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Phylogenomics of the Andean Tetraploid Clade of the American Amaryllidaceae (Subfamily Amaryllidoideae): Unlocking a Polyploid Generic Radiation Abetted by Continental Geodynamics

https://doi.org/10.3389/fpls.2020.582422

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Outgoing claims: the papers this work cites, builds on, or argues with.

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THE SEED OF THE SPIDER LILY, HYMENOCALLIS OCCIDENTALS

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NOTE ON PHOTOSYNTHETIC ACTIVITY IN SEEDS OF THE SPIDER LILY

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POLLEN TETRADS IN STENOMESSON ELWESII (AMARYLLIDACEAE)

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CHROMOSOME CYTOLOGY OF EUCHARIS, CALIPHRURIA, AND URCEOLINA (AMARYLLIDACEAE)

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Evolution by Gene Duplication

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Phytomorphic representations of the ancient Peruvians

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Phylogenetic Relationships of Amaryllidaceae Based on matK Sequence Data

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The rediscovery of Griffinia alba (Amaryllidaceae), a poorly known and endangered species

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Late Eocene marine incursion in north-western South America

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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters

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Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach

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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

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Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

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Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms

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Modeling Hybridization Under the Network Multispecies Coalescent

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Historical climate change and speciation: neotropical seasonally dry forest plants show patterns of both Tertiary and Quaternary diversification

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Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment

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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

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Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]

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Genetic structure of the threatenedPhaedranassa schizantha(Amaryllidaceae)

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Phylogeny and historical biogeography of the cocosoid palms ( A recaceae, A recoideae, C ocoseae) inferred from sequences of six WRKY gene family loci

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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

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A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae

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Cenozoic colonization and diversification patterns of tropical American palms: evidence fromAstrocaryum(Arecaceae)

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Biogeographical patterns of plants in the Neotropics - dispersal rather than plate tectonics is most explanatory

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Evolutionary islands in the Andes: persistence and isolation explain high endemism in Andean dry tropical forests

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The history of Seasonally Dry Tropical Forests in eastern South America: inferences from the genetic structure of the tree Astronium urundeuva (Anacardiaceae)

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The on‐again, off‐again relationship between mitochondrial genomes and species boundaries

inferredcites →https://doi.org/10.1111/nph.12956openalex-snapshot

Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, P opulus balsamifera and P . trichocarpa ( S alicaceae)

inferredcites →https://doi.org/10.1111/nph.15099openalex-snapshot

Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)

inferredcites →https://doi.org/10.1111/nph.15386openalex-snapshot

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers ( Helianthus )

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The corona of the daffodil Narcissus bulbocodium shares stamen‐like identity and is distinct from the orthodox floral whorls

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Rise of the Andes

inferredcites →https://doi.org/10.1126/science.1194585openalex-snapshot

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

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The Evolutionary Fate and Consequences of Duplicate Genes

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Andean tectonics as a cause for changing drainage patterns in Miocene northern South America

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High-Throughput Genomic Data in Systematics and Phylogenetics

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A new species of Clinanthus (Amaryllidaceae: Amaryllidoideae: Clinantheae) from Cordillera de los Tarros, Northwest Peru, and notes on related species

inferredcites →https://doi.org/10.11646/zootaxa.3782.1.1openalex-snapshot

Biogeographical regionalisation of the Neotropical region

inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot

BLAST+: architecture and applications

inferredcites →https://doi.org/10.1186/1471-2148-12-182openalex-snapshot

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inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0007353openalex-snapshot

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

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A Simple and Robust Statistical Test for Detecting the Presence of Recombination

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inferredcites →https://doi.org/10.15381/rpb.v13i1.1765openalex-snapshot

Alstroemeriaceae en Perú y áreas vecinas

inferredcites →https://doi.org/10.15381/rpb.v13i2.1938openalex-snapshot

Amaryllidaceae endémicas del Perú

inferredcites →https://doi.org/10.1600/0363644041744400openalex-snapshot

Pucara (Amaryllidaceae) Reduced to Synonymy with Stenomesson on the Basis of Nuclear and Plastid DNA Spacer Sequences, and a New Related Species of Stenomesson

inferredcites →https://doi.org/10.1600/036364406775971787openalex-snapshot

Phylogenetic Relationships and Biogeography within the Eurasian Clade of Amaryllidaceae Based on Plastid ndhF and nrDNA ITS Sequences: Lineage Sorting in a Reticulate Area?

