macrophage phagocytosis during influenza virus pneumonia.
inferredcites →https://doi.org/10.1164/rccm.201104-0655ocopenalex-snapshot
Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract
inferredcites →https://doi.org/10.1164/rccm.201210-1913ocopenalex-snapshot
Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers
inferredcites →https://doi.org/10.1164/rccm.201302-0341ocopenalex-snapshot
Outgrowth of the Bacterial Airway Microbiome after Rhinovirus Exacerbation of Chronic Obstructive Pulmonary Disease
inferredcites →https://doi.org/10.1164/rccm.201510-2000ocopenalex-snapshot
The Effects of Live Attenuated Influenza Vaccine on Nasopharyngeal Bacteria in Healthy 2 to 4 Year Olds: A Randomized Controlled Trial
inferredcites →https://doi.org/10.1164/rccm.201702-0357ocopenalex-snapshot
Acquisition and Transmission of Streptococcus pneumoniae Are Facilitated during Rhinovirus Infection in Families with Children
inferredcites →https://doi.org/10.1165/rcmb.2007-0417ocopenalex-snapshot
Influenza Virus Infection Decreases Tracheal Mucociliary Velocity and Clearance of Streptococcus pneumoniae
inferredcites →https://doi.org/10.1172/jci35412openalex-snapshot
Type I IFNs mediate development of postinfluenza bacterial pneumonia in mice
inferredcites →https://doi.org/10.1172/jci57762openalex-snapshot
Synergistic stimulation of type I interferons during influenza virus coinfection promotes Streptococcus pneumoniae colonization in mice
inferredcites →https://doi.org/10.1177/000348940010901106openalex-snapshot
Effect of Adenovirus Type 1 and Influenza a Virus on Streptococcus Pneumoniae Nasopharyngeal Colonization and Otitis Media in the Chinchilla
inferredcites →https://doi.org/10.1183/09031936.00205312openalex-snapshot
Ciliary dyskinesia is an early feature of respiratory syncytial virus infection
inferredcites →https://doi.org/10.1186/1471-2164-14-390openalex-snapshot
Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates
inferredcites →https://doi.org/10.1186/2049-2618-1-19openalex-snapshot
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
inferredcites →https://doi.org/10.1186/2049-2618-2-22openalex-snapshot
Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge
inferredcites →https://doi.org/10.1186/2049-2618-2-27openalex-snapshot
The nasal cavity microbiota of healthy adults
inferredcites →https://doi.org/10.1186/s12879-014-0583-3openalex-snapshot
Profiling bacterial community in upper respiratory tracts
inferredcites →https://doi.org/10.1186/s12879-015-1081-yopenalex-snapshot
Changes in microbiota during experimental human Rhinovirus infection
inferredcites →https://doi.org/10.1186/s40168-015-0133-2openalex-snapshot
The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
inferredcites →https://doi.org/10.1186/s40168-017-0386-zopenalex-snapshot
Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis
inferredcites →https://doi.org/10.1353/bhm.2002.0022openalex-snapshot
Updating the Accounts: Global Mortality of the 1918-1920 "Spanish" Influenza Pandemic
inferredcites →https://doi.org/10.1371/journal.pone.0008540openalex-snapshot
Streptococcus pneumoniae Coinfection Is Correlated with the Severity of H1N1 Pandemic Influenza
inferredcites →https://doi.org/10.1371/journal.pone.0010598openalex-snapshot
The Human Nasal Microbiota and Staphylococcus aureus Carriage
inferredcites →https://doi.org/10.1371/journal.pone.0013381openalex-snapshot
A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America
inferredcites →https://doi.org/10.1371/journal.pone.0017035openalex-snapshot
Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0041104openalex-snapshot
Pharyngeal Microflora Disruption by Antibiotics Promotes Airway Hyperresponsiveness after Respiratory Syncytial Virus Infection
inferredcites →https://doi.org/10.1371/journal.pone.0047711openalex-snapshot
Associations between Pathogens in the Upper Respiratory Tract of Young Children: Interplay between Viruses and Bacteria
inferredcites →https://doi.org/10.1371/journal.pone.0069559openalex-snapshot
Characterization of the Upper Respiratory Tract Microbiomes of Patients with Pandemic H1N1 Influenza
inferredcites →https://doi.org/10.1371/journal.pone.0162803openalex-snapshot
Taxa of the Nasal Microbiome Are Associated with Influenza-Specific IgA Response to Live Attenuated Influenza Vaccine
inferredcites →https://doi.org/10.1371/journal.pone.0170543openalex-snapshot
Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma
inferredcites →https://doi.org/10.1371/journal.ppat.1005572openalex-snapshot
Influenza Virus Affects Intestinal Microbiota and Secondary Salmonella Infection in the Gut through Type I Interferons
inferredcites →https://doi.org/10.1378/chest.10-1396openalex-snapshot
Community-Acquired Respiratory Coinfection in Critically Ill Patients With Pandemic 2009 Influenza A(H1N1) Virus
inferredcites →https://doi.org/10.1513/annalsats.201501-029ocopenalex-snapshot
Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography
inferredcites →https://doi.org/10.2353/ajpath.2010.100115openalex-snapshot
2009 Pandemic Influenza A (H1N1)
inferredcites →https://doi.org/10.3205/dgkh000249openalex-snapshot
Quantitative detection of Staphylococcus aureus, Streptococcus pneumoniae and Haemophilus influenzae in patients with new influenza A (H1N1)/2009 and influenza A/2010 virus infection
inferredcites →https://doi.org/10.3389/fimmu.2017.01164openalex-snapshot
Impact of Age, Caloric Restriction, and Influenza Infection on Mouse Gut Microbiome: An Exploratory Study of the Role of Age-Related Microbiome Changes on Influenza Responses
inferredcites →https://doi.org/10.3389/fimmu.2018.00182openalex-snapshot
Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota
inferredcites →https://doi.org/10.3389/fmicb.2017.01613openalex-snapshot
Respiratory Commensal Bacteria Corynebacterium pseudodiphtheriticum Improves Resistance of Infant Mice to Respiratory Syncytial Virus and Streptococcus pneumoniae Superinfection
inferredcites →https://doi.org/10.4049/jimmunol.1300014openalex-snapshot
Depletion of Alveolar Macrophages during Influenza Infection Facilitates Bacterial Superinfections
inferredcites →https://doi.org/10.4049/jimmunol.154.1.268openalex-snapshot
Alteration of pulmonary macrophage function by respiratory syncytial virus infection in vitro.
