On the public citation graph
Comparative Microbiome Signatures and Short-Chain Fatty Acids in Mouse, Rat, Non-human Primate, and Human Feces
0 signed · 326 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/art.39259openalex-snapshot
Review: Microbiome in Inflammatory Arthritis and Human Rheumatic Diseases
inferredcites →https://doi.org/10.1002/ibd.20903openalex-snapshot
Low counts of Faecalibacterium prausnitzii in colitis microbiota
inferredcites →https://doi.org/10.1002/jcp.25284openalex-snapshot
Human Microbiome and its Association With Health and Diseases
inferredcites →https://doi.org/10.1002/mrm.10207openalex-snapshot
Gastrointestinal transit times in mice and humans measured with 27Al and 19F nuclear magnetic resonance
inferredcites →https://doi.org/10.1007/978-1-4939-6427-7_2openalex-snapshot
Heterogeneous Stock Populations for Analysis of Complex Traits
inferredcites →https://doi.org/10.1007/978-1-4939-7471-9_5openalex-snapshot
Microbiome Sequencing Methods for Studying Human Diseases
inferredcites →https://doi.org/10.1007/s00018-017-2693-8openalex-snapshot
Mouse models for human intestinal microbiota research: a critical evaluation
inferredcites →https://doi.org/10.1007/s00405-016-4058-6openalex-snapshot
The possible mechanisms of the human microbiome in allergic diseases
inferredcites →https://doi.org/10.1016/j.cell.2006.02.017openalex-snapshot
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
inferredcites →https://doi.org/10.1016/j.cell.2006.08.043openalex-snapshot
Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection
inferredcites →https://doi.org/10.1016/j.chom.2014.11.010openalex-snapshot
Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
inferredcites →https://doi.org/10.1016/j.clim.2016.07.026openalex-snapshot
The human microbiome in rheumatic autoimmune diseases: A comprehensive review
inferredcites →https://doi.org/10.1016/j.jcmgh.2017.12.001openalex-snapshot
Engineered Human Gastrointestinal Cultures to Study the Microbiome and Infectious Diseases
inferredcites →https://doi.org/10.1038/4441022aopenalex-snapshot
Human gut microbes associated with obesity
inferredcites →https://doi.org/10.1038/ismej.2010.133openalex-snapshot
UniFrac: an effective distance metric for microbial community comparison
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nature12820openalex-snapshot
Diet rapidly and reproducibly alters the human gut microbiome
inferredcites →https://doi.org/10.1038/nbt.3353openalex-snapshot
A catalog of the mouse gut metagenome
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/oby.2009.74openalex-snapshot
Social Stress, Visceral Obesity, and Coronary Artery Atherosclerosis in Female Primates
inferredcites →https://doi.org/10.1053/gast.1996.v111.pm8690211openalex-snapshot
Characterization of Prostaglandin G/H Synthase 1 and 2 in rat, dog, monkey, and human gastrointestinal tracts
inferredcites →https://doi.org/10.1055/s-0037-1602763openalex-snapshot
The Human Gut Microbiome in Liver Diseases
inferredcites →https://doi.org/10.1073/pnas.0506655103openalex-snapshot
Molecular analysis of the bacterial microbiota in the human stomach
inferredcites →https://doi.org/10.1073/pnas.1007028107openalex-snapshot
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
inferredcites →https://doi.org/10.1086/204350openalex-snapshot
The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution
inferredcites →https://doi.org/10.1093/molbev/msq104openalex-snapshot
Adaptation and Constraint at Toll-Like Receptors in Primates
inferredcites →https://doi.org/10.1097/ppo.0000000000000052openalex-snapshot
Microbiome and Colorectal Carcinoma
inferredcites →https://doi.org/10.1097/psy.0000000000000163openalex-snapshot
Effects of Long-Term Sertraline Treatment and Depression on Coronary Artery Atherosclerosis in Premenopausal Female Primates
inferredcites →https://doi.org/10.1099/ijs.0.63472-0openalex-snapshot
Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents
inferredcites →https://doi.org/10.1099/mgen.0.000112openalex-snapshot
Human genome-microbiome interaction: metagenomics frontiers for the aetiopathology of autoimmune diseases
inferredcites →https://doi.org/10.1111/1574-6968.12111openalex-snapshot
Implications of the human microbiome in inflammatory bowel diseases
inferredcites →https://doi.org/10.1111/j.1530-0277.1984.tb05706.xopenalex-snapshot
Development of the National Institutes of Health Genetically Heterogeneous Rat Stock
inferredcites →https://doi.org/10.1126/science.1104816openalex-snapshot
Host-Bacterial Mutualism in the Human Intestine
inferredcites →https://doi.org/10.1126/science.1155725openalex-snapshot
Evolution of Mammals and Their Gut Microbes
inferredcites →https://doi.org/10.1126/science.1206025openalex-snapshot
Predicting a Human Gut Microbiota’s Response to Diet in Gnotobiotic Mice
inferredcites →https://doi.org/10.1126/science.aad9359openalex-snapshot
Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics
inferredcites →https://doi.org/10.1128/aem.00753-08openalex-snapshot
Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research
inferredcites →https://doi.org/10.1128/aem.60.9.3419-3420.1994openalex-snapshot
Deconjugation of bile acids by lactobacilli in the mouse small bowel
inferredcites →https://doi.org/10.1136/gut.2005.073817openalex-snapshot
Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach
inferredcites →https://doi.org/10.1152/ajpgi.00405.2011openalex-snapshot
An ex vivo method for studying mucus formation, properties, and thickness in human colonic biopsies and mouse small and large intestinal explants
inferredcites →https://doi.org/10.1159/000444436openalex-snapshot
Changes of Intestinal Functions in Liver Cirrhosis
inferredcites →https://doi.org/10.1186/gb-2011-12-6-r60openalex-snapshot
Metagenomic biomarker discovery and explanation
inferredcites →https://doi.org/10.1186/s13099-017-0163-3openalex-snapshot
We are not alone: a case for the human microbiome in extra intestinal diseases
inferredcites →https://doi.org/10.1186/s40168-015-0120-7openalex-snapshot
Variable responses of human and non-human primate gut microbiomes to a Western diet
inferredcites →https://doi.org/10.1242/dmm.017400openalex-snapshot
How informative is the mouse for human gut microbiota research?
