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Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi1413s53openalex-snapshot
MetaboLights: An Open‐Access Database Repository for Metabolomics Data
inferredcites →https://doi.org/10.1002/1097-0290(2000)71:4<286::aid-bit1018>3.0.co;2-ropenalex-snapshot
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
inferredcites →https://doi.org/10.1002/1097-0290(2000)71:4<286::aid-bit1018>3.3.co;2-iopenalex-snapshot
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
inferredcites →https://doi.org/10.1002/cem.1388openalex-snapshot
OnPLS—a novel multiblock method for the modelling of predictive and orthogonal variation
inferredcites →https://doi.org/10.1002/cem.724openalex-snapshot
O2‐PLS for qualitative and quantitative analysis in multivariate calibration
inferredcites →https://doi.org/10.1002/cem.775openalex-snapshot
O2‐PLS, a two‐block (X–Y) latent variable regression (LVR) method with an integral OSC filter
inferredcites →https://doi.org/10.1002/gepi.21808openalex-snapshot
Poly-Omic Prediction of Complex Traits: OmicKriging
inferredcites →https://doi.org/10.1002/jimd.12008openalex-snapshot
Translational Metabolism: A multidisciplinary approach towards precision diagnosis of inborn errors of metabolism in the omics era
inferredcites →https://doi.org/10.1002/prot.23159openalex-snapshot
Protein stability and in vivo concentration of missense mutations in phenylalanine hydroxylase
inferredcites →https://doi.org/10.1007/978-1-4939-6371-3_1openalex-snapshot
Using FlyBase, a Database of Drosophila Genes and Genomes
inferredcites →https://doi.org/10.1007/978-1-4939-8935-5_29openalex-snapshot
Fundamentals of RNA Analysis on Biobanked Specimens
inferredcites →https://doi.org/10.1007/978-3-319-46326-1_10openalex-snapshot
Beyond Metabolomics: A Review of Multi-Omics-Based Approaches
inferredcites →https://doi.org/10.1007/978-3-319-47656-8_14openalex-snapshot
Erratum to: Chapters 1 and 11 of Metabolomics: From Fundamentals to Clinical Applications
inferredcites →https://doi.org/10.1007/978-3-319-47656-8_2openalex-snapshot
Collection and Preparation of Clinical Samples for Metabolomics
inferredcites →https://doi.org/10.1007/s11306-006-0037-zopenalex-snapshot
Statistical strategies for avoiding false discoveries in metabolomics and related experiments
inferredcites →https://doi.org/10.1007/s11306-013-0612-zopenalex-snapshot
Regularized projection pursuit for data with a small sample-to-variable ratio
inferredcites →https://doi.org/10.1007/s11306-014-0734-yopenalex-snapshot
MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data
inferredcites →https://doi.org/10.1007/s11306-015-0823-6openalex-snapshot
Computational and statistical analysis of metabolomics data
inferredcites →https://doi.org/10.1007/s11306-018-1449-2openalex-snapshot
Review of recent developments in GC–MS approaches to metabolomics-based research
inferredcites →https://doi.org/10.1016/0169-2607(92)90102-dopenalex-snapshot
A Macintosh software package for simulation of human red blood cell metabolism
inferredcites →https://doi.org/10.1016/bs.adgen.2015.11.004openalex-snapshot
Integrative Analysis of Multi-omics Data for Discovery and Functional Studies of Complex Human Diseases
inferredcites →https://doi.org/10.1016/j.biosystems.2011.04.003openalex-snapshot
Visualizing multi-omics data in metabolic networks with the software Omix—A case study
inferredcites →https://doi.org/10.1016/j.cbpa.2006.06.025openalex-snapshot
The application of systems biology to drug discovery
inferredcites →https://doi.org/10.1016/j.cell.2005.04.020openalex-snapshot
Systems Biology: Its Practice and Challenges
inferredcites →https://doi.org/10.1016/j.cell.2012.02.009openalex-snapshot
Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes
inferredcites →https://doi.org/10.1016/j.cell.2015.11.001openalex-snapshot
Personalized Nutrition by Prediction of Glycemic Responses
inferredcites →https://doi.org/10.1016/j.cell.2016.08.007openalex-snapshot
Toward Accurate and Quantitative Comparative Metagenomics
inferredcites →https://doi.org/10.1016/j.cell.2018.08.065openalex-snapshot
Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer
inferredcites →https://doi.org/10.1016/j.cels.2016.04.004openalex-snapshot
Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow
inferredcites →https://doi.org/10.1016/j.coisb.2017.08.007openalex-snapshot
Metabolomics-driven understanding of genotype-phenotype relations in model organisms
inferredcites →https://doi.org/10.1016/j.coisb.2017.08.009openalex-snapshot
Designing and interpreting ‘multi-omic’ experiments that may change our understanding of biology
inferredcites →https://doi.org/10.1016/j.copbio.2017.07.008openalex-snapshot
Systems and synthetic biology for the biotechnological application of cyanobacteria
inferredcites →https://doi.org/10.1016/j.copbio.2017.10.009openalex-snapshot