inferredcites →https://doi.org/10.4049/jimmunol.1600165openalex-snapshot
Diet-Derived Short Chain Fatty Acids Stimulate Intestinal Epithelial Cells To Induce Mucosal Tolerogenic Dendritic Cells
inferredcites →https://doi.org/10.4049/jimmunol.178.8.5209openalex-snapshot
Role of the Indigenous Microbiota in Maintaining the Virus-Specific CD8 Memory T Cells in the Lung of Mice Infected with Murine Cytomegalovirus
inferredcites →https://doi.org/10.5858/134.2.235openalex-snapshot
Pulmonary Pathologic Findings of Fatal 2009 Pandemic Influenza A/H1N1 Viral Infections
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/adfm.202112145openalex-snapshot
Inhalable MOF‐Derived Nanoparticles for Sonodynamic Therapy of Bacterial Pneumonia
inferred← citeshttps://doi.org/10.1002/advs.202102785openalex-snapshot
Characterization of the Human Oropharyngeal Microbiomes in SARS‐CoV‐2 Infection and Recovery Patients
inferred← citeshttps://doi.org/10.1002/iub.2356openalex-snapshot
Bacterial co‐infections with SARS‐CoV ‐2
inferred← citeshttps://doi.org/10.1002/jmv.27998openalex-snapshot
Dynamics of nasopharyngeal tract phageome and association with disease severity and age of patients during three waves of COVID‐19
inferred← citeshttps://doi.org/10.1002/jmv.28093openalex-snapshot
Coinfections in hospitalized patients with severe fever with thrombocytopenia syndrome: A retrospective study
inferred← citeshttps://doi.org/10.1002/jmv.28334openalex-snapshot
Application of nested multiplex polymerase chain reaction respiratory and pneumonia panels in children with severe community‐acquired pneumonia
inferred← citeshttps://doi.org/10.1002/jmv.29215openalex-snapshot
Development of a rapid, sensitive detection method for SARS‐CoV‐2 and influenza virus based on recombinase polymerase amplification combined with CRISPR‐Cas12a assay
inferred← citeshttps://doi.org/10.1002/ppul.25814openalex-snapshot
Tracheobronchitis in children with tracheostomy tubes: Overview of a challenging problem
inferred← citeshttps://doi.org/10.1002/ppul.26746openalex-snapshot
Respiratory culture growth and 3‐years lung health outcomes in children with bronchopulmonary dysplasia and tracheostomies
inferred← citeshttps://doi.org/10.1002/rmv.2109openalex-snapshot
Melatonin: Roles in influenza, Covid‐19, and other viral infections
inferred← citeshttps://doi.org/10.1002/rmv.70198openalex-snapshot
An Appraisal of the Potential Downstream Benefits of RSV Vaccination in Older Adults
inferred← citeshttps://doi.org/10.1007/978-3-030-85395-2_10openalex-snapshot
Eukaryotic Virus Interactions with Bacteria: Implications for Pathogenesis and Control
inferred← citeshttps://doi.org/10.1007/978-3-031-10992-8_18openalex-snapshot
Metal-Based Nanoparticles for Biofilm Treatment and Infection Control: From Basic Research to Clinical Translation
inferred← citeshttps://doi.org/10.1007/978-981-15-6529-8_9openalex-snapshot
Epidemiological Perspectives of Human Health Through Metagenomic Research
inferred← citeshttps://doi.org/10.1007/978-981-16-5105-2_19openalex-snapshot
Gut Microbiome in COVID-19: New Insights
inferred← citeshttps://doi.org/10.1007/978-981-16-5105-2_20openalex-snapshot
COVID-19 Pandemic and Mental Illness: Impact of Gut Microbiota
inferred← citeshttps://doi.org/10.1007/978-981-16-8957-4_9openalex-snapshot
Role of Brain–Gut–Microbiome Axis in Depression Comorbid with Asthma
inferred← citeshttps://doi.org/10.1007/978-981-97-3790-1_22openalex-snapshot
Microbiota-Based Therapeutics for COVID-19 and Sequelae
inferred← citeshttps://doi.org/10.1007/978-981-97-6948-3_2openalex-snapshot
Microbiome and Its Impact on Human Health: Microbiome in Various Body Organs and Its Association with Human Health and Disease
inferred← citeshttps://doi.org/10.1007/978-981-99-1463-0_12openalex-snapshot
Exploring the Pathoprofiles of SARS-COV-2 Infected Human Gut–Lungs Microbiome Crosstalks
inferred← citeshttps://doi.org/10.1007/978-981-99-5114-7_8openalex-snapshot
Influence of Intestinal Microbiomes on COVID Progression and Its Effects by Immunotherapeutic Modulation
inferred← citeshttps://doi.org/10.1007/s00018-021-03889-5openalex-snapshot
Host factors facilitating SARS‐CoV‐2 virus infection and replication in the lungs
inferred← citeshttps://doi.org/10.1007/s00203-023-03504-0openalex-snapshot
Effect of probiotics as an immune modulator for the management of COVID-19
inferred← citeshttps://doi.org/10.1007/s00284-026-05058-yopenalex-snapshot
Upper Respiratory Tract Resistome Exhibits SARS-CoV-2–associated Antimicrobial Resistance Patterns
inferred← citeshttps://doi.org/10.1007/s00394-021-02519-xopenalex-snapshot
Modulation of gut microbiota protects against viral respiratory tract infections: a systematic review of animal and clinical studies
inferred← citeshttps://doi.org/10.1007/s00508-021-01946-4openalex-snapshot
New insights and antimicrobial stewardship opportunities in viral pneumonia: five lung ultrasound cases
inferred← citeshttps://doi.org/10.1007/s00705-026-06531-6openalex-snapshot
Plant viruses and the microbiome: a complex network shaping plant health and disease resistance
inferred← citeshttps://doi.org/10.1007/s10096-025-05211-8openalex-snapshot
Prevalence and risk factors of concurrent bacteremia in children under 5 years of age hospitalized with viral lower respiratory tract infections
