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Current Insight into Culture-Dependent and Culture-Independent Methods in Discovering Ascomycetous Taxa

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Retracted: Tissue culture of some lichens and screening of their antioxidant, antityrosinase and antibacterial properties
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Phylogenetic Species Recognition and Species Concepts in Fungi
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Fungal Endophytes of Tree Leaves
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YOUMARES 9 - The Oceans: Our Research, Our Future
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Status of Marine Biodiversity in the Anthropocene
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Biology of Microfungi
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Microfungi in Biofuel and Bioenergy Research
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Future Perspectives and Challenges of Fungal Systematics in the Age of Big Data
inferredcites →https://doi.org/10.1007/978-3-319-54304-8openalex-snapshot
Fungi in Coastal and Oceanic Marine Ecosystems
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Methods to Study Marine Fungi
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Ectomycorrhizal Fungal Lineages: Detection of Four New Groups and Notes on Consistent Recognition of Ectomycorrhizal Taxa in High-Throughput Sequencing Studies
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Cultured and Uncultured Fungal Diversity in Deep-Sea Environments
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Isolation and Culture of Lichen Photobionts and Mycobionts
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Culture of Thallus Fragments and Redifferentiation of Lichens
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In Vitro Culture of Lichen Partners: Need and Implications
inferredcites →https://doi.org/10.1007/bf01574703openalex-snapshot
Microfungi from decaying leaves of two rain forest trees in Puerto Rico
inferredcites →https://doi.org/10.1007/bf03053147openalex-snapshot
Problems and prospects in the systematics of the Ascomycotina
inferredcites →https://doi.org/10.1007/s00248-006-9117-xopenalex-snapshot
A Phylogenetic Evaluation of Whether Endophytes Become Saprotrophs at Host Senescence
inferredcites →https://doi.org/10.1007/s00248-010-9765-8openalex-snapshot
Fungal Community Analysis in the Deep-Sea Sediments of the Central Indian Basin by Culture-Independent Approach
inferredcites →https://doi.org/10.1007/s00248-014-0448-8openalex-snapshot
High Fungal Diversity and Abundance Recovered in the Deep-Sea Sediments of the Pacific Ocean
inferredcites →https://doi.org/10.1007/s10531-012-0335-xopenalex-snapshot
Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate?
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The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors
inferredcites →https://doi.org/10.1007/s11274-016-2030-7openalex-snapshot
Fungal communities from the calcareous deep-sea sediments in the Southwest India Ridge revealed by Illumina sequencing technology
inferredcites →https://doi.org/10.1007/s11557-006-0021-zopenalex-snapshot
Macrocarpones, novel metabolites from stromata of Hypoxylon macrocarpum, and new evidence on the chemotaxonomy of Hypoxylon species
inferredcites →https://doi.org/10.1007/s12010-017-2568-3openalex-snapshot
Metagenome Analysis: a Powerful Tool for Enzyme Bioprospecting
inferredcites →https://doi.org/10.1007/s13225-010-0063-zopenalex-snapshot
Culture collections, the new herbaria for fungal pathogens
inferredcites →https://doi.org/10.1007/s13225-010-0087-4openalex-snapshot
Bioactivity and genetic diversity of endophytic fungi in Rhododendron tomentosum Harmaja
inferredcites →https://doi.org/10.1007/s13225-011-0126-9openalex-snapshot
The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens
inferredcites →https://doi.org/10.1007/s13225-014-0309-2openalex-snapshot
Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names
inferredcites →https://doi.org/10.1007/s13225-014-0315-4openalex-snapshot
Epitypification and neotypification: guidelines with appropriate and inappropriate examples
inferredcites →https://doi.org/10.1007/s13225-018-0399-3openalex-snapshot
Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera)
inferredcites →https://doi.org/10.1007/s13225-018-0404-xopenalex-snapshot
Can we use environmental DNA as holotypes?
inferredcites →https://doi.org/10.1007/s13225-020-00456-4openalex-snapshot
Identifying the ‘unidentified’ fungi: a global-scale long-read third-generation sequencing approach
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The numbers of fungi: is the descriptive curve flattening?
