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Chloroplast Genomes Evolution and Phylogenetic Relationships of Caragana species

https://doi.org/10.3390/ijms25126786
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.8499openalex-snapshot
Loss of the IR region in conifer plastomes: Changes in the selection pressure and substitution rate of protein‐coding genes
inferredcites →https://doi.org/10.1007/s00239-008-9180-7openalex-snapshot
Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
inferredcites →https://doi.org/10.1007/s00425-016-2551-1openalex-snapshot
Chloroplasts: state of research and practical applications of plastome sequencing
inferredcites →https://doi.org/10.1007/s00425-021-03812-zopenalex-snapshot
Comprehensive analysis of chloroplast genome of Albizia julibrissin Durazz. (Leguminosae sp.)
inferredcites →https://doi.org/10.1007/s00606-015-1196-zopenalex-snapshot
Inferring ancestral distribution area and survival vegetation of Caragana (Fabaceae) in Tertiary
inferredcites →https://doi.org/10.1016/j.molp.2020.06.009openalex-snapshot
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
inferredcites →https://doi.org/10.1016/j.ympev.2008.06.013openalex-snapshot
Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)
inferredcites →https://doi.org/10.1016/j.ympev.2008.12.001openalex-snapshot
Phylogeny of Caragana (Fabaceae) based on DNA sequence data from rbcL, trnS–trnG, and ITS
inferredcites →https://doi.org/10.1016/j.ympev.2021.107235openalex-snapshot
Phylogenomic framework of the IRLC legumes (Leguminosae subfamily Papilionoideae) and intercontinental biogeography of tribe Wisterieae
inferredcites →https://doi.org/10.1016/j.ympev.2021.107330openalex-snapshot
Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/srep36528openalex-snapshot
Himalayan uplift shaped biomes in Miocene temperate Asia: evidence from leguminous Caragana
inferredcites →https://doi.org/10.1093/bioinformatics/btl117openalex-snapshot
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btx198openalex-snapshot
MISA-web: a web server for microsatellite prediction
inferredcites →https://doi.org/10.1093/gbe/evz076openalex-snapshot
Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence
inferredcites →https://doi.org/10.1093/jpe/rtac064openalex-snapshot
Carbon–water coupling and its relationship with environmental and biological factors in a planted Caragana liouana shrub community in desert steppe, northwest China
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msq261openalex-snapshot
Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst179openalex-snapshot
PAMLX: A Graphical User Interface for PAML
inferredcites →https://doi.org/10.1093/molbev/mst257openalex-snapshot
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
inferredcites →https://doi.org/10.1093/nar/gkh458openalex-snapshot
VISTA: computational tools for comparative genomics
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1105/tpc.13.3.645openalex-snapshot
Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus
inferredcites →https://doi.org/10.1111/1755-0998.13096openalex-snapshot
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
inferredcites →https://doi.org/10.1111/jse.12900openalex-snapshot
Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes
inferredcites →https://doi.org/10.1111/jse.13020openalex-snapshot
Divergence in Elymus sibiricus is related to geography and climate oscillation: A new look from pan‐chloroplast genome data
inferredcites →https://doi.org/10.1111/tpj.15351openalex-snapshot
The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes
inferredcites →https://doi.org/10.1186/s12862-014-0228-6openalex-snapshot
Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)
inferredcites →https://doi.org/10.1186/s12864-022-08573-xopenalex-snapshot
A large-scale population based organelle pan-genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion in Brassica napus L.