inferred← citeshttps://doi.org/10.1007/s10534-022-00427-zopenalex-snapshot
An overview on in vitro and in vivo antiviral activity of lactoferrin: its efficacy against SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1007/s10620-021-07158-0openalex-snapshot
Twelve Months with COVID-19: What Gastroenterologists Need to Know
inferred← citeshttps://doi.org/10.1007/s10735-024-10225-1openalex-snapshot
A metagenomic next-generation sequencing (mNGS)-based analysis of bronchoalveolar lavage samples in patients with an acute exacerbation of chronic obstructive pulmonary disease
inferred← citeshttps://doi.org/10.1007/s11046-026-01096-zopenalex-snapshot
SARS‑CoV‑2 Associated Shifts in the Upper Respiratory Tract Mycobiome in Non-hospitalized Cases
inferred← citeshttps://doi.org/10.1007/s11596-021-2475-2openalex-snapshot
Efficacy and Safety of Washed Microbiota Transplantation to Treat Patients with Mild-to-Severe COVID-19 and Suspected of Having Gut Microbiota Dysbiosis: Study Protocol for a Randomized Controlled Trial
inferred← citeshttps://doi.org/10.1007/s11739-021-02824-7openalex-snapshot
Bacterial infections in patients hospitalized with COVID-19
inferred← citeshttps://doi.org/10.1007/s11739-024-03631-6openalex-snapshot
Bidirectional association between pneumonia and intestinal infection: an analysis of the MIMIC-IV database
inferred← citeshttps://doi.org/10.1007/s12016-025-09120-8openalex-snapshot
Potential Mechanisms and Hypotheses for Pathogenic Microorganisms Triggering Kawasaki Disease
inferred← citeshttps://doi.org/10.1007/s12250-021-00391-xopenalex-snapshot
Enriched Opportunistic Pathogens Revealed by Metagenomic Sequencing Hint Potential Linkages between Pharyngeal Microbiota and COVID-19
inferred← citeshttps://doi.org/10.1007/s12602-021-09748-wopenalex-snapshot
Systematic Network and Meta-analysis on the Antiviral Mechanisms of Probiotics: A Preventive and Treatment Strategy to Mitigate SARS-CoV-2 Infection
inferred← citeshttps://doi.org/10.1007/s12602-024-10301-8openalex-snapshot
Oral Administration of Limosilactobacillus reuteri KBL346 Ameliorates Influenza Virus A/PR8 Infection in Mouse
inferred← citeshttps://doi.org/10.1007/s15010-023-02063-2openalex-snapshot
Community-acquired and hospital-acquired bacterial co-infections in patients hospitalized with Covid-19 or influenza: a retrospective cohort study
inferred← citeshttps://doi.org/10.1007/s42600-020-00113-4openalex-snapshot
Role of gut-lung microbiome crosstalk in COVID-19
inferred← citeshttps://doi.org/10.1007/s43440-022-00415-7openalex-snapshot
Short-chain fatty acids–microbiota crosstalk in the coronavirus disease (COVID-19)
inferred← citeshttps://doi.org/10.1007/s44307-025-00064-wopenalex-snapshot
Pathogenic profiles and lower respiratory tract microbiota in severe pneumonia patients using metagenomic next-generation sequencing
inferred← citeshttps://doi.org/10.1016/b978-0-12-818619-0.00048-4openalex-snapshot
Viral–bacterial interactions within hosts
inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00048-6openalex-snapshot
COVID-19 and the Microbiome: The Gut-Lung Connection
inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00072-3openalex-snapshot
Gut Microbiota Dysbiosis and COVID-19: Possible Links
inferred← citeshttps://doi.org/10.1016/b978-0-323-90769-9.00037-2openalex-snapshot
Gut-lung cross talk in COVID-19 pathology and fatality rate
inferred← citeshttps://doi.org/10.1016/b978-0-323-91794-0.00022-6openalex-snapshot
Systems biology in COVID-19
inferred← citeshttps://doi.org/10.1016/b978-0-443-19122-0.00012-1openalex-snapshot
Viral-bacterial interactions in diseases
inferred← citeshttps://doi.org/10.1016/b978-0-443-36692-5.00015-5openalex-snapshot
Introduction to nanodynamic therapies for cancer and bacterial infections
inferred← citeshttps://doi.org/10.1016/bs.aivir.2026.06.001openalex-snapshot
Respiratory syncytial virus and Streptococcus pneumoniae: Partners in crime
inferred← citeshttps://doi.org/10.1016/j.abb.2025.110314openalex-snapshot
Acer tegmeutosum Maxim extract alleviates acute alcohol-induced liver disease and regulates gut microbiota dysbiosis in mice
inferred← citeshttps://doi.org/10.1016/j.actbio.2023.11.009openalex-snapshot
Heterogeneous Cu2O-SnO2 doped polydopamine fenton-like nanoenzymes for synergetic photothermal-chemodynamic antibacterial application
inferred← citeshttps://doi.org/10.1016/j.addr.2023.115008openalex-snapshot
The role of mucosal barriers in disease progression and transmission
inferred← citeshttps://doi.org/10.1016/j.ajog.2020.03.021openalex-snapshot
Coronavirus disease 2019 (COVID-19) pandemic and pregnancy
inferred← citeshttps://doi.org/10.1016/j.anaerobe.2021.102342openalex-snapshot
Unusual case of necrotizing pneumonia caused by Fusobacterium nucleatum complicating influenza a virus infection
inferred← citeshttps://doi.org/10.1016/j.arcmed.2021.03.002openalex-snapshot
Probiotics in Prevention and Treatment of COVID-19: Current Perspective and Future Prospects
inferred← citeshttps://doi.org/10.1016/j.arcped.2019.11.006openalex-snapshot
Association between multiple respiratory viral infections and pediatric intensive care unit admission among infants with bronchiolitis