inferredcites →https://doi.org/10.1258/002367789780886911openalex-snapshot
Comparative morphology of the stomach of some laboratory mammals
inferredcites →https://doi.org/10.1371/journal.pgen.1001314openalex-snapshot
The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
inferredcites →https://doi.org/10.1371/journal.pone.0085254openalex-snapshot
Altered Mucus Glycosylation in Core 1 O-Glycan-Deficient Mice Affects Microbiota Composition and Intestinal Architecture
inferredcites →https://doi.org/10.1371/journal.pone.0094863openalex-snapshot
Faecal Microbiota Composition in Adults Is Associated with the FUT2 Gene Determining the Secretor Status
inferredcites →https://doi.org/10.21037/atm.2017.06.21openalex-snapshot
Human microbiome in respiratory diseases
inferredcites →https://doi.org/10.2527/jas.2010-3371openalex-snapshot
COMPANION ANIMALS SYMPOSIUM: Humanized animal models of the microbiome1
inferredcites →https://doi.org/10.3389/fmicb.2018.01835openalex-snapshot
The Human Gut Microbiome – A Potential Controller of Wellness and Disease
inferredcites →https://doi.org/10.3389/fnut.2018.00028openalex-snapshot
Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet
inferredcites →https://doi.org/10.4161/gmic.19934openalex-snapshot
Comparative evaluation of establishing a human gut microbial community within rodent models
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4764957openalex-extracted
Aqueous Extract of Acer Truncatum Leaves Retards Drosophila Melanogaster Senescence by Regulating Amino Acid Metabolism and Gut Microbiota
inferred← citeshttps://doi.org/10.1002/advs.202203707openalex-snapshot
Toward a Deeper Understanding of Gut Microbiome in Depression: The Promise of Clinical Applicability
inferred← citeshttps://doi.org/10.1002/ajp.23718openalex-snapshot
Placental and Fetal Microbiota in Rhesus Macaque: A Case Study Using Metagenomic Sequencing
inferred← citeshttps://doi.org/10.1002/cphy.c220002openalex-snapshot
Hypoxia in the Pathophysiology of Inflammatory Bowel Disease
inferred← citeshttps://doi.org/10.1002/fft2.46openalex-snapshot
Impact of increasing concentration of tart and sweet cherries juices concentrates on healthy mice gut microbiota
inferred← citeshttps://doi.org/10.1002/fft2.546openalex-snapshot
Purple Yam Anthocyanin Forestalling Lipopolysaccharide‐Induced Intestine Damage by Selectively Promoting Lactococcus
inferred← citeshttps://doi.org/10.1002/j.2040-4603.2023.tb00268.xopenalex-snapshot
Hypoxia in the Pathophysiology of Inflammatory Bowel Disease
inferred← citeshttps://doi.org/10.1002/jor.25635openalex-snapshot
Characterization of the gut microbiome in an osteosarcoma mouse model
inferred← citeshttps://doi.org/10.1002/jssc.70275openalex-snapshot
Separation of Short‐ and Medium‐Chain Fatty Acids Using Capillary Electrophoresis With Indirect Photometric Detection: Part II: Validation of Endogenous Concentration in Rat Feces
inferred← citeshttps://doi.org/10.1002/mco2.70994openalex-snapshot
Microbial Signals in Cancer: Dissecting Host–Microbiota–Tumor Interactions and Potential Therapeutic Strategy
inferred← citeshttps://doi.org/10.1002/smll.202006252openalex-snapshot
Stem Cells for Next Level Toxicity Testing in the 21st Century
inferred← citeshttps://doi.org/10.1007/978-3-030-57499-4_140openalex-snapshot
Microbiome Product Toxicology: Regulatory View on Translational Challenges
inferred← citeshttps://doi.org/10.1007/978-3-031-34884-6_9openalex-snapshot
Gut Microbiome and Liver Diseases from the Perspective of 3PM: The Predictive, Preventive, and Personalized Medicine
inferred← citeshttps://doi.org/10.1007/978-3-031-68237-7_6openalex-snapshot
Rise of Macaque Models for Immunity and Infection Research
inferred← citeshttps://doi.org/10.1007/978-3-642-36206-4_140-1openalex-snapshot
Microbiome Product Toxicology: Regulatory View on Translational Challenges
inferred← citeshttps://doi.org/10.1007/s00203-026-04822-9openalex-snapshot
Interactions between bacterial microbiota and protozoan parasites: an intimate relationship
inferred← citeshttps://doi.org/10.1007/s00284-024-03785-8openalex-snapshot
Human Infant Fecal Microbiota Differentially Influences the Mucosal Immune Pathways Upon Influenza Infection in a Humanized Gnotobiotic Pig Model
inferred← citeshttps://doi.org/10.1007/s00335-021-09868-2openalex-snapshot
Mutational analyses of novel rat models with targeted modifications in inflammatory bowel disease susceptibility genes
inferred← citeshttps://doi.org/10.1007/s00335-021-09871-7openalex-snapshot
Taxonomic composition and variation in the gut microbiota of laboratory mice
inferred← citeshttps://doi.org/10.1007/s00394-020-02208-1openalex-snapshot
Prebiotic potencial of juçara berry on changes in gut bacteria and acetate of individuals with obesity
inferred← citeshttps://doi.org/10.1007/s10068-023-01267-4openalex-snapshot
Effects of black raspberry extract on gut microbiota, microbial metabolites, and expressions of the genes involved in cholesterol and bile acid metabolisms in rats fed excessive choline with a high-fat diet
inferred← citeshttps://doi.org/10.1007/s11033-022-07875-3openalex-snapshot
Detection of indigenous gut bacteria related to red chilli pepper (Capsicum annuum) in murine caecum and human faecal cultures
inferred← citeshttps://doi.org/10.1007/s11033-022-08237-9openalex-snapshot
Detection of typical indigenous gut bacteria related to turmeric (Curcuma longa) powder in mouse caecum and human faecal cultures
inferred← citeshttps://doi.org/10.1007/s11274-025-04601-6openalex-snapshot