inferredcites →https://doi.org/10.1600/036364414x678099openalex-snapshot

Testing Deep Reticulate Evolution in Amaryllidaceae Tribe Hippeastreae (Asparagales) with ITS and Chloroplast Sequence Data

inferredcites →https://doi.org/10.1600/036364418x697382openalex-snapshot

DNA Sequence Variation among Conspecific Accessions of the Legume Coursetia caribaea Reveals Geographically Localized Clades Here Ranked as Species

inferredcites →https://doi.org/10.1600/036364419x15562052252199openalex-snapshot

New and Reassessed Species of Griffinia (Amaryllidaceae) from the Brazilian Atlantic Forest

inferredcites →https://doi.org/10.1657/1938-4246-46.4.811openalex-snapshot

Biodiversity Patterns and Continental Insularity in the Tropical High Andes

inferredcites →https://doi.org/10.1663/0006-8101(2002)068[0038:ootbot]2.0.co;2openalex-snapshot

Observations on the Biogeography of the Amotape-Huancabamba Zone in Northern Peru

inferredcites →https://doi.org/10.17660/actahortic.2005.673.22openalex-snapshot

HYMENOCALLIS SALISB. GERMINATION VARIANTS AND SEEDLING YIELD

inferredcites →https://doi.org/10.20324/nelumbo/v4/1962/76460openalex-snapshot

Cytotaxonomy of Amaryllidaceae

inferredcites →https://doi.org/10.2179/09-012.1openalex-snapshot

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inferredcites →https://doi.org/10.2307/2395198openalex-snapshot

Some Aspects of Plant Geography of the Northern Hemisphere During the Late Cretaceous and Tertiary

inferredcites →https://doi.org/10.2307/2398789openalex-snapshot

The Systematics and Evolution of Fuchsia Sect. Fuchsia (onagraceae)

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inferredcites →https://doi.org/10.2307/2399347openalex-snapshot

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inferredcites →https://doi.org/10.2307/2418883openalex-snapshot

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inferredcites →https://doi.org/10.2307/2436880openalex-snapshot

The Seed of the Spider Lily, Hymenocallis Occidentalis

inferredcites →https://doi.org/10.2307/25065862openalex-snapshot

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inferredcites →https://doi.org/10.2307/2517445openalex-snapshot

Chavin and the Origins of Andean Civilization.

inferredcites →https://doi.org/10.2307/2656780openalex-snapshot

Systematics of Amaryllidaceae based on cladistic analysis of plastid sequence data

inferredcites →https://doi.org/10.2307/2666729openalex-snapshot

Phylogeny of the American Amaryllidaceae Based on nrDNA ITS Sequences

inferredcites →https://doi.org/10.2307/2806243openalex-snapshot

A New Species and a New Combination in the Genus Eucrosia (Amaryllidaceae)

inferredcites →https://doi.org/10.2307/2806286openalex-snapshot

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inferredcites →https://doi.org/10.2307/2807573openalex-snapshot

The Rediscovery of Plagiolirion horsmannii Baker (Amaryllidaceae)

inferredcites →https://doi.org/10.2307/3298600openalex-snapshot

Phylogeny of the Tribe Hymenocallideae (Amaryllidaceae) Based on Morphology and Molecular Characters

inferredcites →https://doi.org/10.2307/3647354openalex-snapshot

Nomenclature of Hymenocallis taxa ( Amaryllidaceae ) in southeastern United States

inferredcites →https://doi.org/10.3389/fevo.2014.00027openalex-snapshot

Phylogenetic insights into Andean plant diversification

inferredcites →https://doi.org/10.3389/fgene.2014.00351openalex-snapshot

Diversity patterns of selected Andean plant groups correspond to topography and habitat dynamics, not orogeny

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Target Capture Sequencing Unravels Rubus Evolution

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1186/s12870-025-06073-0openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/life16071139openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/plants11243549openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/plants15172553openalex-snapshot

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inferred← citeshttps://doi.org/10.7717/peerj.12400openalex-snapshot

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