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Evolutionary Divergence and Radula Diversification in Two Ecomorphs from an Adaptive Radiation of Freshwater Snails

https://doi.org/10.3390/genes13061029
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Adaptive radiation of Darwin's finches revisited using whole genome sequencing
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Phenotypic traits meet patterns of resource use in the radiation of “sharpfin” sailfin silverside fish in Lake Matano
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Ancient lakes as hotspots of diversity: a morphological review of an endemic species flock of Tylomelania (Gastropoda: Cerithioidea: Pachychilidae) in the Malili lake system on Sulawesi, Indonesia
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The species flocks of lacustrine gastropods: Tylomelania on Sulawesi as models in speciation and adaptive radiation
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A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods
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De novo assembly and annotation of the European abalone Haliotis tuberculata transcriptome
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The genomics of speciation-with-gene-flow
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Hybridization and adaptive radiation
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A Combinatorial View on Speciation and Adaptive Radiation
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Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation
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Basic Local Alignment Search Tool
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The role of Notch and Rho GTPase signaling in the control of dendritic development
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Rho GTPase-activating proteins in cell regulation
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The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches
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The genomic basis of adaptive evolution in threespine sticklebacks
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Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
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The genomic substrate for adaptive radiation in African cichlid fish
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A non-canonical Notch complex regulates adherens junctions and vascular barrier function
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Ancient hybridization fuels rapid cichlid fish adaptive radiations
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Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes
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De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
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Adaptive evolution and explosive speciation: the cichlid fish model
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Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
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The evolution of signalling pathways in animal development
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Gene expression dynamics during rapid organismal diversification in African cichlid fishes
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Understanding explosive diversification through cichlid fish genomics
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Contrasting signatures of genomic divergence during sympatric speciation
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Genetic and developmental basis of cichlid trophic diversity
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Craniofacial divergence and ongoing adaptation via the hedgehog pathway
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Hedgehog signaling mediates adaptive variation in a dynamic functional system in the cichlid feeding apparatus
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The complete mitochondrial genome of the viviparous freshwater snail Tylomelania sarasinorum (Caenogastropoda: Cerithioidea)
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Tissue patterning and cellular mechanics
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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
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PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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Early Divergence, Broad Distribution, and High Diversity of Animal Chitin Synthases
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Genetic Basis of Adaptive Shape Differences in the Cichlid Head
inferredcites →https://doi.org/10.1093/molbev/msm066openalex-snapshot
The Genetic Architecture of Ecological Speciation and the Association with Signatures of Selection in Natural Lake Whitefish (Coregonus sp. Salmonidae) Species Pairs
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Genomic Response to Selection for Predatory Behavior in a Mammalian Model of Adaptive Radiation
inferredcites →https://doi.org/10.1093/molbev/msy052openalex-snapshot
Novel Genes, Ancient Genes, and Gene Co-Option Contributed to the Genetic Basis of the Radula, a Molluscan Innovation
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NEW DISCOVERIES IN OLD LAKES: THREE NEW SPECIES OF TYLOMELANIA SARASIN & SARASIN, 1897 (GASTROPODA: CERITHIOIDEA: PACHYCHILIDAE) FROM THE MALILI LAKE SYSTEM ON SULAWESI, INDONESIA
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes
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HMMER web server: interactive sequence similarity searching
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The Ecology of Adaptive Radiation
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Escalation and trophic specialization drive adaptive radiation of freshwater gastropods in ancient lakes on Sulawesi, Indonesia
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African cichlid fish: a model system in adaptive radiation research
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Rugged adaptive landscapes shape a complex, sympatric radiation
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Baby fish working out: an epigenetic source of adaptive variation in the cichlid jaw
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Waiting in the wings: what can we learn about gene co-option from the diversification of butterfly wing patterns?
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The Dawn of Developmental Signaling in the Metazoa
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Accuracy of allele frequency estimation using pooled RNA ‐Seq
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geomorph: an r package for the collection and analysis of geometric morphometric shape data
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FUNCTIONAL AND POPULATION GENOMIC DIVERGENCE WITHIN AND BETWEEN TWO SPECIES OF KILLIFISH ADAPTED TO DIFFERENT OSMOTIC NICHES
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Anatomy of an adaptive radiation: a unique reproductive strategy in the endemic freshwater gastropod Tylomelania (Cerithioidea: Pachychilidae) on Sulawesi, Indonesia and its biogeographical implications
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THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?
