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Genomic Description of ‘Candidatus Abyssubacteria,’ a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/0-387-30742-7_22openalex-snapshot
Dissimilatory Sulfate- and Sulfur-Reducing Prokaryotes
inferredcites →https://doi.org/10.1007/s10482-017-0844-4openalex-snapshot
A large-scale evaluation of algorithms to calculate average nucleotide identity
inferredcites →https://doi.org/10.1016/j.bbapap.2008.08.012openalex-snapshot
Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
inferredcites →https://doi.org/10.1016/j.cub.2015.01.014openalex-snapshot
Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
inferredcites →https://doi.org/10.1016/j.margeo.2014.02.009openalex-snapshot
A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions
inferredcites →https://doi.org/10.1016/j.mib.2015.06.008openalex-snapshot
Uncultivated thermophiles: current status and spotlight on ‘Aigarchaeota’
inferredcites →https://doi.org/10.1038/ismej.2009.2openalex-snapshot
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
inferredcites →https://doi.org/10.1038/ismej.2011.189openalex-snapshot
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
inferredcites →https://doi.org/10.1038/ismej.2014.256openalex-snapshot
Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor
inferredcites →https://doi.org/10.1038/ismej.2014.76openalex-snapshot
Estimating coverage in metagenomic data sets and why it matters
inferredcites →https://doi.org/10.1038/ismej.2017.113openalex-snapshot
Uncultivated microbes in need of their own taxonomy
inferredcites →https://doi.org/10.1038/ismej.2017.94openalex-snapshot
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community
inferredcites →https://doi.org/10.1038/nature12352openalex-snapshot
Insights into the phylogeny and coding potential of microbial dark matter
inferredcites →https://doi.org/10.1038/nature14486openalex-snapshot
Unusual biology across a group comprising more than 15% of domain Bacteria
inferredcites →https://doi.org/10.1038/nbt.3893openalex-snapshot
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
inferredcites →https://doi.org/10.1038/ncomms10476openalex-snapshot
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
inferredcites →https://doi.org/10.1038/ncomms11054openalex-snapshot
Correction: Corrigendum: Elucidating the role of disorder and free-carrier recombination kinetics in CH3NH3PbI3 perovskite films
inferredcites →https://doi.org/10.1038/ncomms13219openalex-snapshot
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3103openalex-snapshot
Binning metagenomic contigs by coverage and composition
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.2openalex-snapshot
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.48openalex-snapshot
A new view of the tree of life
inferredcites →https://doi.org/10.1038/nrmicro2365openalex-snapshot
Autotrophic carbon fixation in archaea
inferredcites →https://doi.org/10.1038/nrmicro3330openalex-snapshot
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
inferredcites →https://doi.org/10.1038/s41564-017-0012-7openalex-snapshot
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
inferredcites →https://doi.org/10.1038/s41564-017-0098-yopenalex-snapshot
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
inferredcites →https://doi.org/10.1038/sdata.2017.203openalex-snapshot
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-snapshot
Genomic insights that advance the species definition for prokaryotes
inferredcites →https://doi.org/10.1073/pnas.0801980105openalex-snapshot
A korarchaeal genome reveals insights into the evolution of the Archaea
inferredcites →https://doi.org/10.1073/pnas.1203849109openalex-snapshot
Global distribution of microbial abundance and biomass in subseafloor sediment
inferredcites →https://doi.org/10.1073/pnas.1303090110openalex-snapshot
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
inferredcites →https://doi.org/10.1073/pnas.1711842115openalex-snapshot
The biomass distribution on Earth
inferredcites →https://doi.org/10.1073/pnas.95.12.6578openalex-snapshot
Prokaryotes: The unseen majority
inferredcites →https://doi.org/10.1089/ast.2009.0378openalex-snapshot
Novel Microbial Diversity Retrieved by Autonomous Robotic Exploration of the World's Deepest Vertical Phreatic Sinkhole
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts079openalex-snapshot
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
inferredcites →https://doi.org/10.1093/bioinformatics/bts174openalex-snapshot
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
inferredcites →https://doi.org/10.1093/bioinformatics/bts252openalex-snapshot
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot
HMMER web server: interactive sequence similarity searching
inferredcites →https://doi.org/10.1093/nar/gku169openalex-snapshot
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
inferredcites →https://doi.org/10.1099/00207713-45-3-528openalex-snapshot
Characterization and Description of Hyphomicrobium denitrificans sp. nov.