Novel degenerate PCR primers targeting the β-galactosidase gene for broad-spectrum identification of lactose-degrading bacteria
inferred← citeshttps://doi.org/10.1007/s11357-025-01539-3openalex-snapshot
Fecal microbiota transplant from long-living Ames dwarf mice alters the microbial composition and biomarkers of liver health in normal mice
inferred← citeshttps://doi.org/10.1007/s11481-021-10046-zopenalex-snapshot
Opioid Use, Gut Dysbiosis, Inflammation, and the Nervous System
inferred← citeshttps://doi.org/10.1007/s11694-026-04544-yopenalex-snapshot
Dendrobium officinale Kimura & Migo polysaccharides as potential prebiotics: gut microbiota regulation, health effects, and application prospects
inferred← citeshttps://doi.org/10.1007/s11904-019-00441-wopenalex-snapshot
HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration
inferred← citeshttps://doi.org/10.1007/s12013-025-01981-2openalex-snapshot
Fisetin-loaded Nanoemulsion and Fecal Microbiome Extract Enhance In Vitro Inhibition of Non-Small Cell Lung Cancer Progression
inferred← citeshttps://doi.org/10.1007/s13205-024-03960-5openalex-snapshot
Detection of typical indigenous gut bacteria related to kanpyo Lagenaria siceraria var. hispida powder in murine caecum and human faecal cultures
inferred← citeshttps://doi.org/10.1016/b978-0-12-822003-0.00014-0openalex-snapshot
Autophagy in the liver
inferred← citeshttps://doi.org/10.1016/j.aninu.2020.03.003openalex-snapshot
Effect of different starch sources in a raw meat-based diet on fecal microbiome in dogs housed in a shelter
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2021.736500openalex-snapshot
Intestinal microbial diversity is higher in Pacific abalone (Haliotis discus hannai) with slower growth rates
inferred← citeshttps://doi.org/10.1016/j.arr.2026.103036openalex-snapshot
Gut microbiota-derived metabolites as immune modulators in aging and age-related chronic inflammatory diseases
inferred← citeshttps://doi.org/10.1016/j.arr.2026.103278openalex-snapshot
From primates to people: Mapping host-microbiome-health relationships in aging
inferred← citeshttps://doi.org/10.1016/j.bbr.2025.116019openalex-snapshot
Gut microbiota mediated neuroinflammation in psychiatric disorders: Current perspectives and challenges
inferred← citeshttps://doi.org/10.1016/j.chroma.2025.466263openalex-snapshot
Simple and sensitive LC-MS analysis of short chain fatty acids in cecum content and feces in mice: A derivatization-free approach
inferred← citeshttps://doi.org/10.1016/j.clim.2020.108575openalex-snapshot
Effects of dietary restriction on gut microbiota and CNS autoimmunity
inferred← citeshttps://doi.org/10.1016/j.crfs.2025.101199openalex-snapshot
Sodium alginate supplementation can alleviate non-alcoholic fatty liver disease in rats by restoring hepatic lipid metabolism and gut microbiota
inferred← citeshttps://doi.org/10.1016/j.ebiom.2019.08.032openalex-snapshot
Modified Mediterranean-ketogenic diet modulates gut microbiome and short-chain fatty acids in association with Alzheimer's disease markers in subjects with mild cognitive impairment
inferred← citeshttps://doi.org/10.1016/j.ejpb.2024.114453openalex-snapshot
Contrasting the pharmacokinetic performance and gut microbiota effects of an amorphous solid dispersion and lipid nanoemulsion for a poorly water-soluble anti-psychotic
inferred← citeshttps://doi.org/10.1016/j.envint.2023.108212openalex-snapshot
Liquid crystal monomers in ventilation and air conditioning dust: Indoor characteristics, sources analysis and toxicity assessment
inferred← citeshttps://doi.org/10.1016/j.envpol.2024.123732openalex-snapshot
The effects of heavy metal exposure on brain and gut microbiota: A systematic review of animal studies
inferred← citeshttps://doi.org/10.1016/j.fct.2024.114845openalex-snapshot
Transcriptional and biochemical changes in mouse liver following exposure to a metal/drug cocktail. Attenuating effect of a selenium-enriched diet
inferred← citeshttps://doi.org/10.1016/j.foodres.2021.110273openalex-snapshot
The different effects of Chinese Herb Solid Drink and lactulose on gut microbiota in rats with slow transit constipation induced by compound diphenoxylate
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e15417openalex-snapshot
The influence of antibiotic treatment on the behavior and gut microbiome of adult rats neonatally insulted with lipopolysaccharide
inferred← citeshttps://doi.org/10.1016/j.heliyon.2026.e44741openalex-snapshot
Escherichia coli extract (OM-89) preserves gut microbial balance more effectively than antibiotics in a healthy mouse model
inferred← citeshttps://doi.org/10.1016/j.ijantimicag.2025.107560openalex-snapshot
Efficacy of a bacteriophage cocktail (Arash and Ariobarzanes) in the treatment of Salmonella typhimurium infection in a rat model
inferred← citeshttps://doi.org/10.1016/j.intimp.2021.108388openalex-snapshot
Azithromycin pretreatment exacerbates atopic dermatitis in trimellitic anhydride-induced model mice accompanied by correlated changes in the gut microbiota and serum cytokines
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110853openalex-snapshot
Crosstalk between butyrate oxidation in colonocyte and butyrate-producing bacteria
inferred← citeshttps://doi.org/10.1016/j.jcmgh.2022.04.009openalex-snapshot
A Planar Culture Model of Human Absorptive Enterocytes Reveals Metformin Increases Fatty Acid Oxidation and Export
inferred← citeshttps://doi.org/10.1016/j.jep.2026.121969openalex-snapshot
Revealing the enhancing mechanism and material basis of bile-processed Coptidis Rhizoma in anti-anxiety from perspective of cross organ regulation
