On the public citation graph

QUBO Problem Formulation of Fragment-Based Protein–Ligand Flexible Docking

https://doi.org/10.3390/e26050397
0 signed · 37 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jcc.21256openalex-snapshot
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
inferredcites →https://doi.org/10.1002/jcc.21334openalex-snapshot
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
inferredcites →https://doi.org/10.1002/jcc.23905openalex-snapshot
DOCK 6: Impact of new features and current docking performance
inferredcites →https://doi.org/10.1006/jmbi.1996.0477openalex-snapshot
A Fast Flexible Docking Method using an Incremental Construction Algorithm
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1016/j.jmgm.2006.06.002openalex-snapshot
eHiTS: A new fast, exhaustive flexible ligand docking system
inferredcites →https://doi.org/10.1021/acs.jcim.0c00675openalex-snapshot
ZINC20─A Free Ultralarge-Scale Chemical Database for Ligand Discovery
inferredcites →https://doi.org/10.1021/acs.jcim.1c00203openalex-snapshot
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
inferredcites →https://doi.org/10.1021/acs.jctc.3c00943openalex-snapshot
Encoding Molecular Docking for Quantum Computers
inferredcites →https://doi.org/10.1021/acs.jctc.8b01026openalex-snapshot
OPLS3e: Extending Force Field Coverage for Drug-Like Small Molecules
inferredcites →https://doi.org/10.1021/acsomega.2c03470openalex-snapshot
Effective Protein–Ligand Docking Strategy via Fragment Reuse and a Proof-of-Concept Implementation
inferredcites →https://doi.org/10.1021/ci050420dopenalex-snapshot
Knowledge-Based Interaction Fingerprint Scoring: A Simple Method for Improving the Effectiveness of Fast Scoring Functions
inferredcites →https://doi.org/10.1021/ci100436popenalex-snapshot
FRED Pose Prediction and Virtual Screening Accuracy
inferredcites →https://doi.org/10.1021/ci3001277openalex-snapshot
ZINC: A Free Tool to Discover Chemistry for Biology
inferredcites →https://doi.org/10.1021/ja00051a040openalex-snapshot
UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
inferredcites →https://doi.org/10.1021/ja9621760openalex-snapshot
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
inferredcites →https://doi.org/10.1021/jm0306430openalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm030644sopenalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
inferredcites →https://doi.org/10.1023/a:1011365314563openalex-snapshot
A Neuro-Based Optimization Algorithm for Tiling Problems with Rotation
inferredcites →https://doi.org/10.1063/5.0016140openalex-snapshot
Coherent Ising machines—Quantum optics and neural network Perspectives
inferredcites →https://doi.org/10.1093/bioinformatics/btx178openalex-snapshot
Spresso: an ultrafast compound pre-screening method based on compound decomposition
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1093/nar/gku1214openalex-snapshot
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
inferredcites →https://doi.org/10.1109/access.2023.3316727openalex-snapshot
Pairs-Trading System Using Quantum-Inspired Combinatorial Optimization Accelerator for Optimal Path Search in Market Graphs
inferredcites →https://doi.org/10.1126/sciadv.aav2372openalex-snapshot
Combinatorial optimization by simulating adiabatic bifurcations in nonlinear Hamiltonian systems
inferredcites →https://doi.org/10.1126/sciadv.aax1950openalex-snapshot
Molecular docking with Gaussian Boson Sampling
inferredcites →https://doi.org/10.1371/journal.pcbi.1003571openalex-snapshot
rDock: A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids
inferredcites →https://doi.org/10.3389/fphy.2019.00048openalex-snapshot
Physics-Inspired Optimization for Quadratic Unconstrained Problems Using a Digital Annealer
inferredcites →https://doi.org/10.3389/fphy.2021.760783openalex-snapshot
Solving the Traveling Salesman Problem on the D-Wave Quantum Computer
inferredcites →https://doi.org/10.3390/e18100365openalex-snapshot
Boltzmann Sampling by Degenerate Optical Parametric Oscillator Network for Structure-Based Virtual Screening
inferredcites →https://doi.org/10.3390/e24030354openalex-snapshot
Solving Generalized Polyomino Puzzles Using the Ising Model

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.10889782zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1016/j.patter.2026.101634openalex-snapshot
Hybrid artificial intelligence and quantum annealing as an optimization layer in drug discovery
inferred← citeshttps://doi.org/10.1093/bib/bbag274openalex-snapshot
Quantum computing applications in drug discovery
inferred← citeshttps://doi.org/10.1109/lcomm.2025.3637850openalex-snapshot
Cooperative Sensing and Offloading in NOMA-Based Vehicular Network: A Quantum-Inspired Approach
inferred← citeshttps://doi.org/10.3390/math14142542openalex-snapshot
CAGE-QMol: A Constraint-Aware Quantum-Inspired Optimization Framework for Brain-Penetrant Multi-Target Alzheimer’s Drug Discovery
inferred← citeshttps://doi.org/10.3390/molecules29143256openalex-snapshot
Insight into the Binding Interaction between PEDCs and hERRγ Utilizing Molecular Docking and Molecular Dynamics Simulations
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.