Production of chemicals using dynamic control of metabolic fluxes
inferredcites →https://doi.org/10.1016/j.copbio.2017.11.013openalex-snapshot
Towards utilization of the human genome and microbiome for personalized nutrition
inferredcites →https://doi.org/10.1016/j.copbio.2018.01.009openalex-snapshot
Quantitative -omic data empowers bottom-up systems biology
inferredcites →https://doi.org/10.1016/j.drudis.2016.11.020openalex-snapshot
UPLC–MS for metabolomics: a giant step forward in support of pharmaceutical research
inferredcites →https://doi.org/10.1016/j.jbiotec.2004.04.038openalex-snapshot
Toward large-scale modeling of the microbial cell for computer simulation
inferredcites →https://doi.org/10.1016/j.jbiotec.2009.08.010openalex-snapshot
In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods
inferredcites →https://doi.org/10.1016/j.micres.2015.01.003openalex-snapshot
Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology
inferredcites →https://doi.org/10.1016/j.nhtm.2017.06.001openalex-snapshot
Metabolomics for the masses: The future of metabolomics in a personalized world
inferredcites →https://doi.org/10.1016/j.physrep.2014.07.001openalex-snapshot
The structure and dynamics of multilayer networks
inferredcites →https://doi.org/10.1016/j.pnmrs.2017.11.003openalex-snapshot
Environmental metabolomics with data science for investigating ecosystem homeostasis
inferredcites →https://doi.org/10.1016/j.scitotenv.2017.07.184openalex-snapshot
A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.03.106openalex-snapshot
Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach
inferredcites →https://doi.org/10.1016/j.watres.2015.10.029openalex-snapshot
An ‘omics’ approach towards the characterisation of laboratory scale anaerobic digesters treating municipal sewage sludge
inferredcites →https://doi.org/10.1016/j.ymeth.2009.03.016openalex-snapshot
RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing
inferredcites →https://doi.org/10.1021/ac301269ropenalex-snapshot
Building Multivariate Systems Biology Models
inferredcites →https://doi.org/10.1021/acs.analchem.8b03205openalex-snapshot
OnPLS-Based Multi-Block Data Integration: A Multivariate Approach to Interrogating Biological Interactions in Asthma
inferredcites →https://doi.org/10.1021/acssynbio.8b00140openalex-snapshot
Minimizing Clonal Variation during Mammalian Cell Line Engineering for Improved Systems Biology Data Generation
inferredcites →https://doi.org/10.1021/cb500609popenalex-snapshot
Metabolic dynamics analysis by massive data integration: application to tsunami-affected field soils in Japan
inferredcites →https://doi.org/10.1021/pr060124wopenalex-snapshot
Statistically Integrated Metabonomic−Proteomic Studies on a Human Prostate Cancer Xenograft Model in Mice
inferredcites →https://doi.org/10.1021/pr9006365openalex-snapshot
Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry
inferredcites →https://doi.org/10.1038/35036627openalex-snapshot
The large-scale organization of metabolic networks
inferredcites →https://doi.org/10.1038/msb.2010.18openalex-snapshot
Metabolomic and transcriptomic stress response of Escherichia coli
inferredcites →https://doi.org/10.1038/nature04768openalex-snapshot
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4
inferredcites →https://doi.org/10.1038/nature14238openalex-snapshot
Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
inferredcites →https://doi.org/10.1038/nature18003openalex-snapshot
Proteogenomics connects somatic mutations to signalling in breast cancer
inferredcites →https://doi.org/10.1038/nbt.2488openalex-snapshot
A community-driven global reconstruction of human metabolism
inferredcites →https://doi.org/10.1038/nbt.3790openalex-snapshot
Discovering and linking public omics data sets using the Omics Discovery Index
inferredcites →https://doi.org/10.1038/nbt.3870openalex-snapshot
A wellness study of 108 individuals using personal, dense, dynamic data clouds
inferredcites →https://doi.org/10.1038/nbt.4072openalex-snapshot
Recon3D enables a three-dimensional view of gene variation in human metabolism
inferredcites →https://doi.org/10.1038/nbt1094-994openalex-snapshot
Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use
inferredcites →https://doi.org/10.1038/nbt1492openalex-snapshot
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
inferredcites →https://doi.org/10.1038/ncomms4114openalex-snapshot
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
inferredcites →https://doi.org/10.1038/nplants.2015.99openalex-snapshot
Encouraging metadata curation in the Diversity Seek initiative
inferredcites →https://doi.org/10.1038/npp.2017.221openalex-snapshot
Integrating ‘Omics’ Approaches to Prioritize New Pathogenetic Mechanisms for Mental Disorders
inferredcites →https://doi.org/10.1038/nrg1272openalex-snapshot
Network biology: understanding the cell's functional organization
