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The First Five Mitochondrial Genomes for the Family Nidulariaceae Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of Agaricales

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Organelle genetics : evolution of organelle genomes and gene expression
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Fungal mitochondrial genomes and genetic polymorphisms
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Mitochondrial genome of the entomophthoroid fungus Conidiobolus heterosporus provides insights into evolution of basal fungi
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Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
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Medicinal mushrooms: Clinical perspective and challenges
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Mitochondrial inheritance in basidiomycete fungi
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Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion
inferredcites →https://doi.org/10.1016/j.funbio.2021.04.003openalex-snapshot
Molecular systematics and taxonomic overview of the bird's nest fungi (Nidulariaceae)
inferredcites →https://doi.org/10.1016/j.ijbiomac.2019.08.003openalex-snapshot
The complete mitochondrial genomes of five important medicinal Ganoderma species: Features, evolution, and phylogeny
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The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications
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Mitochondrial inheritance in fungi
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Are mitochondria the Achilles’ heel of the Kingdom Fungi?
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Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames
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The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109kb in size and contains a stable integrated plasmid
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Erinacine A and related cyathane diterpenoids: Molecular diversity and mechanisms underlying their neuroprotection and anticancer activities
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Complete mitochondrial genome of Odontobutis haifengensis (Perciformes, Odontobutiae): A unique rearrangement of tRNAs and additional non-coding regions identified in the genus Odontobutis
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Mitogenomics: digging deeper with complete mitochondrial genomes
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Secondary Metabolites of Bird’s Nest Fungi: Chemical Structures and Biological Activities
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Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing
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Molecular Diversity and Potential Anti-neuroinflammatory Activities of Cyathane Diterpenoids from the Basidiomycete Cyathus africanus
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Polyoxygenated cyathane diterpenoids from the mushroom Cyathus africanus, and their neurotrophic and anti-neuroinflammatory activities
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Terpenoids with neurotrophic and anti-neuroinflammatory activities from the cultures of the fungusCyathus stercoreus
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Mitochondria: a historical review.
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DNA Asymmetric Strand Bias Affects the Amino Acid Composition of Mitochondrial Proteins
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High Variability of Mitochondrial Gene Order among Fungi
inferredcites →https://doi.org/10.1093/gbe/evv209openalex-snapshot
Comparative Genomics of Sibling Fungal Pathogenic Taxa Identifies Adaptive Evolution without Divergence in Pathogenicity Genes or Genomic Structure
inferredcites →https://doi.org/10.1093/gbe/evz181openalex-snapshot
Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus
inferredcites →https://doi.org/10.1093/molbev/msm259openalex-snapshot
Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection
inferredcites →https://doi.org/10.1093/nar/28.10.2084openalex-snapshot
Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces
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A comparison of three fission yeast mitochondrial genomes
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Variation in the strength of selected codon usage bias among bacteria
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GenBank
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004068openalex-snapshot
Complete mtDNA Sequences of Two Millipedes Suggest a New Model for Mitochondrial Gene Rearrangements: Duplication and Nonrandom Loss
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026257openalex-snapshot
Nucleotide Bias Causes a Genomewide Bias in the Amino Acid Composition of Proteins
inferredcites →https://doi.org/10.1099/mgen.0.000720openalex-snapshot
Characterization of the mitochondrial genomes of three powdery mildew pathogens reveals remarkable variation in size and nucleotide composition
inferredcites →https://doi.org/10.1128/spectrum.02439-22openalex-snapshot
Chromosome-Level Genome Sequences, Comparative Genomic Analyses, and Secondary-Metabolite Biosynthesis Evaluation of the Medicinal Edible Mushroom Laetiporus sulphureus
inferredcites →https://doi.org/10.1186/1471-2105-10-s6-s15openalex-snapshot
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
inferredcites →https://doi.org/10.1186/1471-2164-12-638openalex-snapshot
Opposite GC skews at the 5' and 3' ends of genes in unicellular fungi
inferredcites →https://doi.org/10.1186/1471-2164-13-698openalex-snapshot
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
inferredcites →https://doi.org/10.1186/gb-2001-2-6-reviews1018openalex-snapshot
The origin and early evolution of mitochondria.
inferredcites →https://doi.org/10.1186/s12864-015-1664-4openalex-snapshot
Population structure of mitochondrial genomes in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1186/s12864-022-08511-xopenalex-snapshot
Genome sequencing of Inonotus obliquus reveals insights into candidate genes involved in secondary metabolite biosynthesis
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Comparative mitogenome analysis of two ectomycorrhizal fungi (Paxillus) reveals gene rearrangement, intron dynamics, and phylogeny of basidiomycetes
inferredcites →https://doi.org/10.1371/journal.pone.0014048openalex-snapshot
The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns
inferredcites →https://doi.org/10.1371/journal.pone.0047834openalex-snapshot
Comparative Mitochondrial Genomics within and among Yeast Species of the Lachancea Genus
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Exploring Mushroom Polysaccharides for the Development of Novel Prebiotics: A Review
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Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
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Diverse Metabolites and Pharmacological Effects from the Basidiomycetes Inonotus hispidus
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Cistanche Species Mitogenomes Suggest Diversity and Complexity in Lamiales-Order Mitogenomes
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Reference-Guided De Novo Genome Assembly of the Flour Beetle Tribolium freemani
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Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite’s Biosynthesis and Medicinal Application
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Factors Affecting Synonymous Codon Usage Bias in Chloroplast Genome of Oncidium Gower Ramsey

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogeny and comparative analysis of mitochondrial genomes of Gomphus spp. Pers. (Basidiomycota, Agaricomycetes), with descriptions of G. matijun J.W. Liu & F.Q. Yu and G. bijiensis sp. nov.
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Distinguishing Sanghuangporus from sanghuang-related fungi: a comparative and phylogenetic analysis based on mitogenomes
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Complete mitochondrial genome of Ganoderma shanxiense (Ganodermataceae, Polyporales)
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The complete mitochondrial genome sequence of the angel-wing mushroom Pleurocybella porrigens
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The first complete mitochondrial genome of Trichaptum biforme (Fr.) Ryvarden 1972 within the family Trichaptaceae, Hymenochaetales
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Characterization of the complete mitochondrial genome and phylogenetic analysis of Amanita franzii (Amanitaceae, Agaricales)
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Genome-wide characterization and metabolite profiling of Cyathus olla: insights into the biosynthesis of medicinal compounds
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Comparative analysis of mitochondrial genomes in lycoperdaceae fungi reveals intron dynamics and phylogenetic relationships
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Complete mitochondrial genomics reveals phylogenetic relationships and mitogenomic features in six ectomycorrhizal Russula species
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Determining Gene Order Patterns in the Suillus and Boletales through Comparative Analysis of Their Mitogenomes
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Hybrid Genome Assembly and Annotation of the Basidiomycete Fungus Candolleomyces candolleanus Strain CMU-8613 Using a Cost-Effective Iterative Pipeline
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Comparative Mitogenomics Reveals Intron Dynamics and Mitochondrial Gene Expression Shifts in Domesticated and Wild Pleurotus ostreatus
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Phylogenetic Relationships of Five Phallales Species Based on Mitochondrial Genome Analysis
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Additional file 1 of Genome-wide characterization and metabolite profiling of Cyathus olla: insights into the biosynthesis of medicinal compounds
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