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Genome-Wide Identification of Histone Deacetylases and Their Roles Related with Light Response in Tartary Buckwheat (Fagopyrum tataricum)

https://doi.org/10.3390/ijms24098090
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1521-1878(199808)20:8<615::aid-bies4>3.0.co;2-hopenalex-snapshot
Roles of histone acetyltransferases and deacetylases in gene regulation
inferredcites →https://doi.org/10.1007/s00299-013-1393-6openalex-snapshot
Histone deacetylases and their functions in plants
inferredcites →https://doi.org/10.1007/s00425-021-03589-1openalex-snapshot
Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa
inferredcites →https://doi.org/10.1007/s11427-019-1587-xopenalex-snapshot
Functions and mechanisms of plant histone deacetylases
inferredcites →https://doi.org/10.1016/j.ijbiomac.2021.09.001openalex-snapshot
Genome-wide analysis of the NF-Y gene family and their roles in relation to fruit development in Tartary buckwheat (Fagopyrum tataricum)
inferredcites →https://doi.org/10.1016/j.jplph.2017.04.007openalex-snapshot
Overexpression of a tartary buckwheat R2R3-MYB transcription factor gene, FtMYB9, enhances tolerance to drought and salt stresses in transgenic Arabidopsis
inferredcites →https://doi.org/10.1016/j.molp.2016.11.007openalex-snapshot
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation
inferredcites →https://doi.org/10.1016/j.molp.2017.08.013openalex-snapshot
The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance
inferredcites →https://doi.org/10.1016/j.pbi.2010.07.001openalex-snapshot
Plant hormone signaling lightens up: integrators of light and hormones
inferredcites →https://doi.org/10.1016/j.plaphy.2009.12.009openalex-snapshot
Analysis of histone acetyltransferase and deacetylase families of Vitis vinifera
inferredcites →https://doi.org/10.1016/j.plaphy.2016.10.022openalex-snapshot
Tartary buckwheat FtMYB10 encodes an R2R3-MYB transcription factor that acts as a novel negative regulator of salt and drought response in transgenic Arabidopsis
inferredcites →https://doi.org/10.1016/j.plaphy.2018.09.012openalex-snapshot
A R2R3-MYB transcription factor gene, FtMYB13, from Tartary buckwheat improves salt/drought tolerance in Arabidopsis
inferredcites →https://doi.org/10.1016/j.plaphy.2019.10.003openalex-snapshot
Tartary buckwheat transcription factor FtbZIP83 improves the drought/salt tolerance of Arabidopsis via an ABA-mediated pathway
inferredcites →https://doi.org/10.1016/j.plaphy.2020.07.047openalex-snapshot
Genome-wide identification of the HDAC family proteins and functional characterization of CsHD2C, a HD2-type histone deacetylase gene in tea plant (Camellia sinensis L. O. Kuntze)
inferredcites →https://doi.org/10.1016/j.sbi.2018.11.003openalex-snapshot
The nucleosome: from structure to function through physics
inferredcites →https://doi.org/10.1016/s0070-2153(10)91002-8openalex-snapshot
Light-Regulated Plant Growth and Development
inferredcites →https://doi.org/10.1021/acs.jafc.0c03037openalex-snapshot
FtMYB6, a Light-Induced SG7 R2R3-MYB Transcription Factor, Promotes Flavonol Biosynthesis in Tartary Buckwheat (Fagopyrum tataricum)
inferredcites →https://doi.org/10.1038/nature05915openalex-snapshot
The complex language of chromatin regulation during transcription
inferredcites →https://doi.org/10.1038/ncomms8243openalex-snapshot
SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme
inferredcites →https://doi.org/10.1038/ng1543openalex-snapshot
A gene expression map of Arabidopsis thaliana development
inferredcites →https://doi.org/10.1038/nrg.2016.59openalex-snapshot
The molecular hallmarks of epigenetic control
inferredcites →https://doi.org/10.1038/nrg2049openalex-snapshot
Light-regulated transcriptional networks in higher plants
inferredcites →https://doi.org/10.1038/sj.onc.1210599openalex-snapshot
HATs and HDACs: from structure, function and regulation to novel strategies for therapy and prevention
inferredcites →https://doi.org/10.1074/jbc.m409000200openalex-snapshot
