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Microbial Signatures in Fertile Soils Under Long-Term N Management
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Quality Control of RNA-Seq Experiments
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16S rRNA Gene Analysis with QIIME2
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10 Mycorrhizal Fungi and the Soil Carbon and Nutrient Cycling
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Natural Products of the Fungal Genus Humicola: Diversity, Biological Activity, and Industrial Importance
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Detection and analysis of elusive members of a novel and diverse archaeal community within a thermal spring streamer consortium
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Algisphaera agarilytica gen. nov., sp. nov., a novel representative of the class Phycisphaerae within the phylum Planctomycetes isolated from a marine alga
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Environmental barcoding of the ectomycorrhizal fungal genus Cortinarius
inferredcites →https://doi.org/10.1007/s13225-013-0253-6openalex-snapshot
Taxonomy of Ochroconis, genus including opportunistic pathogens on humans and animals
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Changes in soil phosphorus fractions after 9 years of continuous nitrogen addition in a Larix gmelinii plantation
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Biodiversity of the Genus Hypocrea/Trichoderma in Different Habitats
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INSECT- AND OTHER ARTHROPOD-ASSOCIATED FUNGI
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The Importance of the Microbial N Cycle in Soil for Crop Plant Nutrition
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Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China
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Impact of 36 years of nitrogen fertilization on microbial community composition and soil carbon cycling-related enzyme activities in rhizospheres and bulk soils in northeast China
inferredcites →https://doi.org/10.1016/j.apsoil.2020.103603openalex-snapshot
Crop rotation, but not cover crops, influenced soil bacterial community composition in a corn-soybean system in southern Wisconsin
inferredcites →https://doi.org/10.1016/j.apsoil.2020.103730openalex-snapshot
Long-term residue removal under tillage decreases amoA-nitrifiers and stimulates nirS-denitrifier groups in the soil
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zCompositions — R package for multivariate imputation of left-censored data under a compositional approach
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Ecological distribution and potential roles of Woesearchaeota in anaerobic biogeochemical cycling unveiled by genomic analysis
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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
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Indicators of arable soils fatigue – Bacterial families and genera: A metagenomic approach
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Yields and yield stability of no-till and chisel-plow fields in the Midwestern US Corn Belt
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Detection of N2O-producing fungi in environment using nitrite reductase gene (nirK)-targeting primers
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What is sustainable intensification? Views from experts
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Improved tolerance of maize (Zea mays L.) to heavy metals by colonization of a dark septate endophyte (DSE) Exophiala pisciphila
inferredcites →https://doi.org/10.1016/j.scitotenv.2019.07.154openalex-snapshot
Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes
inferredcites →https://doi.org/10.1016/j.scitotenv.2020.137514openalex-snapshot
Acidification in corn monocultures favor fungi, ammonia oxidizing bacteria, and nirK-denitrifier groups
inferredcites →https://doi.org/10.1016/j.soilbio.2010.06.013openalex-snapshot
Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management
inferredcites →https://doi.org/10.1016/j.soilbio.2012.08.003openalex-snapshot
Different roles of rhizosphere effect and long-term fertilization in the activity and community structure of ammonia oxidizers in a calcareous fluvo-aquic soil
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Crop rotation complexity regulates the decomposition of high and low quality residues
inferredcites →https://doi.org/10.1016/j.soilbio.2015.02.001openalex-snapshot
Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy
inferredcites →https://doi.org/10.1016/j.soilbio.2016.05.014openalex-snapshot
Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea
inferredcites →https://doi.org/10.1016/j.soilbio.2017.07.019openalex-snapshot
Microbial community structure is affected by cropping sequences and poultry litter under long-term no-tillage
inferredcites →https://doi.org/10.1016/j.soilbio.2018.08.024openalex-snapshot