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Decline in virulence of Entomophaga maimaiga (Zygomycetes: Entomophthorales) with repeated in vitro subculture
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Clostridial strain degeneration
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METHODS OF ISOLATING AND CULTURING LICHEN SYMBIONTS AND THALLI
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
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Fungi
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Deciphering taxonomic and functional diversity of fungi as potential bioindicators within confluence stretch of Ganges and Yamuna Rivers, impacted by anthropogenic activities
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The mycobiome: Role in health and disease, and as a potential probiotic target in gastrointestinal disease
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Fungal diversity in deep-sea sediments associated with asphalt seeps at the Sao Paulo Plateau
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Aerobiological study of bacterial and fungal community composition in the atmosphere of Mexico City throughout an annual cycle
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Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
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Viability of ectomycorrhizal fungi following cryopreservation
inferredcites →https://doi.org/10.1016/j.funbio.2014.08.005openalex-snapshot
Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species
inferredcites →https://doi.org/10.1016/j.funbio.2016.07.004openalex-snapshot
Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS)
inferredcites →https://doi.org/10.1016/j.funeco.2015.06.004openalex-snapshot
Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi
inferredcites →https://doi.org/10.1016/j.jmoldx.2020.06.017openalex-snapshot
Amplicon-Based Next-Generation Sequencing for Detection of Fungi in Formalin-Fixed, Paraffin-Embedded Tissues
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Fungal interactions with the human host: exploring the spectrum of symbiosis
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Sequences, the environment and fungi
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Novel fluorescent isoquinoline pigments, panaefluorolines A–C from the cultured mycobiont of a lichen, Amygdalaria panaeola
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Ten years of next-generation sequencing technology
inferredcites →https://doi.org/10.1016/j.tree.2011.11.001openalex-snapshot
Evolutionary informatics: unifying knowledge about the diversity of life
inferredcites →https://doi.org/10.1016/s0007-1536(62)80055-2openalex-snapshot
Colletotrichum dematium (Pers. ex Fr.) Grove and C. trichellum (Fr. ex Fr.) Duke
inferredcites →https://doi.org/10.1016/s0007-1536(74)80032-xopenalex-snapshot
Dilophia sacc. and Dilophospora desm
inferredcites →https://doi.org/10.1016/s0007-1536(76)80136-2openalex-snapshot
The Phoma species studied in culture by Dr R. W. G. Dennis
inferredcites →https://doi.org/10.1016/s0031-9422(00)89659-4openalex-snapshot
Pigments from the cultured lichen mycobionts of Graphis scripta and G. desquamescens
inferredcites →https://doi.org/10.1016/s0031-9422(02)00128-0openalex-snapshot
Isofuranonaphthoquinone derivatives from cultures of the lichen Arthonia cinnabarina (DC.) Wallr.
inferredcites →https://doi.org/10.1016/s0031-9422(96)00495-5openalex-snapshot
Naphthazarin derivatives from cultures of the lichen Cladonia cristatella
inferredcites →https://doi.org/10.1016/s0953-7562(09)80810-1openalex-snapshot
The fungal dimension of biodiversity: magnitude, significance, and conservation
inferredcites →https://doi.org/10.1016/s0953-7562(09)81386-5openalex-snapshot
Preliminary study of endophytic fungi in a tropical palm
inferredcites →https://doi.org/10.1016/s0953-7562(89)80007-3openalex-snapshot
Pycnidial formation and pathogenicity in Tubakia dryina
inferredcites →https://doi.org/10.1016/s1074-5521(98)90108-9openalex-snapshot
Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products
inferredcites →https://doi.org/10.1017/s0953756201004725openalex-snapshot
The magnitude of fungal diversity: the 1.5 million species estimate revisited
inferredcites →https://doi.org/10.1017/s0953756204009347openalex-snapshot
Chemotaxonomy of Entonaema, Rhopalostroma and other Xylariaceae
inferredcites →https://doi.org/10.1017/s0953756205003989openalex-snapshot
Botryosphaeria species from Eucalyptus in Australia are pleoanamorphic, producing Dichomera synanamorphs in culture
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Nucleotide sequence of bacteriophage φX174 DNA
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Nucleotide sequence of bacteriophage G4 DNA
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Genome sequencing in microfabricated high-density picolitre reactors
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
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Discovery of novel intermediate forms redefines the fungal tree of life
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Next-generation DNA sequencing
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Next-generation sequencing transforms today's biology
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In situ cultivation of previously uncultivable microorganisms using the ichip
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Fungal systematics: is a new age of enlightenment at hand?
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Mycobiome diversity: high-throughput sequencing and identification of fungi
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Structure and function of the global topsoil microbiome
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Diversity of endophytic mycobiota of tropical tree Tectona grandis Linn.f.: Spatiotemporal and tissue type effects
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Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
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Loss of pathogenicity in the blue‐stain fungus Ceratocystis polonica
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Sesquiterpene derivatives from cultured lichen mycobionts of Diorygma sp.
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Additions to Hyphopolynema (Hyphomycetes)
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Human gut microbiota in obesity and after gastric bypass
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Herbaria are a major frontier for species discovery
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DNA sequencing with chain-terminating inhibitors
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Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (A Review)
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Phoma identification manual. Differentiation of specific and infra-specific taxa in culture
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Ainsworth and Bisbys Dictionary of the Fungi
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A New Species and a New Variety ofEndocalyx(Deuteromycotina) from Japan
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Amplification and Sequencing of DNA from Fungal Herbarium Specimens
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Abundance and Diversity of Microfungi in Leaf Litter of a Lowland Rain Forest in Costa Rica
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New Zealand Fungi 31. Capnobotrys , an anamorph of Metacapnodiaceae
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Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi
inferredcites →https://doi.org/10.1080/21501203.2020.1799878openalex-snapshot
Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions
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Experiments on the Growth of Fungi on Culture Media
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Forgotten fungi—the gut mycobiome in human health and disease
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The Sequence Read Archive
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The sequence read archive: explosive growth of sequencing data
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Where Are All the Undescribed Fungi?