inferred← citeshttps://doi.org/10.1016/j.arr.2020.101235openalex-snapshot
Dysbiosis, malnutrition and enhanced gut-lung axis contribute to age-related respiratory diseases
inferred← citeshttps://doi.org/10.1016/j.bbi.2021.05.004openalex-snapshot
Moderately pathogenic maternal influenza A virus infection disrupts placental integrity but spares the fetal brain
inferred← citeshttps://doi.org/10.1016/j.chest.2022.01.045openalex-snapshot
Carriage and Transmission of Macrolide Resistance Genes in Patients With Chronic Respiratory Conditions and Their Close Contacts
inferred← citeshttps://doi.org/10.1016/j.clim.2020.108409openalex-snapshot
Individual risk management strategy and potential therapeutic options for the COVID-19 pandemic
inferred← citeshttps://doi.org/10.1016/j.cmi.2020.06.019openalex-snapshot
Diagnostic strategies for SARS-CoV-2 infection and interpretation of microbiological results
inferred← citeshttps://doi.org/10.1016/j.cyto.2025.156868openalex-snapshot
Ficolin A and ficolin B aggravate poly(I:C) secondary LPS stimulation-induced acute lung injury by modulating alveolar and interstitial macrophages
inferred← citeshttps://doi.org/10.1016/j.cytogfr.2022.01.007openalex-snapshot
Roles of the gut microbiota in severe SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2023.116134openalex-snapshot
Predictive value of methicillin-resistant staphylococcus aureus nasal swab in patients with COVID-19 pneumonia and secondary bacterial pneumonia
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2024.116479openalex-snapshot
Comparison of microbiological and molecular diagnosis for identification of respiratory secondary infections in COVID-19 patients and their antimicrobial resistance patterns
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2026.117663openalex-snapshot
Targeted metagenomic sequencing for respiratory pathogen detection in hospitalized SARI patients in Indonesia: Comparison with routine RT-qPCR
inferred← citeshttps://doi.org/10.1016/j.eng.2020.05.013openalex-snapshot
Clinical Significance of the Correlation between Changes in the Major Intestinal Bacteria Species and COVID-19 Severity
inferred← citeshttps://doi.org/10.1016/j.envres.2023.116063openalex-snapshot
Childhood lower respiratory tract infections linked to residential airborne bacterial and fungal microbiota
inferred← citeshttps://doi.org/10.1016/j.heliyon.2022.e09488openalex-snapshot
A multicompartment mathematical model based on host immunity for dissecting COVID-19 heterogeneity
inferred← citeshttps://doi.org/10.1016/j.humic.2020.100073openalex-snapshot
Lung microbiome and coronavirus disease 2019 (COVID-19): Possible link and implications
inferred← citeshttps://doi.org/10.1016/j.ijantimicag.2024.107308openalex-snapshot
Host immunomodulation strategies to combat pandemic-associated antimicrobial-resistant secondary bacterial infections
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.131289openalex-snapshot
Preparation and characterization of curdlan-chitosan conjugate nanoparticles as mucosal adjuvants for intranasal influenza H1N1 subunit vaccine
inferred← citeshttps://doi.org/10.1016/j.ijid.2020.12.087openalex-snapshot
Antibiotics and antimicrobial resistance in the COVID-19 era: Perspective from resource-limited settings
inferred← citeshttps://doi.org/10.1016/j.ijid.2021.02.071openalex-snapshot
SARS-CoV-2 and immune-microbiome interactions: Lessons from respiratory viral infections
inferred← citeshttps://doi.org/10.1016/j.ijporl.2025.112364openalex-snapshot
Increased incidence of intracranial complications following pediatric sinogenic and otogenic infections in the post-COVID-19 Era: A systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1016/j.imu.2023.101239openalex-snapshot
Evaluation of the gut microbiome associated with COVID-19
inferred← citeshttps://doi.org/10.1016/j.intimp.2021.107713openalex-snapshot
Research progress of opioid growth factor in immune-related diseases and cancer diseases
inferred← citeshttps://doi.org/10.1016/j.intimp.2021.108516openalex-snapshot
Neutrophil Extracellular Traps (NETs) and Covid-19: A new frontiers for therapeutic modality
inferred← citeshttps://doi.org/10.1016/j.intimp.2024.113607openalex-snapshot
Gegen Qinlian Decoction improves H1N1-induced viral pneumonia by modulating the “gut microbiota-metabolomics-immune/inflammation” axis
inferred← citeshttps://doi.org/10.1016/j.intimp.2026.116191openalex-snapshot
Erucic acid attenuates post-influenza secondary Staphylococcus aureus infection by modulating VCAM-1 and CEACAM-1 expression and gut dysbiosis
inferred← citeshttps://doi.org/10.1016/j.jaci.2023.09.022openalex-snapshot
The virome in allergy and asthma: A nascent, ineffable player
inferred← citeshttps://doi.org/10.1016/j.jbc.2025.108166openalex-snapshot
Porphyromonas gingivalis gingipain potentially activates influenza A virus infectivity through proteolytic cleavage of viral hemagglutinin
inferred← citeshttps://doi.org/10.1016/j.jdsr.2023.12.006openalex-snapshot
Respiratory tract barrier dysfunction in viral-bacterial co-infection cases
inferred← citeshttps://doi.org/10.1016/j.jep.2022.115977openalex-snapshot
Mechanism of Jinzhen Oral Liquid against influenza-induced lung injury based on metabonomics and gut microbiome
inferred← citeshttps://doi.org/10.1016/j.jep.2024.118521openalex-snapshot