Effect of nitrogen fertilization on the abundance of nitrogen cycling genes in agricultural soils: A meta-analysis of field studies
inferredcites →https://doi.org/10.1016/j.soilbio.2019.04.009openalex-snapshot
Long-term N fertilization altered 13C-labeled fungal community composition but not diversity in wheat rhizosphere of Chinese black soil
inferredcites →https://doi.org/10.1016/j.still.2017.07.007openalex-snapshot
Multivariate assessment of soil quality indicators for crop rotation and tillage in Illinois
inferredcites →https://doi.org/10.1016/j.syapm.2017.11.006openalex-snapshot
Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability
inferredcites →https://doi.org/10.1023/a:1025593121839openalex-snapshot
Nitrous oxide emissions following application of residues and fertiliser under zero and conventional tillage
inferredcites →https://doi.org/10.1038/ismej.2013.34openalex-snapshot
Loss in microbial diversity affects nitrogen cycling in soil
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/s41396-017-0025-5openalex-snapshot
The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions
inferredcites →https://doi.org/10.1038/s41579-018-0024-1openalex-snapshot
Keystone taxa as drivers of microbiome structure and functioning
inferredcites →https://doi.org/10.1038/s41586-018-0386-6openalex-snapshot
Structure and function of the global topsoil microbiome
inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
inferredcites →https://doi.org/10.1038/srep28981openalex-snapshot
Quantitative and compositional responses of ammonia-oxidizing archaea and bacteria to long-term field fertilization
inferredcites →https://doi.org/10.1080/14786419.2021.1919105openalex-snapshot
Genus Thielavia: phytochemicals, industrial importance and biological relevance
inferredcites →https://doi.org/10.1080/14888386.2017.1351892openalex-snapshot
Agriculture and biodiversity: a review
inferredcites →https://doi.org/10.1080/15572536.2005.11832982openalex-snapshot
Molecular Systematics of the Sordariales: The Order and the Family Lasiosphaeriaceae Redefined
inferredcites →https://doi.org/10.1080/15572536.2006.11832703openalex-snapshot
Two new species of Pseudogymnoascus with Geomyces anamorphs and their phylogenetic relationship with Gymnostellatospora
inferredcites →https://doi.org/10.1093/femsec/fiv069openalex-snapshot
Metagenomic analyses reveal no differences in genes involved in cellulose degradation under different tillage treatments
inferredcites →https://doi.org/10.1093/nar/gkt1244openalex-snapshot
Ribosomal Database Project: data and tools for high throughput rRNA analysis
inferredcites →https://doi.org/10.1093/nar/gkz342openalex-snapshot
MAFFT-DASH: integrated protein sequence and structural alignment
inferredcites →https://doi.org/10.1098/rsif.2011.0679openalex-snapshot
Microbial diversity affects self-organization of the soil–microbe system with consequences for function
inferredcites →https://doi.org/10.1099/ijs.0.005348-0openalex-snapshot
Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil
inferredcites →https://doi.org/10.1099/ijs.0.014514-0openalex-snapshot
Variovorax ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field
inferredcites →https://doi.org/10.1099/ijs.0.02684-0openalex-snapshot
Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly( -caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas
inferredcites →https://doi.org/10.1099/ijs.0.041012-0openalex-snapshot
Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae
inferredcites →https://doi.org/10.1099/ijs.0.063800-0openalex-snapshot
Thermomonas carbonis sp. nov., isolated from the soil of a coal mine
inferredcites →https://doi.org/10.1099/ijs.0.63672-0openalex-snapshot
Denitratisoma oestradiolicum gen. nov., sp. nov., a 17β-oestradiol-degrading, denitrifying betaproteobacterium
inferredcites →https://doi.org/10.1099/ijs.0.64124-0openalex-snapshot
Pseudolabrys taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from soil
inferredcites →https://doi.org/10.1099/ijs.0.65342-0openalex-snapshot
Steroidobacter denitrificans gen. nov., sp. nov., a steroidal hormone-degrading gammaproteobacterium
inferredcites →https://doi.org/10.1099/ijsem.0.000770openalex-snapshot
Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families
inferredcites →https://doi.org/10.1099/ijsem.0.001617openalex-snapshot
Allostreptomyces psammosilenae gen. nov., sp. nov., an endophytic actinobacterium isolated from the roots of Psammosilene tunicoides and emended description of the family Streptomycetaceae [Waksman and Henrici (1943)AL] emend. Rainey et al. 1997, emend. Kim et al. 2003, emend. Zhi et al. 2009
inferredcites →https://doi.org/10.1099/ijsem.0.001619openalex-snapshot
Thermodesulfitimonas autotrophica gen. nov., sp. nov., a thermophilic, obligate sulfite-reducing bacterium isolated from a terrestrial hot spring
inferredcites →https://doi.org/10.1099/ijsem.0.002619openalex-snapshot
Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes
inferredcites →https://doi.org/10.1099/ijsem.0.002786openalex-snapshot
LPSN – List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on