inferredcites →https://doi.org/10.1186/s12870-022-03465-4openalex-snapshot
The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species
inferredcites →https://doi.org/10.1186/s12870-023-04034-zopenalex-snapshot
Insights into the phylogeny and chloroplast genome evolution of Eriocaulon (Eriocaulaceae)
inferredcites →https://doi.org/10.1186/s12870-024-04979-9openalex-snapshot
Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis
inferredcites →https://doi.org/10.1186/s12915-022-01297-0openalex-snapshot
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family
inferredcites →https://doi.org/10.1186/s13007-019-0435-7openalex-snapshot
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.1371/journal.pone.0077965openalex-snapshot
Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
inferredcites →https://doi.org/10.1371/journal.pone.0123228openalex-snapshot
Spatiotemporal Evolution of Calophaca (Fabaceae) Reveals Multiple Dispersals in Central Asian Mountains
inferredcites →https://doi.org/10.1371/journal.pone.0272990openalex-snapshot
The chloroplasts genomic analyses of four specific Caragana species
inferredcites →https://doi.org/10.17520/biods.2022385openalex-snapshot
A review of recent studies of plant systematics and evolution in China
inferredcites →https://doi.org/10.2307/25065563openalex-snapshot
Legumes of the World
inferredcites →https://doi.org/10.3389/fpls.2022.891783openalex-snapshot
Complete Chloroplast Genome of the Inverted Repeat-Lacking Species Vicia bungei and Development of Polymorphic Simple Sequence Repeat Markers
inferredcites →https://doi.org/10.3390/ijms19051419openalex-snapshot
Sequencing, Characterization, and Comparative Analyses of the Plastome of Caragana rosea var. rosea
inferredcites →https://doi.org/10.3390/ijms24043606openalex-snapshot
Maternal Donor and Genetic Variation of Lagerstroemia indica Cultivars
inferredcites →https://doi.org/10.3390/ijms24076072openalex-snapshot
Comparative Analysis of Chloroplast Genome of Desmodium stryacifolium with Closely Related Legume Genome from the Phaseoloid Clade
inferredcites →https://doi.org/10.3390/ijms242216130openalex-snapshot
Complete Chloroplast Genome of Hypericum perforatum and Dynamic Evolution in Hypericum (Hypericaceae)
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.07071openalex-snapshot
Molecular phylogeny of Caragana (Fabaceae) in China
inferredcites →https://doi.org/10.3724/sp.j.1259.2013.00072openalex-snapshot
A Modified CTAB Protocol for Plant DNA Extraction
inferredcites →https://doi.org/10.3897/phytokeys.70.9641openalex-snapshot
A molecular phylogeny of Caraganeae (Leguminosae, Papilionoideae) reveals insights into new generic and infrageneric delimitations

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.728.1.8zenodo-depositor-declared
New combinations and replacement names in Caragana (Fabaceae)
inferred← citeshttps://doi.org/10.1002/ece3.71141openalex-snapshot
Chloroplast Genome Evolution of Hamamelidaceae at Subfamily Level
inferred← citeshttps://doi.org/10.1007/s00606-025-01942-5openalex-snapshot
Comparative analysis of the complete chloroplast genomes of critically endangered legumes (Dalbergia, Papilionoideae): insights into genome structure, phylogeny, and conservation implications
inferred← citeshttps://doi.org/10.1007/s10142-026-01839-7openalex-snapshot
The complete chloroplast genome sequence of Typhonium flagelliforme, an anti-cancer medicinal plant: genome structure, comparative and phylogenetic relationship analysis within Araceae
inferred← citeshttps://doi.org/10.1016/j.phymed.2024.156338openalex-snapshot
Comparative chloroplast genome analyses provide new insights into molecular markers for distinguishing Arnebiae Radix and its substitutes (tribe Lithospermeae, Boraginaceae)
inferred← citeshttps://doi.org/10.1038/s41598-025-96665-5openalex-snapshot
Phylogeny and evolutionary dynamics of the Rubia genus based on the chloroplast genome of Rubia tibetica
inferred← citeshttps://doi.org/10.1111/jse.70015openalex-snapshot
Plastome evolution in the Caesalpinia group (Caesalpinioideae, Fabaceae): Comparative genomics reveals genome dynamics, phylogenetic insights and adaptive evolution
inferred← citeshttps://doi.org/10.1134/s1995425524700884openalex-snapshot
Biologically Active Compounds, Photosynthetic Pigments, and Antiradical Activity in Leaf Extracts of Siberian Caragana Species (Fabaceae)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10743852/v1openalex-snapshot
The Complete Plastome Sequence of Caragana and Comparative Analysis with Their Congeneric Species
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7254318/v1openalex-snapshot
Phylogenetic Relationships and Ecological Adaptability Diversity of Twelve Caragana Species in China
inferred← citeshttps://doi.org/10.3389/fpls.2025.1645582openalex-snapshot
Comparative chloroplast genome analyses of Oxytropis DC. species: new insights into genome evolution and phylogenomic implications
inferred← citeshttps://doi.org/10.3390/plants14203196openalex-snapshot
The Current State of Knowledge on Ribes spp. (Currant) Plants
inferred← citeshttps://doi.org/10.3390/plants15132001openalex-snapshot
Dynamic Changes in the Potential Suitable Habitat of Caragana korshinskii Under Climate Change Based on a Biomod2 Ensemble Model
inferred← citeshttps://doi.org/10.3390/plants15172733openalex-snapshot
Development of Genome-Derived InDel Markers and Genetic Diversity Analysis of Caragana acanthophylla in Xinjiang, China
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