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Phylogenomic Analysis of Two Species of Parasenecio and Comparative Analysis within Tribe Senecioneae (Asteraceae)

https://doi.org/10.3390/d15040563
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
inferredcites →https://doi.org/10.1007/s10600-021-03316-yopenalex-snapshot
Chemical Constituents of Parasenecio quinquelobus
inferredcites →https://doi.org/10.1007/s11103-011-9762-4openalex-snapshot
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
inferredcites →https://doi.org/10.1007/s12041-022-01360-3openalex-snapshot
The complete chloroplast genome sequence of the monotypic and enigmatic genus Cavea (tribe Gymnarrheneae) and a comparison with other species in Asteraceae
inferredcites →https://doi.org/10.1016/j.bcab.2022.102557openalex-snapshot
Multiplex molecular marker-assisted analysis of significant pathogens of cotton (Gossypium sp.)
inferredcites →https://doi.org/10.1016/j.dib.2017.10.009openalex-snapshot
Illumina sequencing of the chloroplast genome of common ragweed ( Ambrosia artemisiifolia L.)
inferredcites →https://doi.org/10.1016/j.fitote.2021.105093openalex-snapshot
Chlorinated bisabolene sesquiterpenoids from the whole plant of Parasenecio rubescens
inferredcites →https://doi.org/10.1016/j.gene.2015.07.020openalex-snapshot
The complete chloroplast genome sequence of Aster spathulifolius (Asteraceae); genomic features and relationship with Asteraceae
inferredcites →https://doi.org/10.1016/j.ygeno.2019.08.016openalex-snapshot
Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: Comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae
inferredcites →https://doi.org/10.1016/j.ympev.2005.09.010openalex-snapshot
Radiation and diversification within the Ligularia–Cremanthodium–Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau
inferredcites →https://doi.org/10.1016/j.ympev.2018.04.015openalex-snapshot
Comparative chloroplast genomics between the invasive weed Mikania micrantha and its indigenous congener Mikania cordata: Structure variation, identification of highly divergent regions, divergence time estimation, and phylogenetic analysis
inferredcites →https://doi.org/10.1016/j.ympev.2021.107202openalex-snapshot
Development and phylogenetic utilities of a new set of single-/low-copy nuclear genes in Senecioneae (Asteraceae), with new insights into the tribal position and the relationships within subtribe Tussilagininae
inferredcites →https://doi.org/10.1038/nprot.2006.384openalex-snapshot
A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide
inferredcites →https://doi.org/10.1038/s41598-022-11992-1openalex-snapshot
Assessment of genetic diversity and volatile content of commercially grown banana (Musa spp.) cultivars
inferredcites →https://doi.org/10.1038/srep08348openalex-snapshot
ycf1, the most promising plastid DNA barcode of land plants
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/aob/mcaa024openalex-snapshot
Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences
inferredcites →https://doi.org/10.1093/bib/bbx108openalex-snapshot
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv383openalex-snapshot
Bandage: interactive visualization of de novo genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btx198openalex-snapshot
MISA-web: a web server for microsatellite prediction
inferredcites →https://doi.org/10.1093/bioinformatics/bty220openalex-snapshot
IRscope: an online program to visualize the junction sites of chloroplast genomes
inferredcites →https://doi.org/10.1093/botlinnean/box034openalex-snapshot
Generic recircumscription of Parasenecio (Asteraceae: Senecioneae) based on nuclear ribosomal and plastid DNA sequences, with descriptions of two new genera
inferredcites →https://doi.org/10.1093/molbev/msi174openalex-snapshot
Two Chloroplast DNA Inversions Originated Simultaneously During the Early Evolution of the Sunflower Family (Asteraceae)
inferredcites →https://doi.org/10.1093/nar/29.22.4633openalex-snapshot
REPuter: the manifold applications of repeat analysis on a genomic scale
inferredcites →https://doi.org/10.1093/nar/gkh458openalex-snapshot
VISTA: computational tools for comparative genomics
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1098/rstb.2002.1176openalex-snapshot
Evolution of the chloroplast genome
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/jse.12216openalex-snapshot
A comprehensive generic‐level phylogeny of the sunflower family: Implications for the systematics of Chinese Asteraceae
inferredcites →https://doi.org/10.1111/njb.00574openalex-snapshot
Parasenecio chenopodiifolius (Compositae–Senecioneae) is a Synotis and conspecific with S. otophylla based on evidence from morphology, cytology and ITS/ETS sequence data
inferredcites →https://doi.org/10.1111/njb.00715openalex-snapshot
Morphological and cytological data support the independent specific status of Parasenecio delphiniiphyllus (Asteraceae–Senecioneae) from China
inferredcites →https://doi.org/10.1155/2021/9410496openalex-snapshot
Complete Chloroplast Genome Sequence of Sonchus brachyotus Helps to Elucidate Evolutionary Relationships with Related Species of Asteraceae
inferredcites →https://doi.org/10.11646/phytotaxa.283.2.8openalex-snapshot
Parasenecio anhuiensis (Asteraceae, Senecioneae), a new species from eastern China
inferredcites →https://doi.org/10.1186/s12864-020-07219-0openalex-snapshot
Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications
inferredcites →https://doi.org/10.1186/s12864-021-07484-7openalex-snapshot
The complete chloroplast genome of Stauntonia chinensis and compared analysis revealed adaptive evolution of subfamily Lardizabaloideae species in China
inferredcites →https://doi.org/10.1186/s12870-019-1896-6openalex-snapshot
Plastome phylogenomics of Saussurea (Asteraceae: Cardueae)
inferredcites →https://doi.org/10.1186/s13007-019-0435-7openalex-snapshot
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
inferredcites →https://doi.org/10.1186/s40529-019-0265-yopenalex-snapshot
Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics
inferredcites →https://doi.org/10.1371/journal.pone.0168008openalex-snapshot
Complete chloroplast genomes from apomictic Taraxacum (Asteraceae): Identity and variation between three microspecies
inferredcites →https://doi.org/10.2307/25065905openalex-snapshot
An ITS phylogeny of tribe Senecioneae (Asteraceae) and a new delimitation of Senecio L.
