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Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data on Haliastur indus and Accipiter badius poliopsis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Both Heavy Strand Replication Origins Are Active in Partially Duplicated Human Mitochondrial DNAs
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tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences
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Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
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Sequence and gene organization of the chicken mitochondrial genome
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The ‘effective number of codons’ used in a gene
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Myological variation in the hindlimb of three raptorial birds in relation to foraging behavior
inferredcites →https://doi.org/10.1016/j.gene.2014.12.011openalex-snapshot
The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species
inferredcites →https://doi.org/10.1016/j.ympev.2015.01.013openalex-snapshot
A molecular phylogeny of the harriers (Circus, Accipitridae) indicate the role of long distance dispersal and migration in diversification
inferredcites →https://doi.org/10.1016/j.ympev.2015.08.011openalex-snapshot
Rearrangement and evolution of mitochondrial genomes in parrots
inferredcites →https://doi.org/10.1016/j.ympev.2016.09.026openalex-snapshot
Gene duplication and concerted evolution of mitochondrial DNA in crane species
inferredcites →https://doi.org/10.1016/s0531-5565(00)00135-2openalex-snapshot
Uncoupling to survive? The role of mitochondrial inefficiency in ageing
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1073/pnas.85.8.2653openalex-snapshot
Directional mutation pressure and neutral molecular evolution.
inferredcites →https://doi.org/10.1074/jbc.m308028200openalex-snapshot
Mammalian Mitochondrial DNA Replicates Bidirectionally from an Initiation Zone
inferredcites →https://doi.org/10.1074/jbc.m411916200openalex-snapshot
Bidirectional Replication Initiates at Sites Throughout the Mitochondrial Genome of Birds
inferredcites →https://doi.org/10.1091/mbc.11.7.2349openalex-snapshot
Maintenance of Human Rearranged Mitochondrial DNAs in Long-Term Cultured Transmitochondrial Cell Lines
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/biolinnean/blae028openalex-snapshot
Enigmas no longer: using ultraconserved elements to place several unusual hawk taxa and address the non-monophyly of the genus Accipiter (Accipitriformes: Accipitridae)
inferredcites →https://doi.org/10.1093/dnares/11.2.115openalex-snapshot
Mitochondrial Genome of the Komodo Dragon: Efficient Sequencing Method with Reptile-Oriented Primers and Novel Gene Rearrangements
inferredcites →https://doi.org/10.1093/ee/37.2.301openalex-snapshot
Flight Performance of the Soybean Aphid,Aphis glycines(Hemiptera: Aphididae) Under Different Temperature and Humidity Regimens
inferredcites →https://doi.org/10.1093/gbe/evab113openalex-snapshot
Convergent Adaptation in Mitochondria of Phylogenetically Distant Birds: Does it Exist?
inferredcites →https://doi.org/10.1093/gbe/evab193openalex-snapshot
Mitogenomes of Accipitriformes and Cathartiformes Were Subjected to Ancestral and Recent Duplications Followed by Gradual Degeneration
inferredcites →https://doi.org/10.1093/gbe/evz209openalex-snapshot
Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications
inferredcites →https://doi.org/10.1093/genetics/146.3.1035openalex-snapshot
Evolution of Repeated Sequence Arrays in the D-Loop Region of Bat Mitochondrial DNA
inferredcites →https://doi.org/10.1093/molbev/msab120openalex-snapshot
MEGA11: Molecular Evolutionary Genetics Analysis Version 11
inferredcites →https://doi.org/10.1093/molbev/msl158openalex-snapshot
Mitochondrial Genomes and Avian Phylogeny: Complex Characters and Resolvability without Explosive Radiations
inferredcites →https://doi.org/10.1093/molbev/msn031openalex-snapshot
Phylogeny, Recombination, and Mechanisms of Stepwise Mitochondrial Genome Reorganization in Mantellid Frogs from Madagascar
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
inferredcites →https://doi.org/10.1093/molbev/msy073openalex-snapshot
DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
inferredcites →https://doi.org/10.1093/molbev/msy189openalex-snapshot
New insight into parrots’ mitogenomes indicates that their ancestor contained a duplicated region
inferredcites →https://doi.org/10.1093/nar/10.22.7055openalex-snapshot
Codon usage in bacteria: correlation with gene expressivity
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkab301openalex-snapshot
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot
MEME SUITE: tools for motif discovery and searching
inferredcites →https://doi.org/10.1093/nar/gkt628openalex-snapshot
Graph-based modeling of tandem repeats improves global multiple sequence alignment
inferredcites →https://doi.org/10.1093/nar/gkz173openalex-snapshot