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Do the same genes underlie parallel phenotypic divergence in different L ittorina saxatilis populations?
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Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?
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Divergence in gene expression within and between two closely related flycatcher species
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The genetic architecture of local adaptation and reproductive isolation in sympatry within the Mimulus guttatus species complex
inferredcites →https://doi.org/10.1111/mec.13805openalex-snapshot
Adaptive genomic divergence under high gene flow between freshwater and brackish‐water ecotypes of prickly sculpin (Cottus asper) revealed by Pool‐Seq
inferredcites →https://doi.org/10.1111/mec.14166openalex-snapshot
The adaptive genomic landscape of beak morphology in Darwin's finches
inferredcites →https://doi.org/10.1111/mec.14277openalex-snapshot
Evolution of novel mimicry rings facilitated by adaptive introgression in tropical butterflies
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Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex
inferredcites →https://doi.org/10.1126/science.1098095openalex-snapshot
Bmp4 and Morphological Variation of Beaks in Darwin's Finches
inferredcites →https://doi.org/10.1126/science.1128374openalex-snapshot
Evolution of Character Displacement in Darwin's Finches
inferredcites →https://doi.org/10.1126/science.1158997openalex-snapshot
Is Genetic Evolution Predictable?
inferredcites →https://doi.org/10.1126/science.359.6372.172-dopenalex-snapshot
Rapid hybrid speciation in Darwin's finches
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Rapid hybrid speciation in Darwin’s finches
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2148-12-94openalex-snapshot
Uninformative polymorphisms bias genome scans for signatures of selection
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks
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A Neutral Model of Transcriptome Evolution
inferredcites →https://doi.org/10.1371/journal.pbio.1001298openalex-snapshot
Cytoneme-Mediated Delivery of Hedgehog Regulates the Expression of Bone Morphogenetic Proteins to Maintain Germline Stem Cells in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1006919openalex-snapshot
Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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Drift and Directional Selection Are the Evolutionary Forces Driving Gene Expression Divergence in Eye and Brain Tissue of Heliconius Butterflies
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On the origin of species by means of natural selection, or, The preservation of favoured races in the struggle for life /

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5852/ejt.2025.1005.2985zenodo-depositor-declared
A new genus of river snails, Bakyietaia (Mollusca, Viviparidae), from South China and the Indochinese Peninsula
inferred← citeshttps://doi.org/10.1007/s10228-023-00908-2openalex-snapshot
A new lacustrine ricefish from central Sulawesi, with a redescription of Oryzias marmoratus (Teleostei: Adrianichthyidae)
inferred← citeshttps://doi.org/10.1007/s10750-022-05064-8openalex-snapshot
Profound and rapid allopatric differentiation of Arctic charr Salvelinus alpinus on a microgeographic scale
inferred← citeshttps://doi.org/10.1063/5.0186326openalex-snapshot
Comparative morphology of cerithioidean radula (Mollusca: Gastropoda) observed using scanning electron microscope
inferred← citeshttps://doi.org/10.1088/1755-1315/1512/1/012002openalex-snapshot
Morphometrics of two Tylomelania gastropods from the Pattunuang River, Maros, South Sulawesi
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Performance of biological food processing interfaces: Perspectives on the science of mollusc radula
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Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.3390/biomimetics11040246openalex-snapshot
Tooth Shape Controls Stiffness and Food Collection Efficiency in Biomimetic Radular Teeth
inferred← citeshttps://doi.org/10.6084/m9.figshare.25566223openalex-snapshot
Additional file 1 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.25566364openalex-snapshot
Additional file 2 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703517openalex-snapshot
Additional file 3 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703520openalex-snapshot
Additional file 4 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703523openalex-snapshot
Additional file 5 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703526openalex-snapshot
Additional file 6 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703529openalex-snapshot
Additional file 7 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703532openalex-snapshot
Additional file 8 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.6084/m9.figshare.26703535openalex-snapshot
Additional file 9 of Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
inferred← citeshttps://doi.org/10.7551/mitpress/13625.001.0001openalex-snapshot
Our Ancient Lakes
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