Arabidopsis HAF2 Gene Encoding TATA-binding Protein (TBP)-associated Factor TAF1, Is Required to Integrate Light Signals to Regulate Gene Expression and Growth
inferredcites →https://doi.org/10.1080/10408398.2021.1952161openalex-snapshot
Bioactive compounds, health benefits, and industrial applications of Tartary buckwheat ( Fagopyrum tataricum )
inferredcites →https://doi.org/10.1093/bioinformatics/btt113openalex-snapshot
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
inferredcites →https://doi.org/10.1093/bioinformatics/btv362openalex-snapshot
IBS: an illustrator for the presentation and visualization of biological sequences
inferredcites →https://doi.org/10.1093/jxb/err290openalex-snapshot
Histone deacetylase HD2 interacts with ERF1 and is involved in longan fruit senescence
inferredcites →https://doi.org/10.1093/jxb/erv562openalex-snapshot
Histone deacetylase HDA9 negatively regulates salt and drought stress responsiveness in Arabidopsis
inferredcites →https://doi.org/10.1093/mp/ssu033openalex-snapshot
Transcriptional Repression by Histone Deacetylases in Plants
inferredcites →https://doi.org/10.1093/nar/30.1.325openalex-snapshot
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
inferredcites →https://doi.org/10.1093/nar/gkaa937openalex-snapshot
SMART: recent updates, new developments and status in 2020
inferredcites →https://doi.org/10.1093/nar/gkf660openalex-snapshot
Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes
inferredcites →https://doi.org/10.1093/nar/gkl198openalex-snapshot
MEME: discovering and analyzing DNA and protein sequence motifs
inferredcites →https://doi.org/10.1093/nar/gkm965openalex-snapshot
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
inferredcites →https://doi.org/10.1093/nar/gkw067openalex-snapshot
Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases inArabidopsis thaliana
inferredcites →https://doi.org/10.1093/nar/gkx283openalex-snapshot
Identification of HDA15-PIF1 as a key repression module directing the transcriptional network of seed germination in the dark
inferredcites →https://doi.org/10.1093/nar/gky448openalex-snapshot
HMMER web server: 2018 update
inferredcites →https://doi.org/10.1093/nar/gkz991openalex-snapshot
CDD/SPARCLE: the conserved domain database in 2020
inferredcites →https://doi.org/10.1101/gad.1467506openalex-snapshot
Mammalian sirtuins—emerging roles in physiology, aging, and calorie restriction
inferredcites →https://doi.org/10.1104/pp.16.00301openalex-snapshot
Banana Transcription Factor MaERF11 Recruits Histone Deacetylase MaHDA1 and Represses the Expression of MaACO1 and Expansins during Fruit Ripening
inferredcites →https://doi.org/10.1104/pp.19.00055openalex-snapshot
HY5 Interacts with the Histone Deacetylase HDA15 to Repress Hypocotyl Cell Elongation in Photomorphogenesis
inferredcites →https://doi.org/10.1105/tpc.018754openalex-snapshot
Arabidopsis Histone Deacetylase HDA6 Is Required for Maintenance of Transcriptional Gene Silencing and Determines Nuclear Organization of rDNA Repeats
inferredcites →https://doi.org/10.1105/tpc.104.028514openalex-snapshot
HISTONE DEACETYLASE19 Is Involved in Jasmonic Acid and Ethylene Signaling of Pathogen Response in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.106.043489openalex-snapshot
Arabidopsis GCN5 , HD1 , and TAF1/HAF2 Interact to Regulate Histone Acetylation Required for Light-Responsive Gene Expression
inferredcites →https://doi.org/10.1105/tpc.107.055566openalex-snapshot
Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense
inferredcites →https://doi.org/10.1105/tpc.109.066845openalex-snapshot
Dynamic Landscapes of Four Histone Modifications during Deetiolation inArabidopsis
inferredcites →https://doi.org/10.1105/tpc.112.096313openalex-snapshot
HISTONE DEACETYLASE19 Interacts with HSL1 and Participates in the Repression of Seed Maturation Genes inArabidopsisSeedlings
inferredcites →https://doi.org/10.1105/tpc.112.101972openalex-snapshot
HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice
inferredcites →https://doi.org/10.1105/tpc.112.107045openalex-snapshot
HDA18 Affects Cell Fate inArabidopsisRoot Epidermis via Histone Acetylation at Four Kinase Genes
inferredcites →https://doi.org/10.1105/tpc.113.109710openalex-snapshot
PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02083.xopenalex-snapshot
Expression and function of HD2‐type histone deacetylases in Arabidopsis development
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03606.xopenalex-snapshot
Genome‐scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
inferredcites →https://doi.org/10.1111/j.1365-313x.2009.03908.xopenalex-snapshot
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice
inferredcites →https://doi.org/10.1111/j.1399-3054.2011.01476.xopenalex-snapshot
Chromatin remodelling in plant light signalling
inferredcites →https://doi.org/10.1111/j.1744-7909.2008.00704.xopenalex-snapshot
Histone Deacetylase Genes in Arabidopsis Development
inferredcites →https://doi.org/10.1111/nph.17114openalex-snapshot
The SNL‐HDA19 histone deacetylase complex antagonizes HY5 activity to repress photomorphogenesis in Arabidopsis
inferredcites →https://doi.org/10.1111/pce.13470openalex-snapshot
The light‐induced transcription factor FtMYB116 promotes accumulation of rutin in Fagopyrum tataricum
inferredcites →https://doi.org/10.1111/tpj.12868openalex-snapshot
Regulation of flowering time by the histone deacetylase HDA 5 in A rabidopsis
inferredcites →https://doi.org/10.1146/annurev.biochem.76.052705.162114openalex-snapshot
Functions of Site-Specific Histone Acetylation and Deacetylation
inferredcites →https://doi.org/10.1186/1939-8433-6-4openalex-snapshot
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
inferredcites →https://doi.org/10.1186/s12870-018-1454-7openalex-snapshot
Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean
inferredcites →https://doi.org/10.1371/journal.pgen.1000638openalex-snapshot
PHYTOCHROME B and HISTONE DEACETYLASE 6 Control Light-Induced Chromatin Compaction in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pgen.1003114openalex-snapshot
Histone Deacetylase HDA6 Is Functionally Associated with AS1 in Repression of KNOX Genes in Arabidopsis
inferredcites →https://doi.org/10.1631/jzus.b2100319openalex-snapshot
Tartary buckwheat database (TBD): an integrative platform for gene analysis of and biological information on Tartary buckwheat
inferredcites →https://doi.org/10.3389/fpls.2014.00760openalex-snapshot
Identification and characterization of histone deacetylases in tomato (Solanum lycopersicum)
inferredcites →https://doi.org/10.3389/fpls.2015.00114openalex-snapshot
Chromatin changes in response to drought, salinity, heat, and cold stresses in plants
inferredcites →https://doi.org/10.3390/agriculture11030244openalex-snapshot
Comprehensive Analysis of the Histone Deacetylase Gene Family in Chinese Cabbage (Brassica rapa): From Evolution and Expression Pattern to Functional Analysis of BraHDA3
inferredcites →https://doi.org/10.3390/ijms21031123openalex-snapshot
Tartary Buckwheat Transcription Factor FtbZIP5, Regulated by FtSnRK2.6, Can Improve Salt/Drought Resistance in Transgenic Arabidopsis

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inferred← citeshttps://doi.org/10.3897/imafungus.17.168980zenodo-depositor-declared
Genome-wide identification and expression profiling of the histone deacetylase gene family in Fusarium oxysporum
inferred← citeshttps://doi.org/10.1007/s40415-024-00995-zopenalex-snapshot
Genome-wide identification, phylogenetic analysis, and functional prediction of histone deacetylase genes in Spinacia oleracea L
inferred← citeshttps://doi.org/10.3390/antiox15080960openalex-snapshot
Roles and Mechanisms of Histone Deacetylases in Plant Abiotic Stress Responses
inferred← citeshttps://doi.org/10.51753/flsrt.1412729openalex-snapshot
In silico analysis of sirtuin-type histone deacetylase genes in sugar beet (Beta vulgaris L.)
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