Sangju Cold Granule exerts anti-viral and anti-inflammatory activities against influenza A virus in vitro and in vivo
inferred← citeshttps://doi.org/10.1016/j.jep.2025.120458openalex-snapshot
Effects of Modified Xuanbai Chengqi Decoction against secondary Streptococcus pneumoniae infection following influenza virus infection: A multi-omics analysis
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2025.139277openalex-snapshot
Respiratory exposure to 6PPD-quinone aggravates Klebsiella pneumoniae pneumonia by impairing the innate immune function of alveolar macrophages
inferred← citeshttps://doi.org/10.1016/j.jinf.2021.12.030openalex-snapshot
Nasopharyngeal Microbiota as an early severity biomarker in COVID-19 hospitalised patients
inferred← citeshttps://doi.org/10.1016/j.jiph.2020.12.025openalex-snapshot
The find of COVID-19 vaccine: Challenges and opportunities
inferred← citeshttps://doi.org/10.1016/j.jiph.2023.01.004openalex-snapshot
A two-year retrospective study of multidrug-resistant Acinetobacter baumannii respiratory infections in critically Ill patients: Clinical and microbiological findings
inferred← citeshttps://doi.org/10.1016/j.lfs.2020.118450openalex-snapshot
Short-term high-dose gavage of hydroxychloroquine changes gut microbiota but not the intestinal integrity and immunological responses in mice
inferred← citeshttps://doi.org/10.1016/j.medmic.2020.100024openalex-snapshot
Washed microbiota transplantation in patients with respiratory spreading diseases: Practice recommendations
inferred← citeshttps://doi.org/10.1016/j.mib.2019.09.012openalex-snapshot
The internationalization of human microbiome research
inferred← citeshttps://doi.org/10.1016/j.micinf.2021.104880openalex-snapshot
Nasopharyngeal microbiome reveals the prevalence of opportunistic pathogens in SARS-CoV-2 infected individuals and their association with host types
inferred← citeshttps://doi.org/10.1016/j.phymed.2026.157891openalex-snapshot
Microbiota-dependent mechanism of Jianpiyifei II in treating experimental virus-induced acute exacerbation of chronic obstructive pulmonary disease
inferred← citeshttps://doi.org/10.1016/j.pmatsci.2025.101532openalex-snapshot
Smart responsive materials for antibacterial therapy: Progress, opportunities, and challenges
inferred← citeshttps://doi.org/10.1016/j.prmcm.2024.100362openalex-snapshot
Therapeutic potential of Lonicerae japonicae flos against emerging respiratory viral infections
inferred← citeshttps://doi.org/10.1016/j.rmed.2025.108552openalex-snapshot
Long term respiratory outcomes in preterm infants with (or without) bronchopulmonary dysplasia: what is essential to know to improve their quality of life
inferred← citeshttps://doi.org/10.1016/j.sajb.2025.03.039openalex-snapshot
Ethnopharmacological evidence and exploration of the phytochemical profile by GC-MS of bioactive compounds extracted from Sterculia setigera
inferred← citeshttps://doi.org/10.1016/j.snb.2022.131467openalex-snapshot
A novel bacterial imprinted polymers- electrochemiluminescent sensor for Lactobacillus salivarius detection
inferred← citeshttps://doi.org/10.1016/j.tim.2021.04.011openalex-snapshot
Cross-correlation of virome–bacteriome–host–metabolome to study respiratory health
inferred← citeshttps://doi.org/10.1016/j.ultsonch.2025.107270openalex-snapshot
Ultrasound-mediated nanomaterials for the treatment of inflammatory diseases
inferred← citeshttps://doi.org/10.1016/j.virusres.2020.198103openalex-snapshot
Immunological co-ordination between gut and lungs in SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1016/j.virusres.2020.198175openalex-snapshot
Zoonotic evolution and implications of microbiome in viral transmission and infection
inferred← citeshttps://doi.org/10.1016/j.waojou.2021.100607openalex-snapshot
Association of infant antibiotic exposure and risk of childhood asthma: A meta-analysis
inferred← citeshttps://doi.org/10.1016/s1773-035x(20)30313-0openalex-snapshot
Diagnostic biologique de l’infection à Sars-CoV-2 : stratégies et interprétation des résultats
inferred← citeshttps://doi.org/10.1016/s2666-7568(20)30034-9openalex-snapshot
Associations of faecal microbiota with influenza-like illness in participants aged 60 years or older: an observational study
inferred← citeshttps://doi.org/10.1017/ash.2023.455openalex-snapshot
Association of COVID-19 coinfection with increased mortality among patients with Pseudomonas aeruginosa bloodstream infection in the Veterans Health Administration system
inferred← citeshttps://doi.org/10.1017/s0007114520003980openalex-snapshot
Mechanisms linking the human gut microbiome to prophylactic and treatment strategies for COVID-19
inferred← citeshttps://doi.org/10.1021/acs.chemrev.2c00431openalex-snapshot
Microbiome and Human Health: Current Understanding, Engineering, and Enabling Technologies
inferred← citeshttps://doi.org/10.1021/acsbiomaterials.5c00425openalex-snapshot
Mechanisms for Physicochemical Interaction between Mucus and Respiratory Viruses
inferred← citeshttps://doi.org/10.1021/acschemneuro.0c00671openalex-snapshot
Viral Infection-Induced Gut Dysbiosis, Neuroinflammation, and α-Synuclein Aggregation: Updates and Perspectives on COVID-19 and Neurodegenerative Disorders