inferredcites →https://doi.org/10.1099/mic.0.27303-0openalex-snapshot
Nitrate reduction and the nitrogen cycle in archaea
inferredcites →https://doi.org/10.1111/1462-2920.13282openalex-snapshot
Archaea produce lower yields of N 2 O than bacteria during aerobic ammonia oxidation in soil
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A new method for non‐parametric multivariate analysis of variance
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Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.05005-11openalex-snapshot
Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil
inferredcites →https://doi.org/10.1128/aem.71.7.4117-4120.2005openalex-snapshot
Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays
inferredcites →https://doi.org/10.1139/cjm-2015-0821openalex-snapshot
Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data
inferredcites →https://doi.org/10.1186/s40168-018-0488-2openalex-snapshot
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
inferredcites →https://doi.org/10.1186/s40168-020-00875-0openalex-snapshot
Microbiome definition re-visited: old concepts and new challenges
inferredcites →https://doi.org/10.1186/s40168-020-00985-9openalex-snapshot
Specialized metabolic functions of keystone taxa sustain soil microbiome stability
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The positive false discovery rate: a Bayesian interpretation and the q-value
inferredcites →https://doi.org/10.1371/journal.pone.0230157openalex-snapshot
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils
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Dark Septate Endophyte Improves Drought Tolerance in Sorghum
inferredcites →https://doi.org/10.2134/agronj14.0465openalex-snapshot
Crop Rotation and Tillage Effects on Soil Physical and Chemical Properties in Illinois
inferredcites →https://doi.org/10.2134/agronj2008.0173xopenalex-snapshot
Growth and Nitrogen Fixation in High‐Yielding Soybean: Impact of Nitrogen Fertilization
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Identifying Factors Controlling the Continuous Corn Yield Penalty
inferredcites →https://doi.org/10.2134/agronj2017.11.0633openalex-snapshot
Short Corn Rotations Do Not Improve Soil Quality, Compared with Corn Monocultures
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Management and Crop Residue Influence Soil Aggregate Stability
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Fungi Associated with Populations of Heterodera glycines in Two Illinois Soybean Fields
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dplyr: A Grammar of Data Manipulation
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Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH
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Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments
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Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon
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The Ecology of Acidobacteria: Moving beyond Genes and Genomes
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Microbiome Datasets Are Compositional: And This Is Not Optional
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Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
inferredcites →https://doi.org/10.3389/fmicb.2018.00386openalex-snapshot
Mycobiome of Cysts of the Soybean Cyst Nematode Under Long Term Crop Rotation
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Diversity and Applications of Endophytic Actinobacteria of Plants in Special and Other Ecological Niches
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Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
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Recent Understanding of Soil Acidobacteria and Their Ecological Significance: A Critical Review
inferredcites →https://doi.org/10.3390/agriculture8050062openalex-snapshot
Exploring the Relationships between Greenhouse Gas Emissions, Yields, and Soil Properties in Cropping Systems
inferredcites →https://doi.org/10.3390/microorganisms8111773openalex-snapshot
Microbial Shifts Following Five Years of Cover Cropping and Tillage Practices in Fertile Agroecosystems
inferredcites →https://doi.org/10.3390/microorganisms9061244openalex-snapshot
Soil Microbial Indicators within Rotations and Tillage Systems
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Additional file 1 of Nutrient availability and plant phenological stage influence the substrate microbiome in container-grown Impatiens walleriana ‘Xtreme Red’
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Additional file 2 of Nutrient availability and plant phenological stage influence the substrate microbiome in container-grown Impatiens walleriana ‘Xtreme Red’
inferred← citeshttps://doi.org/10.6084/m9.figshare.26689616openalex-snapshot
Additional file 3 of Nutrient availability and plant phenological stage influence the substrate microbiome in container-grown Impatiens walleriana ‘Xtreme Red’
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