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New plastome structural rearrangements discovered in core Tillandsioideae (Bromeliaceae) support recently adopted taxonomy

https://doi.org/10.3389/fpls.2022.924922

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat

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An update on chloroplast genomes

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Setting the evolutionary timeline: Tillandsia landbeckii in the Chilean Atacama Desert

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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

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Loss of the Acetyl-CoA Carboxylase (accD) Gene in Poales

inferredcites →https://doi.org/10.1007/s11295-015-0892-8openalex-snapshot

Complete chloroplast genome sequence of pineapple (Ananas comosus)

inferredcites →https://doi.org/10.1016/bs.abr.2017.11.013openalex-snapshot

Structural Diversity Among Plastid Genomes of Land Plants

inferredcites →https://doi.org/10.1016/j.ympev.2007.06.004openalex-snapshot

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)

inferredcites →https://doi.org/10.1016/j.ympev.2012.03.015openalex-snapshot

Molecular phylogenetics of the Brazilian giant bromeliads (Alcantarea, Bromeliaceae): implications for morphological evolution and biogeography

inferredcites →https://doi.org/10.1016/j.ympev.2013.10.010openalex-snapshot

Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae

inferredcites →https://doi.org/10.1038/301092a0openalex-snapshot

Chloroplast DNA exists in two orientations

inferredcites →https://doi.org/10.1073/pnas.0709121104openalex-snapshot

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

inferredcites →https://doi.org/10.1073/pnas.84.24.9054openalex-snapshot

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

inferredcites →https://doi.org/10.1073/pnas.91.15.6795openalex-snapshot

Rates and patterns of chloroplast DNA evolution.

inferredcites →https://doi.org/10.1080/10635150701311362openalex-snapshot

Profiling Phylogenetic Informativeness

inferredcites →https://doi.org/10.1080/17550874.2019.1566409openalex-snapshot

Bat pollination in Bromeliaceae

inferredcites →https://doi.org/10.1080/23802359.2016.1174084openalex-snapshot

The complete pineapple (Ananas comosus; Bromeliaceae) varieties F153 chloroplast genome sequence

inferredcites →https://doi.org/10.1080/23802359.2021.1997122openalex-snapshot

Chloroplast genome of Tillandsia landbeckii Phil. (Bromeliaceae) a species adapted to the hyper-arid conditions of the Atacama and Peruvian desert

inferredcites →https://doi.org/10.1080/23802359.2022.2039081openalex-snapshot

The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal

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Floral convergence in Oncidiinae (Cymbidieae; Orchidaceae): an expanded concept of Gomesa and a new genus Nohawilliamsia

inferredcites →https://doi.org/10.1093/aob/mcu031openalex-snapshot

First record of bat-pollination in the species-rich genus Tillandsia (Bromeliaceae)

inferredcites →https://doi.org/10.1093/bib/bbs012openalex-snapshot

Using Tablet for visual exploration of second-generation sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btv383openalex-snapshot

Bandage: interactive visualization of de novo genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btx198openalex-snapshot

MISA-web: a web server for microsatellite prediction

inferredcites →https://doi.org/10.1093/bioinformatics/bty633openalex-snapshot

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

inferredcites →https://doi.org/10.1093/botlinnean/boac020openalex-snapshot

Phylogenetic relationships and evolutionary trends in Tillandsia subgenus Diaphoranthema and xerophytic species of subgenus Phytarrhiza (Bromeliaceae: Tillandsioideae)

inferredcites →https://doi.org/10.1093/botlinnean/boz038openalex-snapshot

Historical biogeography of a Brazilian lineage of Tillandsioideae (subtribe Vrieseinae, Bromeliaceae): the Paranaean Sea hypothesized as the main vicariant event

inferredcites →https://doi.org/10.1093/botlinnean/boz085openalex-snapshot

Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

inferredcites →https://doi.org/10.1093/botlinnean/boz102openalex-snapshot

Systematics of Vriesea (Bromeliaceae): phylogenetic relationships based on nuclear gene and partial plastome sequences

inferredcites →https://doi.org/10.1093/gbe/evw167openalex-snapshot

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/gkw413openalex-snapshot

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1101/086298openalex-snapshot