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
inferredcites →https://doi.org/10.1038/nrmicro2737openalex-snapshot
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
inferredcites →https://doi.org/10.1038/s41540-018-0063-2openalex-snapshot
From metagenomic data to personalized in silico microbiotas: predicting dietary supplements for Crohn’s disease
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1038/srep32584openalex-snapshot
Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls
inferredcites →https://doi.org/10.1038/srep40863openalex-snapshot
Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression
inferredcites →https://doi.org/10.1049/iet-syb:20070020openalex-snapshot
Modelling biological modularity with CellML
inferredcites →https://doi.org/10.1080/14789450.2018.1476143openalex-snapshot
Integrative omics - from data to biology
inferredcites →https://doi.org/10.1089/omi.2014.0062openalex-snapshot
Novel Multivariate Methods for Integration of Genomics and Proteomics Data: Applications in a Kidney Transplant Rejection Study
inferredcites →https://doi.org/10.1093/bfgp/elm027openalex-snapshot
Resources, standards and tools for systems biology
inferredcites →https://doi.org/10.1093/bioinformatics/15.1.72openalex-snapshot
E-CELL: software environment for whole-cell simulation.
inferredcites →https://doi.org/10.1093/bioinformatics/18.3.405openalex-snapshot
Analysis of matched mRNA measurements from two different microarray technologies
inferredcites →https://doi.org/10.1093/bioinformatics/btg015openalex-snapshot
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
inferredcites →https://doi.org/10.1093/bioinformatics/btg042openalex-snapshot
Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations
inferredcites →https://doi.org/10.1093/bioinformatics/btq183openalex-snapshot
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
inferredcites →https://doi.org/10.1093/bioinformatics/btq583openalex-snapshot
OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
inferredcites →https://doi.org/10.1093/bioinformatics/btq594openalex-snapshot
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
inferredcites →https://doi.org/10.1093/bioinformatics/btr499openalex-snapshot
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
inferredcites →https://doi.org/10.1093/bioinformatics/btr661openalex-snapshot
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btt703openalex-snapshot
Causal analysis approaches in Ingenuity Pathway Analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bty679openalex-snapshot
LipidFinder on LIPID MAPS: peak filtering, MS searching and statistical analysis for lipidomics
inferredcites →https://doi.org/10.1093/database/bax002openalex-snapshot
Outreach and online training services at the Saccharomyces Genome Database
inferredcites →https://doi.org/10.1093/jnci/djq306openalex-snapshot
Cancer Biomarkers: Can We Turn Recent Failures into Success?
inferredcites →https://doi.org/10.1093/jxb/erv271openalex-snapshot
Towards recommendations for metadata and data handling in plant phenotyping
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkm961openalex-snapshot
The Mouse Genome Database (MGD): mouse biology and model systems
inferredcites →https://doi.org/10.1093/nar/gkp552openalex-snapshot
Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances
inferredcites →https://doi.org/10.1093/nar/gkp875openalex-snapshot
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
inferredcites →https://doi.org/10.1093/nar/gkt338openalex-snapshot
INMEX—a web-based tool for integrative meta-analysis of expression data
inferredcites →https://doi.org/10.1093/nar/gkv1031openalex-snapshot
ChEBI in 2016: Improved services and an expanding collection of metabolites
inferredcites →https://doi.org/10.1093/nar/gkv1060openalex-snapshot
ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli
inferredcites →https://doi.org/10.1093/nar/gkv1145openalex-snapshot
2016 update of the PRIDE database and its related tools
inferredcites →https://doi.org/10.1093/nar/gkv1164openalex-snapshot
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
inferredcites →https://doi.org/10.1093/nar/gkv1217openalex-snapshot
WormBase 2016: expanding to enable helminth genomic research
inferredcites →https://doi.org/10.1093/nar/gkv1351openalex-snapshot
The Reactome pathway Knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkw1058openalex-snapshot
YMDB 2.0: a significantly expanded version of the yeast metabolome database
inferredcites →https://doi.org/10.1093/nar/gkx1089openalex-snapshot
HMDB 4.0: the human metabolome database for 2018
inferredcites →https://doi.org/10.1093/nar/gkx1132openalex-snapshot
The Reactome Pathway Knowledgebase
inferredcites →https://doi.org/10.1093/nar/gky092openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gky310openalex-snapshot