inferred← citeshttps://doi.org/10.1038/s41385-020-00361-8openalex-snapshot
The lung–gut axis during viral respiratory infections: the impact of gut dysbiosis on secondary disease outcomes
inferred← citeshttps://doi.org/10.1038/s41385-022-00490-2openalex-snapshot
Infection with the enteric pathogen C. rodentium promotes islet-specific autoimmunity by activating a lymphatic route from the gut to pancreatic lymph node
inferred← citeshttps://doi.org/10.1038/s41390-019-0742-8openalex-snapshot
In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response
inferred← citeshttps://doi.org/10.1038/s41392-026-02853-8openalex-snapshot
Mechanisms and therapeutic strategies of asthma: from bench to bedside
inferred← citeshttps://doi.org/10.1038/s41401-021-00651-2openalex-snapshot
Pharmacokinetics-based identification of pseudoaldosterogenic compounds originating from Glycyrrhiza uralensis roots (Gancao) after dosing LianhuaQingwen capsule
inferred← citeshttps://doi.org/10.1038/s41467-022-31074-0openalex-snapshot
Airway Prevotella promote TLR2-dependent neutrophil activation and rapid clearance of Streptococcus pneumoniae from the lung
inferred← citeshttps://doi.org/10.1038/s41522-025-00859-8openalex-snapshot
Multi-omics analysis of host airway responses in pediatric Mycoplasma pneumoniae pneumonia reveals potential mechanisms of disease exacerbation caused by co-infection
inferred← citeshttps://doi.org/10.1038/s41569-022-00737-2openalex-snapshot
Gut-derived low-grade endotoxaemia, atherothrombosis and cardiovascular disease
inferred← citeshttps://doi.org/10.1038/s41575-021-00416-6openalex-snapshot
Potential intestinal infection and faecal–oral transmission of SARS-CoV-2
inferred← citeshttps://doi.org/10.1038/s41598-020-79630-2openalex-snapshot
Addition of probiotics to antibiotics improves the clinical course of pneumonia in young people without comorbidities: a randomized controlled trial
inferred← citeshttps://doi.org/10.1038/s41598-021-85750-0openalex-snapshot
Functional profiling of COVID-19 respiratory tract microbiomes
inferred← citeshttps://doi.org/10.1038/s41598-023-27906-8openalex-snapshot
White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon
inferred← citeshttps://doi.org/10.1038/s41598-023-45007-4openalex-snapshot
Lung microbiome on admission in critically ill patients with acute bacterial and viral pneumonia
inferred← citeshttps://doi.org/10.1038/s41598-024-82516-2openalex-snapshot
Protective effect of interferon type I on barrier function of human airway epithelium during rhinovirus infections in vitro
inferred← citeshttps://doi.org/10.1038/s41598-025-01659-yopenalex-snapshot
Pneumococcal density and respiratory co-detection in severe pediatric pneumonia in Laos
inferred← citeshttps://doi.org/10.1038/s41598-025-01764-yopenalex-snapshot
Nasopharyngeal microbiome composition by SARS-CoV-2 presence and severity
inferred← citeshttps://doi.org/10.1038/s41598-025-33917-4openalex-snapshot
Metagenomic sequencing identifies potential respiratory pathogens in PCR-negative subset of surveillance samples
inferred← citeshttps://doi.org/10.1038/s41598-025-85806-5openalex-snapshot
Assessment of upper respiratory and gut bacterial microbiomes during COVID-19 infection in adults: potential aerodigestive transmission
inferred← citeshttps://doi.org/10.1038/s41598-025-95026-6openalex-snapshot
Cationic starch styrene acrylic antibacterial emulsion based on subject object recognition of β-cyclodextrin for paper surface modification
inferred← citeshttps://doi.org/10.1042/bcj20200426openalex-snapshot
Gut microbiome a promising target for management of respiratory diseases
inferred← citeshttps://doi.org/10.1053/j.gastro.2020.05.048openalex-snapshot
Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization
inferred← citeshttps://doi.org/10.1055/s-0043-1776391openalex-snapshot
Respiratory Syncytial Virus and Parainfluenza Virus: Characterizing Distinct Clinical Profiles and How They Shift with Bacterial Coinfection
inferred← citeshttps://doi.org/10.1080/02648725.2022.2122297openalex-snapshot
Bacterial co-infections and antimicrobial resistance associated with the Coronavirus Disease 2019 infection
inferred← citeshttps://doi.org/10.1080/14737159.2022.2018302openalex-snapshot
Rapid diagnostic tests in the management of pneumonia
inferred← citeshttps://doi.org/10.1080/14767058.2020.1774875openalex-snapshot
Effectiveness and safety of available treatments for COVID-19 during pregnancy: a critical review
inferred← citeshttps://doi.org/10.1080/16549716.2020.1815272openalex-snapshot
Prevalence of multidrug-, extensive drug-, and pandrug-resistant commensal Escherichia coli isolated from healthy humans in community settings in low- and middle-income countries: a systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1080/17474124.2021.1991311openalex-snapshot
Cross-talk between immune system and microbiota in COVID-19
inferred← citeshttps://doi.org/10.1080/17476348.2026.2629003openalex-snapshot
The double threat: bacterial and fungal co-/superinfection in viral pneumonia
inferred← citeshttps://doi.org/10.1080/19490976.2021.1900997openalex-snapshot
Probiotics reduce self-reported symptoms of upper respiratory tract infection in overweight and obese adults: should we be considering probiotics during viral pandemics?