Anchored Phylogenomics of Angiosperms I: Assessing the Robustness of Phylogenetic Estimates

inferredcites →https://doi.org/10.1104/pp.123.4.1337openalex-snapshot

Targeted Inactivation of the Plastid ndhB Gene in Tobacco Results in an Enhanced Sensitivity of Photosynthesis to Moderate Stomatal Closure

inferredcites →https://doi.org/10.1111/1755-0998.13523openalex-snapshot

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

inferredcites →https://doi.org/10.1111/boj.12400openalex-snapshot

Disentangling theTillandsia capillariscomplex: phylogenetic relationships and taxon boundaries in Andean populations

inferredcites →https://doi.org/10.1111/boj.12425openalex-snapshot

Phylogenetics and evolution of theTillandsia utriculatacomplex (Bromeliaceae, Tillandsioideae) inferred from three plastid DNA markers and the ETS of the nuclear ribosomal DNA

inferredcites →https://doi.org/10.1111/j.1095-8339.2011.01194.xopenalex-snapshot

Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets

inferredcites →https://doi.org/10.1111/j.1095-8339.2012.01325.xopenalex-snapshot

The South American radiation ofLepechinia(Lamiaceae): phylogenetics, divergence times and evolution of dioecy

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot

phytools: an R package for phylogenetic comparative biology (and other things)

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Phylogeny and Classification of Prunus sensu lato ( R osaceae)

inferredcites →https://doi.org/10.1111/nph.13743openalex-snapshot

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

inferredcites →https://doi.org/10.1126/science.1163197openalex-snapshot

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

inferredcites →https://doi.org/10.1139/cjb-2016-0250openalex-snapshot

Geographic structure in two highly diverse lineages of Tillandsia (Bromeliaceae)

inferredcites →https://doi.org/10.11646/phytotaxa.279.1.1openalex-snapshot

Taxonomic revision of Bromeliaceae subfam. Tillandsioideae based on a multi-locus DNA sequence phylogeny and morphology

inferredcites →https://doi.org/10.11646/phytotaxa.299.1.1openalex-snapshot

Waltillia, a new monotypic genus in Tillandsioideae (Bromeliaceae) arises from a rediscovered, allegedly extinct species from Brazil

inferredcites →https://doi.org/10.1186/1471-2148-14-23openalex-snapshot

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

inferredcites →https://doi.org/10.1186/1741-7007-7-84openalex-snapshot

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

inferredcites →https://doi.org/10.1186/s12870-015-0484-7openalex-snapshot

NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss

inferredcites →https://doi.org/10.1186/s12870-015-0587-1openalex-snapshot

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae

inferredcites →https://doi.org/10.1186/s12915-021-01166-2openalex-snapshot

Plastid phylogenomic insights into relationships of all flowering plant families

inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

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Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms

inferredcites →https://doi.org/10.1371/journal.pone.0089543openalex-snapshot

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

inferredcites →https://doi.org/10.1371/journal.pone.0187199openalex-snapshot

The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis

inferredcites →https://doi.org/10.1600/036364409789271290openalex-snapshot

Phylogenetic Relationships of Pinus Subsection Ponderosae Inferred from Rapidly Evolving cpDNA Regions

inferredcites →https://doi.org/10.1600/036364410790862632openalex-snapshot

Phylogenetic Relationships of the Pseudobulbous Tillandsia species (Bromeliaceae) Inferred from Cladistic Analyses of ITS 2, 5.8S Ribosomal RNA Gene, and ETS Sequences

inferredcites →https://doi.org/10.1600/036364415x689159openalex-snapshot

Three New Species of Mormolyca (Orchidaceae: Maxillariinae) with an Updated Molecular Phylogenetic Analysis