inferredcites →https://doi.org/10.30848/pjb2022-3(19)openalex-snapshot
Phylogenetic exploration of traditional Chinese medicinal plants: a case study on Lamiaceae (angiosperms)
inferredcites →https://doi.org/10.3389/fphar.2018.00695openalex-snapshot
Identification of Ligularia Herbs Using the Complete Chloroplast Genome as a Super-Barcode
inferredcites →https://doi.org/10.3389/fphar.2019.01441openalex-snapshot
Species Identification of Dracaena Using the Complete Chloroplast Genome as a Super-Barcode
inferredcites →https://doi.org/10.3389/fpls.2019.00460openalex-snapshot
Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome
inferredcites →https://doi.org/10.3389/fpls.2022.1049209openalex-snapshot
Comparative and phylogenetic analysis of complete chloroplast genomes from five Artemisia species
inferredcites →https://doi.org/10.3390/ijms22179175openalex-snapshot
Molecular Cloning and Functional Analysis of GmLACS2-3 Reveals Its Involvement in Cutin and Suberin Biosynthesis along with Abiotic Stress Tolerance
inferredcites →https://doi.org/10.3390/molecules22081330openalex-snapshot
Complete Chloroplast Genome Sequence and Phylogenetic Analysis of the Medicinal Plant Artemisia annua
inferredcites →https://doi.org/10.3390/plants9050568openalex-snapshot
Comparative Analysis of the Complete Chloroplast Genome of Mainland Aster spathulifolius and Other Aster Species
inferredcites →https://doi.org/10.3732/ajb.1400049openalex-snapshot
Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae)
inferredcites →https://doi.org/10.3732/apps.1400085openalex-snapshot
Plastid primers for angiosperm phylogenetics and phylogeography
inferredcites →https://doi.org/10.5735/085.048.0211openalex-snapshot
A New Species and a New Combination inParasenecio(Asteraceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/phytokeys.248.127117zenodo-depositor-declared
Primula meishanensis (Primulaceae), a new species from Sichuan, China
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Characterization and phylogenetic analysis of the complete chloroplast genome of Saussurea sagittifolia (Asteraceae, Cardueae)
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The complete chloroplast genome of Sinosenecio globigerus (C. C. Chang) B. Nordenstam (Asteraceae)
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Characterization and phylogenetic analysis of the complete chloroplast genome of Carpesium lipskyi (Asteraceae, Inuleae)
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Characterization and phylogenetic analysis of the complete chloroplast genome of Carpesium longifolium F. H. Chen & C. M. Hu (Asteraceae, Inuleae)
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The plastid genome and phylogenetic status of Sinosenecio eriopodus C. Jeffrey & Y. L. Chen 1984 (Asteraceae)
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The complete plastome of Parasenecio lanpingensis (Asteraceae), a new species from Yunnan Province of China
inferred← citeshttps://doi.org/10.1186/s12864-024-10663-xopenalex-snapshot
Comparative analysis of complete chloroplast genomes of Synotis species (Asteraceae, Senecioneae) for identification and phylogenetic analysis
inferred← citeshttps://doi.org/10.1186/s12870-025-07678-1openalex-snapshot
Comparative analysis of butternut (Juglans cinerea) and Japanese walnut (Juglans ailantifolia) chloroplast genomes
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Complete plastome sequences of Lonicera L. species: implications for phylogeny and comparative analysis
inferred← citeshttps://doi.org/10.3389/fgene.2024.1408114openalex-snapshot
Complete chloroplast genomes of two Ainsliaea species and the phylogenetic analysis in the tribe Pertyeae
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Insights into comparative genomics, structural features, and phylogenetic relationship of species from Eurasian Aster and its related genera (Asteraceae: Astereae) based on complete chloroplast genome
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