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025690openalex-snapshot
Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1111/imb.12501openalex-snapshot
Evolutionary divergence of mitochondrial genomes in two Tetranychus species distributed across different climates
inferredcites →https://doi.org/10.1146/annurev.genet.39.110304.095751openalex-snapshot
A Mitochondrial Paradigm of Metabolic and Degenerative Diseases, Aging, and Cancer: A Dawn for Evolutionary Medicine
inferredcites →https://doi.org/10.1163/156853806776052038openalex-snapshot
Variable number tandem repeats in the mitochondrial DNA Control region of the Chinese alligator, Alligator sinensis
inferredcites →https://doi.org/10.1186/1471-2164-12-35openalex-snapshot
Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination
inferredcites →https://doi.org/10.1186/s12862-017-0896-0openalex-snapshot
Selection on the mitochondrial ATP synthase 6 and the NADH dehydrogenase 2 genes in hares (Lepus capensis L., 1758) from a steep ecological gradient in North Africa
inferredcites →https://doi.org/10.1186/s12864-020-07284-5openalex-snapshot
New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0007999openalex-snapshot
Predatory Functional Morphology in Raptors: Interdigital Variation in Talon Size Is Related to Prey Restraint and Immobilisation Technique
inferredcites →https://doi.org/10.1371/journal.pone.0082854openalex-snapshot
Recombination and Evolution of Duplicate Control Regions in the Mitochondrial Genome of the Asian Big-Headed Turtle, Platysternon megacephalum
inferredcites →https://doi.org/10.1371/journal.pone.0136297openalex-snapshot
The Mitochondrial Genomes of Aquila fasciata and Buteo lagopus (Aves, Accipitriformes): Sequence, Structure and Phylogenetic Analyses
inferredcites →https://doi.org/10.1371/journal.pone.0141037openalex-snapshot
Correction: The Mitochondrial Genomes of Aquila fasciata and Buteo lagopus (Aves, Accipitriformes): Sequence, Structure and Phylogenetic Analyses
inferredcites →https://doi.org/10.1603/0046-225x(2008)37[301:fpotsa]2.0.co;2openalex-snapshot
Flight Performance of the Soybean Aphid, Aphis glycines (Hemiptera: Aphididae) Under Different Temperature and Humidity Regimens
inferredcites →https://doi.org/10.18632/aging.101012openalex-snapshot
Duplication of the mitochondrial control region is associated with increased longevity in birds
inferredcites →https://doi.org/10.32614/cran.package.cubaropenalex-snapshot
cubar: Codon Usage Bias Analysis
inferredcites →https://doi.org/10.4238/2015.october.29.18openalex-snapshot
Molecular barcoding of venomous snakes and species-specific multiplex PCR assay to identify snake groups for which antivenom is available in Thailand
inferredcites →https://doi.org/10.7717/peerj.6121openalex-snapshot
Characterization of five completeCyrtodactylusmitogenome structures reveals low structural diversity and conservation of repeated sequences in the lineage
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/zookeys.1234.138722zenodo-depositor-declared
Complete mitogenome of the critically endangered Asian king vulture (Sarcogyps calvus) (Aves, Accipitriformes, Accipitridae): evolutionary insights and comparative analysis
inferred← citeshttps://doi.org/10.3897/zookeys.1281.158566zenodo-depositor-declared
Endangered Steppe Eagle (Aquila nipalensis) (Aves, Accipitriformes, Accipitridae) genome and mitogenome assembly: A resource for molecular evolution and comparative genomics
inferred← citeshttps://doi.org/10.1038/s41598-026-57251-5openalex-snapshot
GARUDA: the first complete mitochondrial genome of the endangered Javan hawk-eagle (Nisaetus bartelsi) and its phylogenetic relationships within Accipitridae
inferred← citeshttps://doi.org/10.1155/jzs/8718127openalex-snapshot
Cryptic Diversity in the Slender Walking Catfish Inferred From Mitogenomes and DNA Barcodes Reveals a Clarias nieuhofii Species Complex Across Sundaland
inferred← citeshttps://doi.org/10.3390/genes16111284openalex-snapshot
Complete Mitochondrial Genome and Phylogenetic Analysis of Turdus pallidus (Passeriformes, Turdidae)
inferred← citeshttps://doi.org/10.3390/genes17010085openalex-snapshot
Correction: Sonongbua et al. Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data on Haliastur indus and Accipiter badius poliopsis. Genes 2024, 15, 1439
inferred← citeshttps://doi.org/10.3390/genes17010087openalex-snapshot
Contamination of Consensus Sequences in Next-Generation Mitogenomics: The Published Mitochondrial Genome of Haliastur indus Is a Chimera with DNA from Butastur indicus. Comment on Sonongbua et al. Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data on…
inferred← citeshttps://doi.org/10.3390/genes17010088openalex-snapshot
Reply to Sangster, G.; Luksenburg, J.A. Contamination of Consensus Sequences in Next-Generation Mitogenomics: The Published Mitochondrial Genome of Haliastur indus Is a Chimera with DNA from Butastur indicus. Comment on “Sonongbua et al. Insights into Mitochondrial Rearrangements and Selection in…
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