inferredcites →https://doi.org/10.2307/2419461openalex-snapshot

Phylogenetic Relationships in Subfamily Tillandsioideae (Bromeliaceae) Using ndhF Sequences

inferredcites →https://doi.org/10.3389/fevo.2021.668281openalex-snapshot

Genome Skimming Reveals Widespread Hybridization in a Neotropical Flowering Plant Radiation

inferredcites →https://doi.org/10.3389/fpls.2019.00205openalex-snapshot

What Do Nectarivorous Bats Like? Nectar Composition in Bromeliaceae With Special Emphasis on Bat-Pollinated Species

inferredcites →https://doi.org/10.3389/fpls.2019.01761openalex-snapshot

Target Nuclear and Off-Target Plastid Hybrid Enrichment Data Inform a Range of Evolutionary Depths in the Orchid Genus Epidendrum

inferredcites →https://doi.org/10.3389/fpls.2021.824672openalex-snapshot

Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales

inferredcites →https://doi.org/10.3732/ajb.1500299openalex-snapshot

Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes

inferredcites →https://doi.org/10.3732/ajb.92.2.337openalex-snapshot

Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions

inferredcites →https://doi.org/10.3732/ajb.94.3.275openalex-snapshot

Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

inferredcites →https://doi.org/10.5642/aliso.20072301.04openalex-snapshot

Phylogeny, Adaptive Radiation, and Historical Biogeography of Bromeliaceae Inferred from ndhF Sequence Data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.607.1.1zenodo-depositor-declared

Viridantha minuscula (Tillandsioideae; Bromeliaceae), a new species from Guanajuato, Mexico

inferred← citeshttps://doi.org/10.1002/ajb2.70229openalex-snapshot

Phylogenomics confirm the monophyly of Guzmania (Bromeliaceae: Tillandsioideae) and provide evidence regarding alternative hybridization scenarios involving G. monostachia

inferred← citeshttps://doi.org/10.1007/s00239-024-10224-6openalex-snapshot

Exploring Structural Plastome Evolution in Asterales: Insights from Off-Target Hybrid Enrichment Data on the Small Single-Copy Region

inferred← citeshttps://doi.org/10.1007/s00606-024-01923-0openalex-snapshot

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inferred← citeshttps://doi.org/10.1007/s10528-025-11248-3openalex-snapshot

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inferred← citeshttps://doi.org/10.1007/s13237-025-00554-1openalex-snapshot

Evolutionary dynamics of plastomes within Arisaema (Araceae)

inferred← citeshttps://doi.org/10.1093/jcbiol/ruad033openalex-snapshot

The complete mitochondrial genome of the freshwater crab Tzotzilthelphusa villarosalensis Villalobos & Álvarez, 2013 (Brachyura: Decapoda: Pseudothelphusidae: Raddausinae) from Mexico

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The power to resolve relationships: identifying incongruence and precision of reduced representation and genome-wide data in phylogenomics and population genomics

inferred← citeshttps://doi.org/10.1111/jse.13004openalex-snapshot

Expansions and contractions of the inverted repeat, as well as gene loss and potential pseudogenization shape plastome evolution in Hechtioideae (Bromeliaceae, Poales)

inferred← citeshttps://doi.org/10.1111/nph.70364openalex-snapshot

Beyond conservation: the landscape of chloroplast genome rearrangements in angiosperms

inferred← citeshttps://doi.org/10.11646/phytotaxa.607.1openalex-snapshot

inferred← citeshttps://doi.org/10.1186/s12870-025-06569-9openalex-snapshot

Comparative plastome analyses and phylogenetic insights of Elatostema

inferred← citeshttps://doi.org/10.1186/s12915-024-01890-5openalex-snapshot

Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales

inferred← citeshttps://doi.org/10.3389/fpls.2023.1205511openalex-snapshot

Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage

inferred← citeshttps://doi.org/10.3389/fpls.2026.1822909openalex-snapshot

The different routes of parallel evolution in epiarenic growth in a hyperarid desert environment

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