inferred← citeshttps://doi.org/10.1016/j.jff.2019.103467openalex-snapshot
Detection and isolation of bacteria affected by dietary cumin, coriander, turmeric, and red chili pepper in the caecum of ICR mice
inferred← citeshttps://doi.org/10.1016/j.jnutbio.2020.108362openalex-snapshot
Housing condition-associated changes in gut microbiota further affect the host response to diet-induced nonalcoholic fatty liver
inferred← citeshttps://doi.org/10.1016/j.lfs.2024.123244openalex-snapshot
Contributions of the gut microbiota to Gulf War Illness susceptibility: Findings from a mouse model
inferred← citeshttps://doi.org/10.1016/j.neo.2020.12.008openalex-snapshot
Implications of the microbiome in the development and treatment of pancreatic cancer: Thinking outside of the box by looking inside the gut
inferred← citeshttps://doi.org/10.1016/j.neubiorev.2023.105320openalex-snapshot
The interactive effects of psychosocial stress and diet composition on health in primates
inferred← citeshttps://doi.org/10.1016/j.neuropharm.2019.107909openalex-snapshot
Treatment with gut bifidobacteria improves hippocampal plasticity and cognitive behavior in adult healthy rats
inferred← citeshttps://doi.org/10.1016/j.phrs.2021.105681openalex-snapshot
Butyrate protects endothelial function through PPARδ/miR-181b signaling
inferred← citeshttps://doi.org/10.1016/j.phrs.2026.108269openalex-snapshot
Gut-derived commensal bacteria attenuate corticosterone-induced depressive-like behavior via regulation of oxidative stress and mitochondrial apoptotic signalling
inferred← citeshttps://doi.org/10.1016/j.psyneuen.2020.104750openalex-snapshot
The gut microbiota metabolite indole increases emotional responses and adrenal medulla activity in chronically stressed male mice
inferred← citeshttps://doi.org/10.1016/j.redox.2023.102829openalex-snapshot
Melatonin promotes gut anti-oxidative status in perinatal rat by remodeling the gut microbiome
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.179109openalex-snapshot
On the role of bacterial gut microbiota from supralittoral amphipod Talitrus saltator (Montagu, 1808) in bioplastic degradation
inferred← citeshttps://doi.org/10.1016/j.sempedsurg.2023.151313openalex-snapshot
What animal model should I use to study necrotizing enterocolitis?
inferred← citeshttps://doi.org/10.1016/j.smim.2022.101651openalex-snapshot
Redefining microglia states: Lessons and limits of human and mouse models to study microglia states in neurodegenerative diseases
inferred← citeshttps://doi.org/10.1016/j.tibtech.2020.07.009openalex-snapshot
In Vitro Models of Intestine Innate Immunity
inferred← citeshttps://doi.org/10.1016/j.tifs.2025.104980openalex-snapshot
Modernizing gut-brain axis research in nutritional Science: The role of human-centered New Approach Methodologies
inferred← citeshttps://doi.org/10.1016/j.tjnut.2026.101579openalex-snapshot
Antidiabetic Kidney Disease Benefits of Feeding Rice Starch/Inulin-Enriched Extruded Rice to Diabetes Homozygous Mice
inferred← citeshttps://doi.org/10.1016/j.toxlet.2025.111780openalex-snapshot
Microbiological toxicology of the new antibiotic aditoprim on human intestinal microbiota
inferred← citeshttps://doi.org/10.1016/j.yrtph.2022.105266openalex-snapshot
Considerations for determining safety of probiotics: A USP perspective
inferred← citeshttps://doi.org/10.1021/acs.jafc.0c06279openalex-snapshot
Xylooligosaccharides Increase Bifidobacteria and Lachnospiraceae in Mice on a High-Fat Diet, with a Concomitant Increase in Short-Chain Fatty Acids, Especially Butyric Acid
inferred← citeshttps://doi.org/10.1021/acs.jafc.5c12022openalex-snapshot
Dietary Fibers as Drivers of Short-Chain Fatty Acids Homeostasis: A Review of Intestinal Production, Systemic Distribution, and Inter-Individual Variation
inferred← citeshttps://doi.org/10.1021/acs.jafc.5c14447openalex-snapshot
Effective Capture of Acrolein In Vivo Using the Combination of Ergothioneine and Aminobutyric Acid, or Mushrooms as a Carrier, in Both Mice and Human Models
inferred← citeshttps://doi.org/10.1021/acs.jnatprod.5c01493openalex-snapshot
The Complex Interplay between Botanical Supplements and the Human Gut Microbiome
inferred← citeshttps://doi.org/10.1038/s12276-020-0473-2openalex-snapshot
Of men in mice: the development and application of a humanized gnotobiotic mouse model for microbiome therapeutics
inferred← citeshttps://doi.org/10.1038/s41390-022-02002-1openalex-snapshot
Metabolome and microbiome multi-omics integration from a murine lung inflammation model of bronchopulmonary dysplasia
inferred← citeshttps://doi.org/10.1038/s41467-021-21195-3openalex-snapshot
Production of germ-free mosquitoes via transient colonisation allows stage-specific investigation of host–microbiota interactions
inferred← citeshttps://doi.org/10.1038/s41467-025-56470-0openalex-snapshot
Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
inferred← citeshttps://doi.org/10.1038/s41467-025-56498-2openalex-snapshot
Plant-nanoparticles enhance anti-PD-L1 efficacy by shaping human commensal microbiota metabolites
inferred← citeshttps://doi.org/10.1038/s41531-025-01236-0openalex-snapshot
Gut bacteria composition in animal models of Parkinson’s disease: a systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1038/s41551-024-01318-zopenalex-snapshot
A gut-on-a-chip incorporating human faecal samples and peristalsis predicts responses to immune checkpoint inhibitors for melanoma
inferred← citeshttps://doi.org/10.1038/s41575-025-01162-9openalex-snapshot