inferred← citeshttps://doi.org/10.1080/19490976.2023.2201157openalex-snapshot
Gut microbiota in COVID-19: new insights from inside
inferred← citeshttps://doi.org/10.1080/19490976.2026.2689168openalex-snapshot
Cross-kingdom microbiome interactions along the gut–lung axis: immune–microecological coordination, shared mechanisms, and disease-context dependence in respiratory disorders
inferred← citeshttps://doi.org/10.1080/20002297.2025.2569523openalex-snapshot
Dysbiosis of the oropharyngeal microbiota in COVID-19: distinct profiles in patients with severe respiratory symptoms
inferred← citeshttps://doi.org/10.1080/21655979.2021.1997563openalex-snapshot
Characteristics of the lung microbiota in lower respiratory tract infections with and without history of pneumonia
inferred← citeshttps://doi.org/10.1080/22221751.2019.1693247openalex-snapshot
The dynamics and interactions of respiratory pathogen carriage among French pilgrims during the 2018 Hajj
inferred← citeshttps://doi.org/10.1080/22221751.2023.2165970openalex-snapshot
The nasopharyngeal microbiome in COVID-19
inferred← citeshttps://doi.org/10.1080/2314808x.2020.1843119openalex-snapshot
COVID-19;-The origin, genetics,and management of the infection of mothers and babies
inferred← citeshttps://doi.org/10.1088/1752-7163/ab9c32openalex-snapshot
Breath analysis for detection of viral infection, the current position of the field
inferred← citeshttps://doi.org/10.1088/1752-7163/ac1a61openalex-snapshot
Exhaled breath biomarkers of influenza infection and influenza vaccination
inferred← citeshttps://doi.org/10.1089/adt.2020.1014openalex-snapshot
Cefaclor Monohydrate-Loaded Colon-Targeted Nanoparticles for Use in COVID-19 Dependent Coinfections and Intestinal Symptoms: Formulation, Characterization, Release Kinetics, and Antimicrobial Activity
inferred← citeshttps://doi.org/10.1093/bfgp/elac021openalex-snapshot
Integrative genomics important to understand host–pathogen interactions
inferred← citeshttps://doi.org/10.1093/cid/ciaa1053openalex-snapshot
Individual-level Association of Influenza Infection With Subsequent Pneumonia: A Case-control and Prospective Cohort Study
inferred← citeshttps://doi.org/10.1093/cid/ciaa203openalex-snapshot
Genomic Diversity of Severe Acute Respiratory Syndrome–Coronavirus 2 in Patients With Coronavirus Disease 2019
inferred← citeshttps://doi.org/10.1093/cid/ciaa663openalex-snapshot
Metatranscriptomic Characterization of Coronavirus Disease 2019 Identified a Host Transcriptional Classifier Associated With Immune Signaling
inferred← citeshttps://doi.org/10.1093/cid/ciab568openalex-snapshot
Bacterial and Viral Respiratory Tract Microbiota and Host Characteristics in Adults With Lower Respiratory Tract Infections: A Case-Control Study
inferred← citeshttps://doi.org/10.1093/femspd/ftaa046openalex-snapshot
The past, present and future of RNA respiratory viruses: influenza and coronaviruses
inferred← citeshttps://doi.org/10.1093/infdis/jiad028openalex-snapshot
Changes in the Incidence of Invasive Bacterial Disease During the COVID-19 Pandemic in the United States, 2014–2020
inferred← citeshttps://doi.org/10.1093/jambio/lxag203openalex-snapshot
Advancing the bacterial hypothesis of sudden infant death syndrome and sudden unexplained death in childhood: evidence that prone sleeping position elevates bacterial titres in the anterior nares
inferred← citeshttps://doi.org/10.1093/jpids/piab044openalex-snapshot
Associations Between Salivary Bacteriome Diversity and Salivary Human Herpesvirus Detection in Early Childhood: A Prospective Cohort Study
inferred← citeshttps://doi.org/10.1097/aci.0000000000000738openalex-snapshot
The microbiome in atopic patients and potential modifications in the context of the severe acute respiratory syndrome coronavirus 2 pandemic
inferred← citeshttps://doi.org/10.1097/cce.0000000000000492openalex-snapshot
Pharmacotherapy in Coronavirus Disease 2019 and Risk of Secondary Infections: A Single-Center Case Series and Narrative Review
inferred← citeshttps://doi.org/10.1097/hm9.0000000000000038openalex-snapshot
Herbal medicine in the treatment of COVID-19 based on the gut–lung axis
inferred← citeshttps://doi.org/10.1097/inf.0000000000003414openalex-snapshot
Differential Impact of Nonpharmaceutical Interventions on the Epidemiology of Invasive Bacterial Infections in Children During the Coronavirus Disease 2019 Pandemic
inferred← citeshttps://doi.org/10.1097/inf.0000000000004738openalex-snapshot
Viral Codetection and Clinical Outcomes of Infants Hospitalized With Bronchiolitis: A Multicenter Cohort Study
inferred← citeshttps://doi.org/10.1097/ipc.0000000000001412openalex-snapshot
Severe Clinical Outcomes Due to Human Adenoviral Respiratory Infections in Hospitalized Immunocompetent Adults
inferred← citeshttps://doi.org/10.1097/md.0000000000020690openalex-snapshot
Effect of Panax ginseng on preventing acute respiratory tract infection
inferred← citeshttps://doi.org/10.1097/md.0000000000022273openalex-snapshot
The impact of COVID-19 on intestinal flora
inferred← citeshttps://doi.org/10.1097/md.0000000000040860openalex-snapshot
Analysis of lung microbiota in pediatric pneumonia patients using BALF metagenomic next-generation sequencing: A retrospective observational study
inferred← citeshttps://doi.org/10.1097/mrm.0000000000000423openalex-snapshot
Impact of COVID-19 on gut–lung microbiota a mini review
inferred← citeshttps://doi.org/10.1097/ppo.0000000000000484openalex-snapshot
Immunotherapy Use in Patients With Lung Cancer and Comorbidities
inferred← citeshttps://doi.org/10.1097/qco.0000000000000736openalex-snapshot
Predisposition of COVID-19 patients to secondary infections: set in stone or subject to change?
