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‘SRS’ R Package and ‘q2-srs’ QIIME 2 Plugin: Normalization of Microbiome Data Using Scaling with Ranked Subsampling (SRS)
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1038/nature11053openalex-snapshot
Human gut microbiome viewed across age and geography
inferredcites →https://doi.org/10.1038/nrmicro.2017.87openalex-snapshot
Embracing the unknown: disentangling the complexities of the soil microbiome
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Ecology and evolution of seafloor and subseafloor microbial communities
inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
inferredcites →https://doi.org/10.1093/nar/gkab1009openalex-snapshot
AMDB: a database of animal gut microbial communities with manually curated metadata
inferredcites →https://doi.org/10.1128/mbio.00525-18openalex-snapshot
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research
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Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord
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Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures
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Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
inferredcites →https://doi.org/10.3390/microorganisms9030589openalex-snapshot
Relative Abundances of Species or Sequence Variants Can Be Misleading: Soil Fungal Communities as an Example
inferredcites →https://doi.org/10.7717/peerj.9593openalex-snapshot
Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.178840openalex-snapshot
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Association of the oral microbiota dynamics with complications and outcomes in allogeneic hematopoietic stem cell transplant
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Lasting shift in the gut microbiota in patients with acute myeloid leukemia
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inferred← citeshttps://doi.org/10.1186/s42523-025-00464-2openalex-snapshot
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inferred← citeshttps://doi.org/10.21203/rs.3.rs-3257437/v1openalex-snapshot
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inferred← citeshttps://doi.org/10.21203/rs.3.rs-4243329/v1openalex-snapshot
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Dental biofilm serves as an ecological reservoir of acid-producer pathogens in head and neck cancer patients with radiotherapy-related caries
inferred← citeshttps://doi.org/10.32614/cran.package.srsopenalex-snapshot
SRS: Scaling with Ranked Subsampling
inferred← citeshttps://doi.org/10.3389/fcimb.2022.862338openalex-snapshot
Choice of 16S Ribosomal RNA Primers Impacts Male Urinary Microbiota Profiling
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inferred← citeshttps://doi.org/10.3389/fmicb.2024.1330865openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fmicb.2024.1371292openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fmicb.2025.1640134openalex-snapshot
Land use change has profoundly altered the process of bacterial community assembly in the northeastern black soil zone
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1830341openalex-snapshot
Diverse banana endophytes reveal potential genotype-driven community structure affected by domestication
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Dynamics of Gut Microbiota and Clinical Variables after Ketogenic and Mediterranean Diets in Drug-Naïve Patients with Type 2 Diabetes Mellitus and Obesity
inferred← citeshttps://doi.org/10.3390/metabo15010022openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/microorganisms13061298openalex-snapshot
Variations in the Structure and Composition of Soil Microbial Communities of Different Forests in the Daxing’anling Mountains, Northeastern China
inferred← citeshttps://doi.org/10.3390/nu16121971openalex-snapshot
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inferred← citeshttps://doi.org/10.6084/m9.figshare.26143740openalex-snapshot
Additional file 1 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26143787openalex-snapshot
Additional file 2 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26741126openalex-snapshot
Additional file 3 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26741129openalex-snapshot
Additional file 4 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26741132openalex-snapshot
Additional file 5 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26741135openalex-snapshot
Additional file 6 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
inferred← citeshttps://doi.org/10.6084/m9.figshare.26741138openalex-snapshot
Additional file 7 of Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
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