Metabolic dysfunction-associated steatotic liver disease and steatohepatitis-associated hepatocarcinoma preclinical models
inferred← citeshttps://doi.org/10.1038/s41582-022-00703-zopenalex-snapshot
The neurovascular unit and systemic biology in stroke — implications for translation and treatment
inferred← citeshttps://doi.org/10.1038/s41598-019-45467-7openalex-snapshot
Antibiotic-induced decreases in the levels of microbial-derived short-chain fatty acids correlate with increased gastrointestinal colonization of Candida albicans
inferred← citeshttps://doi.org/10.1038/s41598-021-93779-4openalex-snapshot
Comparative analysis of oral-gut microbiota between captive and wild long-tailed macaque in Thailand
inferred← citeshttps://doi.org/10.1038/s41598-022-10762-3openalex-snapshot
Shotgun metagenomic sequencing revealed the prebiotic potential of a grain-based diet in mice
inferred← citeshttps://doi.org/10.1038/s42003-021-02183-1openalex-snapshot
Development of a mechanistic model to predict synthetic biotic activity in healthy volunteers and patients with phenylketonuria
inferred← citeshttps://doi.org/10.1039/d2fo01161aopenalex-snapshot
The different effects of psyllium husk and orlistat on weight control, the amelioration of hypercholesterolemia and non-alcohol fatty liver disease in obese mice induced by a high-fat diet
inferred← citeshttps://doi.org/10.1053/j.gastro.2025.03.018openalex-snapshot
Heavy Metals and Inflammatory Bowel Disease
inferred← citeshttps://doi.org/10.1055/a-1036-4206openalex-snapshot
Präklinische Einblicke in das Zusammenspiel von Mikrobiota und Verhalten
inferred← citeshttps://doi.org/10.1080/00071668.2021.1960950openalex-snapshot
Acetate promotes lipogenesis in adipocytes but not in hepatocytes of chickens
inferred← citeshttps://doi.org/10.1080/0886022x.2020.1830108openalex-snapshot
Large animal models for translational research in acute kidney injury
inferred← citeshttps://doi.org/10.1080/17435390.2020.1818325openalex-snapshot
Short-term oral administration of non-porous and mesoporous silica did not induce local or systemic toxicity in mice
inferred← citeshttps://doi.org/10.1080/19490976.2020.1779002openalex-snapshot
Modulation of gut microbiota in healthy rats after exposure to nutritional supplements
inferred← citeshttps://doi.org/10.1080/19490976.2024.2380061openalex-snapshot
MS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody
inferred← citeshttps://doi.org/10.1080/19490976.2025.2464225openalex-snapshot
Uncovering de novo polyamine biosynthesis in the gut microbiome and its alteration in inflammatory bowel disease
inferred← citeshttps://doi.org/10.1080/19490976.2025.2600053openalex-snapshot
A defined bacterial consortium and spatial transcriptomics highlight the complex interaction between Campylobacter jejuni and the murine intestine
inferred← citeshttps://doi.org/10.1080/19490976.2026.2649440openalex-snapshot
Limosilactobacillus reuteri normalizes gut microbiota dysfunction and social deficits of rat offspring associated with prenatal exposure to stress
inferred← citeshttps://doi.org/10.1080/19490976.2026.2687925openalex-snapshot
Mapping the metagenomic landscape: combined shotgun sequencing and quantitative PCR to profile gut metagenome-assembled genomes in marmosets following treatment with a broad-spectrum antibiotic cocktail
inferred← citeshttps://doi.org/10.1093/gerona/glaa048openalex-snapshot
Age-Related Differences in the Gut Microbiome of Rhesus Macaques
inferred← citeshttps://doi.org/10.1093/nar/gkae1036openalex-snapshot
miRNATissueAtlas 2025: an update to the uniformly processed and annotated human and mouse non-coding RNA tissue atlas
inferred← citeshttps://doi.org/10.1093/oxfimm/iqae008openalex-snapshot
The gut-lung axis: the impact of the gut mycobiome on pulmonary diseases and infections
inferred← citeshttps://doi.org/10.1093/toxres/tfae143openalex-snapshot
Investigation of the toxicity and safety concerns of transgenic maize seeds expressing immunogenic F and HN protein genes against Newcastle disease virus
inferred← citeshttps://doi.org/10.1096/fba.2022-00048openalex-snapshot
Regional brain activation during rectal distention and attenuation with alosetron in a nonhuman primate model of irritable bowel syndrome
inferred← citeshttps://doi.org/10.1096/fj.202002215ropenalex-snapshot
Lack of peptide YY signaling in mice disturbs gut microbiome composition in response to high‐fat diet
inferred← citeshttps://doi.org/10.1097/nt.0000000000000481openalex-snapshot
An Overview of Current Knowledge of the Gut Microbiota and Low-Calorie Sweeteners
inferred← citeshttps://doi.org/10.1097/shk.0000000000001736openalex-snapshot
Gut Microbial Changes and their Contribution to Post-Burn Pathology
inferred← citeshttps://doi.org/10.1097/spc.0000000000000717openalex-snapshot
The gut microbiome and the brain
inferred← citeshttps://doi.org/10.1099/ijsem.0.005276openalex-snapshot
Alkaliphilus flagellatus sp. nov., Butyricicoccus intestinisimiae sp. nov., Clostridium mobile sp. nov., Clostridium simiarum sp. nov., Dysosmobacter acutus sp. nov., Paenibacillus brevis sp. nov., Peptoniphilus ovalis sp. nov. and Tissierella simiarum sp. nov., isolated from monkey faeces
inferred← citeshttps://doi.org/10.1099/ijsem.0.007209openalex-snapshot
Luteococcus struthionis sp. nov. and Lacrimispora struthionigena sp. nov. isolated from ostrich faeces
inferred← citeshttps://doi.org/10.1101/2019.12.31.891671openalex-snapshot
Production of germ-free mosquitoes via transient colonisation allows stage-specific investigation of host-microbiota interactions
inferred← citeshttps://doi.org/10.1101/2020.04.29.069575openalex-snapshot