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DNA barcoding and taxonomy: dark taxa and dark texts
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A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens
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Fungal palaeodiversity revealed using high‐throughput metabarcoding of ancient DNA from arctic permafrost
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PipeCraft: Flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data
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The genome and microbiome of a dikaryotic fungus ( Inocybe terrigena , Inocybaceae) revealed by metagenomics
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Next‐generation sequencing technologies for environmental DNA research
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How to know unknown fungi: the role of a herbarium
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Large‐scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
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Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03373.xopenalex-snapshot
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
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Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations
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Progress towards DNA barcoding of fungi
inferredcites →https://doi.org/10.1111/mec.12481openalex-snapshot
Towards a unified paradigm for sequence‐based identification of fungi
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Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field‐based tree experiment
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Soil fungal diversity in natural grasslands of the Tibetan Plateau: associations with plant diversity and productivity
inferredcites →https://doi.org/10.1111/ppa.13316openalex-snapshot
Molecular data from up to 130‐year‐old herbarium specimens do not support the presence of cherry powdery mildew in Australia
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Seasonal Dynamics of Previously Unknown Fungal Lineages in Tundra Soils
inferredcites →https://doi.org/10.1126/science.1117389openalex-snapshot
Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
inferredcites →https://doi.org/10.1126/science.1206958openalex-snapshot
Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi
inferredcites →https://doi.org/10.1126/science.1256688openalex-snapshot
Global diversity and geography of soil fungi
inferredcites →https://doi.org/10.1126/science.aaf4507openalex-snapshot
Decoupling function and taxonomy in the global ocean microbiome
inferredcites →https://doi.org/10.1126/science.aaf7115openalex-snapshot
Digital identifiers for fungal species
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Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology
inferredcites →https://doi.org/10.1128/aem.01754-09openalex-snapshot
Use of Ichip for High-Throughput In Situ Cultivation of “Uncultivable” Microbial Species
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Analysis of Growth Characteristics of Filamentous Fungi in Different Nutrient Media
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Fungal Diversity Revisited: 2.2 to 3.8 Million Species
inferredcites →https://doi.org/10.1134/s0026261718060061openalex-snapshot
Method for Isolation and Enumeration of Fungi Developing in Marine Sediments
inferredcites →https://doi.org/10.1139/b68-115openalex-snapshot
The appressoria of Colletotrichum graminicola and C. falcatum
inferredcites →https://doi.org/10.1139/b82-102openalex-snapshot
Endophytic fungi in evergreen shrubs in western Oregon: A preliminary study
inferredcites →https://doi.org/10.1139/cjr48c-026openalex-snapshot
STUDIES IN FOREST PATHOLOGY: VI. IDENTIFICATION OF CULTURES OF WOOD-ROTTING FUNGI
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The Human Ocular Surface Fungal Microbiome
inferredcites →https://doi.org/10.1186/2049-2618-1-6openalex-snapshot
CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
inferredcites →https://doi.org/10.1186/s12864-020-07086-9openalex-snapshot
In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis
inferredcites →https://doi.org/10.1186/s12866-019-1634-0openalex-snapshot
Diversity and bioactivities of fungal endophytes from Distylium chinense, a rare waterlogging tolerant plant endemic to the Three Gorges Reservoir
inferredcites →https://doi.org/10.1186/s40168-017-0259-5openalex-snapshot
Novel soil-inhabiting clades fill gaps in the fungal tree of life
inferredcites →https://doi.org/10.1186/s43008-020-00033-zopenalex-snapshot
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
inferredcites →https://doi.org/10.1186/s43008-021-00063-1openalex-snapshot
How to publish a new fungal species, or name, version 3.0
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Four Phenolics from the Cultured Lichen Mycobiont of Graphis scripta var. pulverulenta.
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(308–310) Proposals to permit DNA sequence data to serve as types of names of fungi
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International Code of Nomenclature for algae, fungi, and plants
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Tissue cultures of Usnea rubescens and Ramalina yasudae and production of usnic acid in their cultures.
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Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
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A Primer on Metagenomics
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Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
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Identification of fungi in shotgun metagenomics datasets
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A comparative analysis of drinking water employing metagenomics
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Rediscovering an old foe: Optimised molecular methods for DNA extraction and sequencing applications for fungarium specimens of powdery mildew (Erysiphales)
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Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals
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