inferred← citeshttps://doi.org/10.1097/xce.0000000000000242openalex-snapshot
Salivary markers and coronavirus disease 2019: insights from cross-talk between the oral microbiome and pulmonary and systemic low-grade inflammation and implications for vascular complications
inferred← citeshttps://doi.org/10.1099/jmm.0.001996openalex-snapshot
Patients in hospital with confirmed bacterial airway infection are significantly more likely to have a respiratory virus co-infection
inferred← citeshttps://doi.org/10.1099/mgen.0.000661openalex-snapshot
Differential nasopharyngeal microbiota composition in children according to respiratory health status
inferred← citeshttps://doi.org/10.1099/mgen.0.000957openalex-snapshot
Upper respiratory tract microbiota dynamics following COVID-19 in adults
inferred← citeshttps://doi.org/10.1101/2021.01.05.20249061openalex-snapshot
THE INTESTINAL AND ORAL MICROBIOMES ARE ROBUST PREDICTORS OF COVID-19 SEVERITY THE MAIN PREDICTOR OF COVID-19-RELATED FATALITY
inferred← citeshttps://doi.org/10.1101/2021.04.09.439260openalex-snapshot
Nosocomial Pseudomonas aeruginosa regulates alginate biosynthesis and Type VI secretion system during adaptive and convergent evolution for coinfection in critically ill COVID-19 patients
inferred← citeshttps://doi.org/10.1101/2021.06.08.447491openalex-snapshot
ROS/RNS balancing, aerobic fermentation regulation and cell cycle control – a complex early trait (‘CoV-MAC-TED’) for combating SARS-CoV-2-induced cell reprogramming
inferred← citeshttps://doi.org/10.1101/2024.11.14.24317312openalex-snapshot
Impact of SARS-CoV-2 Infection on Antimicrobial Resistance Gene Profiles in the Upper Respiratory Tract: A Cross-Sectional Study
inferred← citeshttps://doi.org/10.1101/mcs.a006031openalex-snapshot
The gut microbiome: a missing link in understanding the gastrointestinal manifestations of COVID-19?
inferred← citeshttps://doi.org/10.1111/1348-0421.12881openalex-snapshot
The changes of respiratory microbiome between mild and severe asthma patients
inferred← citeshttps://doi.org/10.1111/all.15243openalex-snapshot
House dust mite sensitization and exposure affects bronchial epithelial anti‐microbial response to viral stimuli in patients with asthma
inferred← citeshttps://doi.org/10.1111/apa.16869openalex-snapshot
Does attendance in outdoor kindergartens reduce the use of antibiotics in children?
inferred← citeshttps://doi.org/10.1111/febs.16363openalex-snapshot
Nonrespiratory sites of influenza‐associated disease: mechanisms and experimental systems for continued study
inferred← citeshttps://doi.org/10.1111/imm.13139openalex-snapshot
The impact of lung microbiota dysbiosis on inflammation
inferred← citeshttps://doi.org/10.1111/imr.13125openalex-snapshot
At the crux of maternal immune activation: Viruses, microglia, microbes, and IL‐17A
inferred← citeshttps://doi.org/10.1111/lam.13798openalex-snapshot
Meta-analysis of the microbial biomarkers in the gut–lung crosstalk in COVID-19, community-acquired pneumonia and Clostridium difficile infections
inferred← citeshttps://doi.org/10.1128/cmr.00186-23openalex-snapshot
How long do bacteria, fungi, protozoa, and viruses retain their replication capacity on inanimate surfaces? A systematic review examining environmental resilience versus healthcare-associated infection risk by “fomite-borne risk assessment”
inferred← citeshttps://doi.org/10.1128/jb.00295-22openalex-snapshot
Microbial and Immune Regulation of the Gut-Lung Axis during Viral-Bacterial Coinfection
inferred← citeshttps://doi.org/10.1128/jb.00454-20openalex-snapshot
Gut Microbiota: the Emerging Link to Lung Homeostasis and Disease
inferred← citeshttps://doi.org/10.1128/jvi.01225-20openalex-snapshot
A Prime/Boost Vaccine Regimen Alters the Rectal Microbiome and Impacts Immune Responses and Viremia Control Post-Simian Immunodeficiency Virus Infection in Male and Female Rhesus Macaques
inferred← citeshttps://doi.org/10.1128/jvi.01774-25openalex-snapshot
Disease modulation by TIV vaccination during secondary pneumococcal infections in influenza-infected mice
inferred← citeshttps://doi.org/10.1128/mbio.02496-21openalex-snapshot
The Interplay between the Host Microbiome and Pathogenic Viral Infections
inferred← citeshttps://doi.org/10.1128/mbio.03236-19openalex-snapshot
Respiratory Viral Infection Alters the Gut Microbiota by Inducing Inappetence
inferred← citeshttps://doi.org/10.1128/msystems.00104-21openalex-snapshot
Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds
inferred← citeshttps://doi.org/10.1128/spectrum.00197-21openalex-snapshot
Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights
showing the first 200 of 495 · page through all 495
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.