Experimental Stroke Induces Chronic Gut Dysbiosis and Neuroinflammation in Male Mice
inferred← citeshttps://doi.org/10.1101/2020.07.15.201657openalex-snapshot
Reconstitution of the host holobiont in germ-free rats acutely increases bone growth and affects marrow cellular content
inferred← citeshttps://doi.org/10.1101/2021.07.15.452564openalex-snapshot
Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics
inferred← citeshttps://doi.org/10.1101/2021.09.23.461610openalex-snapshot
Alkaliphilus flagellata sp. nov., Butyricicoccus intestinisimiae sp. nov., Clostridium mobile sp. nov., Clostridium simiarum sp. nov., Dysosmobacter acutus sp. nov., Paenibacillus brevis sp. nov., Peptoniphilus ovalis sp. nov., and Tissierella simiarum sp. nov., isolated from monkey feces
inferred← citeshttps://doi.org/10.1101/2021.10.12.464166openalex-snapshot
Development of a metatranscriptomic analysis method for multiple intestinal sites and its application to the common marmoset intestine
inferred← citeshttps://doi.org/10.1101/2022.01.24.477515openalex-snapshot
Transcriptomics informs design of a planar human enterocyte culture system that reveals metformin enhances fatty acid export
inferred← citeshttps://doi.org/10.1101/2022.03.05.483098openalex-snapshot
Gut microbiota-derived tryptamine impairs insulin sensitivity
inferred← citeshttps://doi.org/10.1101/lm.054160.125openalex-snapshot
Item recognition is associated with gut microbiota composition in healthy humans
inferred← citeshttps://doi.org/10.1111/1541-4337.13057openalex-snapshot
Review of factors affecting citrus polyphenol bioavailability and their importance in designing in vitro, animal, and intervention studies
inferred← citeshttps://doi.org/10.1111/asj.13366openalex-snapshot
Comparison of the fecal microbiota of two monogastric herbivorous and five omnivorous mammals
inferred← citeshttps://doi.org/10.1111/bph.16312openalex-snapshot
Bioavailability of flumequine and diclofenac in mice exposed to a metal‐drug chemical cocktail. Evaluation of the protective role of selenium.
inferred← citeshttps://doi.org/10.1111/dom.71245openalex-snapshot
Oral Butyrate Reduces Progression of Kidney Damage in an L‐ NAME ‐Induced Diabetic Kidney Disease Mouse Model
inferred← citeshttps://doi.org/10.1111/febs.16632openalex-snapshot
Importance of temperature on immuno‐metabolic regulation and cancer progression
inferred← citeshttps://doi.org/10.1111/febs.17249openalex-snapshot
Obesity and the gut microbiota: implications of neuroendocrine and immune signaling
inferred← citeshttps://doi.org/10.1111/gbb.70012openalex-snapshot
Fecal Microbiota Transplantation ( FMT ) From a Human at Low Risk for Alzheimer's Disease Improves Short‐Term Recognition Memory and Increases Neuroinflammation in a 3xTg AD Mouse Model
inferred← citeshttps://doi.org/10.1111/jcmm.70491openalex-snapshot
Microbial Influences on Calcium‐Phosphorus Homeostasis and Metabolic Bone Diseases: A Bidirectional Mendelian Randomisation Study on the Gut–Bone Axis
inferred← citeshttps://doi.org/10.1111/jmp.70009openalex-snapshot
High‐Throughput DNA Metabarcoding for the Gut Microbiome Assessment of Captive White‐Handed Gibbon and Siamang
inferred← citeshttps://doi.org/10.1111/jnc.70530openalex-snapshot
Effect of Prenatal and Postnatal Stress in Rats on the Gut Microbiome in Adolescence
inferred← citeshttps://doi.org/10.1111/joim.13021openalex-snapshot
The role of the microbiota in sedentary lifestyle disorders and ageing: lessons from the animal kingdom
inferred← citeshttps://doi.org/10.1111/jpn.13248openalex-snapshot
The effect of fly maggot in pig feeding diets on growth performance and gut microbial balance in Ningxiang pigs
inferred← citeshttps://doi.org/10.1111/nmo.15022openalex-snapshot
Use of Human In Vitro Gut Specimens for Translational Neurogastroenterology and Motility in the 21st Century
inferred← citeshttps://doi.org/10.1128/aem.00645-26openalex-snapshot
Cadmium toxicity to the human gut microbiome varies depending on composition
inferred← citeshttps://doi.org/10.1128/aem.00707-25openalex-snapshot
Commensal acidification of specific gut regions produces a protective priority effect against enteropathogenic bacterial infection
inferred← citeshttps://doi.org/10.1128/mbio.01183-22openalex-snapshot
The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity
inferred← citeshttps://doi.org/10.1128/mbio.01904-25openalex-snapshot
Assessment of ecological fidelity of human microbiome-associated mice in observational studies and an interventional trial
inferred← citeshttps://doi.org/10.1128/msphere.00869-20openalex-snapshot
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice
inferred← citeshttps://doi.org/10.1128/msystems.00520-22openalex-snapshot
Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine
inferred← citeshttps://doi.org/10.1128/msystems.00608-22openalex-snapshot
Unique Features of the Gut Microbiome Characterized in Animal Models of Angelman Syndrome
inferred← citeshttps://doi.org/10.1136/gutjnl-2019-320135openalex-snapshot
Angiogenin maintains gut microbe homeostasis by balancing α-Proteobacteria and Lachnospiraceae
inferred← citeshttps://doi.org/10.1136/gutjnl-2020-321031openalex-snapshot
Ginseng polysaccharides alter the gut microbiota and kynurenine/tryptophan ratio, potentiating the antitumour effect of antiprogrammed cell death 1/programmed cell death ligand 1 (anti-PD-1/PD-L1) immunotherapy
inferred← citeshttps://doi.org/10.1142/s0192415x24500502openalex-snapshot
Gut Microbiota Regulation by Acupuncture and Moxibustion: A Systematic Review and Meta-Analysis