inferredcites →https://doi.org/10.1099/ijs.0.64483-0openalex-snapshot
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1462-2920.12616openalex-snapshot
The nexus of syntrophy‐associated microbiota in anaerobic digestion revealed by long‐term enrichment and community survey
inferredcites →https://doi.org/10.1111/1462-2920.12648openalex-snapshot
Potential for biogeochemical cycling of sulfur, iron and carbon within massive sulfide deposits below the seafloor
inferredcites →https://doi.org/10.1111/1574-6941.12196openalex-snapshot
Weighing the deep continental biosphere
inferredcites →https://doi.org/10.1111/1758-2229.12563openalex-snapshot
Major phylum‐level differences between porefluid and host rock bacterial communities in the terrestrial deep subsurface
inferredcites →https://doi.org/10.1126/science.1212665openalex-snapshot
Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
inferredcites →https://doi.org/10.1126/science.1224041openalex-snapshot
Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
inferredcites →https://doi.org/10.1128/aem.04199-13openalex-snapshot
Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera”
inferredcites →https://doi.org/10.1128/aem.61.3.1110-1115.1995openalex-snapshot
Criteria and methodology for identifying respiratory denitrifiers
inferredcites →https://doi.org/10.1128/aem.69.11.6345-6353.2003openalex-snapshot
Energy Conservation in Acetogenic Bacteria
inferredcites →https://doi.org/10.1128/jb.01688-14openalex-snapshot
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
inferredcites →https://doi.org/10.1128/mbio.00708-13openalex-snapshot
Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
inferredcites →https://doi.org/10.1128/mmbr.00033-09openalex-snapshot
Mapping the Tree of Life: Progress and Prospects
inferredcites →https://doi.org/10.1128/mmbr.61.4.533-616.1997openalex-snapshot
Cell biology and molecular basis of denitrification
inferredcites →https://doi.org/10.1146/annurev-marine-120709-142712openalex-snapshot
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
inferredcites →https://doi.org/10.1186/1471-2180-13-146openalex-snapshot
Functional microbial diversity explains groundwater chemistry in a pristine aquifer
inferredcites →https://doi.org/10.1371/journal.pcbi.1000844openalex-snapshot
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0022099openalex-snapshot
Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer
inferredcites →https://doi.org/10.17504/protocols.io.mp5c5q6openalex-snapshot
Building Phylogenetic Tree v1
inferredcites →https://doi.org/10.2166/wst.2008.391openalex-snapshot
Molecular and biokinetic characterization of methylotrophic denitrification using nitrate and nitrite as terminal electron acceptors
inferredcites →https://doi.org/10.3389/fmicb.2014.00610openalex-snapshot
Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA
inferredcites →https://doi.org/10.7717/peerj.1319openalex-snapshot
Anvi’o: an advanced analysis and visualization platform for ‘omics data
inferredcites →https://doi.org/10.7717/peerj.3558openalex-snapshot
290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
inferredcites →https://doi.org/10.7717/peerj.4098openalex-snapshot
Denitrifying metabolism of the methylotrophic marine bacterium Methylophaga nitratireducenticrescens strain JAM1
inferredcites →https://doi.org/10.7717/peerj.740openalex-snapshot
First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Depth significantly affects plastisphere microbial evenness, assembly and co-occurrence pattern but not richness and composition
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Biodegradable polylactic acid microplastics enhance methylmercury production in soils and promote mercury accumulation in rice grains in Northeastern China
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Effects of silver nanoparticles on performance of anaerobic digestion of sewage sludge and associated microbial communities
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Lists of names of prokaryotic Candidatus taxa
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An extension of Shannon’s entropy to explain taxa diversity and human diseases
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Shewanella is a putative producer of polyunsaturated fatty acids in the gut soil of the composting earthworm Eisenia fetida
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Shewanella is a putative producer of polyunsaturated fatty acids in the gut soil of the composting earthworm Eisenia fetida
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inferred← citeshttps://doi.org/10.1601/ex.34189openalex-snapshot
Exemplar Abstract for Abyssobacteria sp. corrig. None 2015 and Abyssubacteria sp. (sic) None 2015.
inferred← citeshttps://doi.org/10.1601/nm.34185openalex-snapshot
Nomenclature Abstract for Incertae sedis 487 Momper et al. 2018.
inferred← citeshttps://doi.org/10.1601/nm.34186openalex-snapshot
Nomenclature Abstract for Incertae sedis 488 Momper et al. 2018.
inferred← citeshttps://doi.org/10.1601/nm.34187openalex-snapshot
Nomenclature Abstract for Incertae sedis 489 Momper et al. 2018.
inferred← citeshttps://doi.org/10.1601/nm.34188openalex-snapshot
Nomenclature Abstract for Abyssubacteria (sic) Momper et al. 2018.
inferred← citeshttps://doi.org/10.1601/nm.35438openalex-snapshot
Nomenclature Abstract for Abyssobacteria corrig. Momper et al. 2018.
inferred← citeshttps://doi.org/10.1601/tx.34187openalex-snapshot
Taxonomic Abstract for the families.
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Long-distance electron transport in multicellular freshwater cable bacteria
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Long-Distance Electron Transport in Multicellular Freshwater Cable Bacteria
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Long-Distance Electron Transport in Multicellular Freshwater Cable Bacteria
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Long-distance electron transport in multicellular freshwater cable bacteria
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