inferred← citeshttps://doi.org/10.1152/ajpgi.00175.2022openalex-snapshot
Examining enteric nervous system function in rat and mouse: an interspecies comparison of colonic motility
inferred← citeshttps://doi.org/10.1152/physiolgenomics.00013.2024openalex-snapshot
Chronotropic and vasoactive properties of the gut bacterial short-chain fatty acids in larval zebrafish
inferred← citeshttps://doi.org/10.1152/physiolgenomics.00017.2021openalex-snapshot
Reconstitution of the host holobiont in germ-free born male rats acutely increases bone growth and affects marrow cellular content
inferred← citeshttps://doi.org/10.1152/physiolgenomics.00114.2020openalex-snapshot
The Atg16l1 gene: characterization of wild type, knock-in, and knock-out phenotypes in rats
inferred← citeshttps://doi.org/10.1155/2024/6653560openalex-snapshot
Variations in Gut Microbiome Profiles Based on Different DNA Extraction Methods: A Comparative Study
inferred← citeshttps://doi.org/10.1158/0008-5472.can-25-3546openalex-snapshot
Gut Check: Lactobacillus johnsonii Harnesses Bile Acids and Reactive Oxygen Species to Suppress High-Fat Diet–Induced Colorectal Cancer
inferred← citeshttps://doi.org/10.1158/2767-9764.crc-23-0479openalex-snapshot
Role of Gut Microbiome in Neoadjuvant Chemotherapy Response in Urothelial Carcinoma: A Multi-institutional Prospective Cohort Evaluation
inferred← citeshttps://doi.org/10.1161/hypertensionaha.120.15123openalex-snapshot
Gut Microbiota Profile Identifies Transition From Compensated Cardiac Hypertrophy to Heart Failure in Hypertensive Rats
inferred← citeshttps://doi.org/10.1167/iovs.62.10.31openalex-snapshot
Dysbiosis in the Gut Microbiome in Streptozotocin-Induced Diabetes Rats and Follow-Up During Retinal Changes
inferred← citeshttps://doi.org/10.1172/jci.insight.132055openalex-snapshot
A human-origin probiotic cocktail ameliorates aging-related leaky gut and inflammation via modulating the microbiota/taurine/tight junction axis
inferred← citeshttps://doi.org/10.1177/1099800420943961openalex-snapshot
The Impact of Traumatic Brain Injury on Microbiome Composition: A Systematic Review
inferred← citeshttps://doi.org/10.1186/s12866-021-02146-wopenalex-snapshot
Changes in the gut microbiome community of nonhuman primates following radiation injury
inferred← citeshttps://doi.org/10.1186/s12967-025-06806-7openalex-snapshot
Effects of prebiotics and phytochemicals on serum trimethylamine N-oxide reduction and gut microbiota: a systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1186/s40168-019-0746-yopenalex-snapshot
Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine
inferred← citeshttps://doi.org/10.1186/s40168-021-01069-yopenalex-snapshot
Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model
inferred← citeshttps://doi.org/10.1186/s40168-021-01175-xopenalex-snapshot
Xylan alleviates dietary fiber deprivation-induced dysbiosis by selectively promoting Bifidobacterium pseudocatenulatum in pigs
inferred← citeshttps://doi.org/10.1186/s40168-022-01306-yopenalex-snapshot
Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate
inferred← citeshttps://doi.org/10.1186/s40478-024-01877-xopenalex-snapshot
Host genetics and gut microbiota influence lipid metabolism and inflammation: potential implications for ALS pathophysiology in SOD1G93A mice
inferred← citeshttps://doi.org/10.1186/s42523-024-00338-zopenalex-snapshot
Microbiome signature suggestive of lactose-intolerance in rhesus macaques (Macaca mulatta) with intermittent chronic diarrhea
inferred← citeshttps://doi.org/10.1186/s42523-025-00410-2openalex-snapshot
AI for rapid identification of major butyrate-producing bacteria in rhesus macaques (Macaca mulatta)
inferred← citeshttps://doi.org/10.1208/s12249-022-02330-9openalex-snapshot
Factors Limiting the Translatability of Rodent Model–Based Intranasal Vaccine Research to Humans
inferred← citeshttps://doi.org/10.1242/jeb.245081openalex-snapshot
Weanling gut microbiota composition of a mouse model selectively bred for high voluntary wheel-running behavior
inferred← citeshttps://doi.org/10.1371/journal.pone.0259973openalex-snapshot
Analysing microbiome intervention design studies: Comparison of alternative multivariate statistical methods
inferred← citeshttps://doi.org/10.1371/journal.pone.0281049openalex-snapshot
The effects of microbiome-targeted therapy on cognitive impairment and postoperative cognitive dysfunction—A systematic review
inferred← citeshttps://doi.org/10.1371/journal.pone.0317657openalex-snapshot
Gut microbiota signatures of the three Mexican primate species, including hybrid populations
inferred← citeshttps://doi.org/10.1371/journal.ppat.1009959openalex-snapshot
A short chain fatty acid–centric view of Clostridioides difficile pathogenesis
inferred← citeshttps://doi.org/10.1538/expanim.23-0025openalex-snapshot
Establishment of a human microbiome- and immune system-reconstituted dual-humanized mouse model
inferred← citeshttps://doi.org/10.15789/2220-7619-sic-1507openalex-snapshot
Salmonella-induced changes of the rat intestinal microbiota
inferred← citeshttps://doi.org/10.18174/635894openalex-snapshot
Use of new approach methodologies (NAMs) to study the effects of antibiotics on bile acidhomeostasis
inferred← citeshttps://doi.org/10.20411/pai.v5i1.394openalex-snapshot
Changes in the Serum Metabolome of Patients Treated With Broad-Spectrum Antibiotics
inferred← citeshttps://doi.org/10.21203/rs.3.rs-30540/v1openalex-snapshot
Analysing microbiome intervention studies: Does choice of a statistical method affect biological interpretation?
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3829658/v1openalex-snapshot
Evaluation of innate lymphoid cells and long-term cognition in a rat model of experimental sepsis
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4364077/v1openalex-snapshot
A Mouse Model of Damp-Heat Syndrome with Pancreatic Cancer in Traditional Chinese Medicine and Its Characteristics of Gut Microbiome
inferred← citeshttps://doi.org/10.21203/rs.3.rs-907851/v1openalex-snapshot
Establishment of Base Interactions of Select Genus Between Multiple Chick Sources in Differential Housing
inferred← citeshttps://doi.org/10.22416/1382-4376-2022-32-2-19-34openalex-snapshot
Direct and Indirect Methods for Studying Human Gut Microbiota
inferred← citeshttps://doi.org/10.26226/morressier.5f3288739a6b12016a74ff59openalex-snapshot
Analysing microbiome intervention studies: Does choice of a statistical method affect biological interpretation?
inferred← citeshttps://doi.org/10.26226/morressier.5f3392ca9d1718ca4c8b2f08openalex-snapshot
Analysing microbiome intervention studies: Does choice of a statistical method affect biological interpretation?
inferred← citeshttps://doi.org/10.26873/svr-2029-2024openalex-snapshot
GUT MICROBIOME IN CANCER: THE NEXT BIG OPPORTUNITY FOR BETTER PATIENT OUTCOMES?
inferred← citeshttps://doi.org/10.3233/jpd-212922openalex-snapshot
Preventing Parkinson’s Disease: An Environmental Agenda
inferred← citeshttps://doi.org/10.32469/10355/88869openalex-snapshot
Characterization of the rat Atg16l1 gene and its role in autophagy and disease
inferred← citeshttps://doi.org/10.3389/adar.2023.11092openalex-snapshot
Role of the gut-brain axis in HIV and drug abuse-mediated neuroinflammation
inferred← citeshttps://doi.org/10.3389/fcimb.2020.00073openalex-snapshot
Household Pet Ownership and the Microbial Diversity of the Human Gut Microbiota
inferred← citeshttps://doi.org/10.3389/fcimb.2021.702628openalex-snapshot
Surgical Menopause and Estrogen Therapy Modulate the Gut Microbiota, Obesity Markers, and Spatial Memory in Rats
inferred← citeshttps://doi.org/10.3389/fcimb.2022.854164openalex-snapshot
EasyMap - An Interactive Web Tool for Evaluating and Comparing Associations of Clinical Variables and Microbiome Composition
inferred← citeshttps://doi.org/10.3389/fcimb.2022.974259openalex-snapshot
The role and therapeutic potential of gut microbiome in severe burn
inferred← citeshttps://doi.org/10.3389/fendo.2025.1555203openalex-snapshot
Gut microbiota is involved in the exacerbation of adrenal glucocorticoid steroidogenesis in diabetic animals by activation of the TLR4 pathway
inferred← citeshttps://doi.org/10.3389/fimmu.2020.00255openalex-snapshot
Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset
inferred← citeshttps://doi.org/10.3389/fimmu.2024.1432307openalex-snapshot
Metamizole outperforms meloxicam in sepsis: insights on analgesics, survival and immunomodulation in the peritoneal contamination and infection sepsis model
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02261openalex-snapshot
Microcins in Enterobacteriaceae: Peptide Antimicrobials in the Eco-Active Intestinal Chemosphere
inferred← citeshttps://doi.org/10.3389/fmicb.2022.897283openalex-snapshot
The Response of the Rodent Gut Microbiome to Broad-Spectrum Antibiotics Is Different in Males and Females
inferred← citeshttps://doi.org/10.3389/fmicb.2022.920190openalex-snapshot
Host species and habitats shape the bacterial community of gut microbiota of three non-human primates: Siamangs, white-handed gibbons, and Bornean orangutans
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1258775openalex-snapshot
Microclimate shapes the phylosymbiosis of rodent gut microbiota in Jordan’s Great Rift Valley
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1283453openalex-snapshot
Comparative analysis of the intestinal microbiome in Rattus norvegicus from different geographies
inferred← citeshttps://doi.org/10.3389/fmolb.2023.1182643openalex-snapshot
Dietary fiber modulates gut microbiome and metabolome in a host sex-specific manner in a murine model of aging
inferred← citeshttps://doi.org/10.3389/fnagi.2022.986127openalex-snapshot
Effects of a probiotic suspension Symprove™ on a rat early-stage Parkinson’s disease model
inferred← citeshttps://doi.org/10.3389/fnbeh.2021.642757openalex-snapshot
Lactobacillus-Based Probiotics Reduce the Adverse Effects of Stress in Rodents: A Meta-analysis
inferred← citeshttps://doi.org/10.3389/fncel.2021.718324openalex-snapshot
Modulation of Glial Function in Health, Aging, and Neurodegenerative Disease
showing the first 200 of 272 · page through all 272
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.