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
inferredcites →https://doi.org/10.1093/nar/gky992openalex-snapshot
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
inferredcites →https://doi.org/10.1093/ndt/gfv364openalex-snapshot
The application of multi-omics and systems biology to identify therapeutic targets in chronic kidney disease
inferredcites →https://doi.org/10.1101/374520openalex-snapshot
iOmicsPASS: a novel method for integration of multi-omics data over biological networks and discovery of predictive subnetworks
inferredcites →https://doi.org/10.1104/pp.105.060459openalex-snapshot
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses
inferredcites →https://doi.org/10.1104/pp.105.060525openalex-snapshot
KaPPA-View. A Web-Based Analysis Tool for Integration of Transcript and Metabolite Data on Plant Metabolic Pathway Maps
inferredcites →https://doi.org/10.1104/pp.16.01942openalex-snapshot
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants
inferredcites →https://doi.org/10.1111/febs.13128openalex-snapshot
Modeling the effects of commonly used drugs on human metabolism
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02016.xopenalex-snapshot
mapman : a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03293.xopenalex-snapshot
Data integration in plant biology: the O2PLS method for combined modeling of transcript and metabolite data
inferredcites →https://doi.org/10.1128/aem.60.10.3724-3731.1994openalex-snapshot
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
inferredcites →https://doi.org/10.1128/jb.00740-06openalex-snapshot
Experimental and Computational Assessment of Conditionally Essential Genes inEscherichia coli
inferredcites →https://doi.org/10.1128/mbio.00204-15openalex-snapshot
Metabolic Signatures of Bacterial Vaginosis
inferredcites →https://doi.org/10.1128/mbio.00525-18openalex-snapshot
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research
inferredcites →https://doi.org/10.1128/msystems.00013-15openalex-snapshot
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
inferredcites →https://doi.org/10.1136/bmj.k2179openalex-snapshot
Role of the gut microbiota in nutrition and health
inferredcites →https://doi.org/10.1146/annurev-biochem-061516-044757openalex-snapshot
Systems Biology of Metabolism
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164359openalex-snapshot
Next-Generation DNA Sequencing Methods
inferredcites →https://doi.org/10.1155/2010/642420openalex-snapshot
A Metabolic Model of Human Erythrocytes: Practical Application of the E-Cell Simulation Environment
inferredcites →https://doi.org/10.1159/000455952openalex-snapshot
Variations in the Prevalence of Obesity Among European Countries, and a Consideration of Possible Causes.
inferredcites →https://doi.org/10.1186/1471-2105-7-1openalex-snapshot
Fast-Find: A novel computational approach to analyzing combinatorial motifs
inferredcites →https://doi.org/10.1186/1471-2105-7-109openalex-snapshot
VANTED: A system for advanced data analysis and visualization in the context of biological networks
inferredcites →https://doi.org/10.1186/1471-2105-7-176openalex-snapshot
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
inferredcites →https://doi.org/10.1186/1471-2105-7-s3-s5openalex-snapshot
A critical review of PASBio's argument structures for biomedical verbs
inferredcites →https://doi.org/10.1186/1471-2164-14-893openalex-snapshot
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants
inferredcites →https://doi.org/10.1186/1742-4682-2-18openalex-snapshot
Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition
inferredcites →https://doi.org/10.1186/1752-0509-3-82openalex-snapshot
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
inferredcites →https://doi.org/10.1186/1752-0509-7-64openalex-snapshot
3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data
inferredcites →https://doi.org/10.1186/1752-0509-7-s6-s1openalex-snapshot
Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model
inferredcites →https://doi.org/10.1186/s12859-018-2371-3openalex-snapshot
Integrating omics datasets with the OmicsPLS package
inferredcites →https://doi.org/10.1186/s13059-015-0841-8openalex-snapshot
The microbiome quality control project: baseline study design and future directions
inferredcites →https://doi.org/10.1186/s13059-017-1359-zopenalex-snapshot
Experimental design and quantitative analysis of microbial community multiomics
inferredcites →https://doi.org/10.1371/journal.pcbi.1003580openalex-snapshot
Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
inferredcites →https://doi.org/10.1371/journal.pcbi.1004085openalex-snapshot
PathVisio 3: An Extendable Pathway Analysis Toolbox
inferredcites →https://doi.org/10.1371/journal.pcbi.1004321openalex-snapshot
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
inferredcites →https://doi.org/10.1371/journal.pcbi.1005752openalex-snapshot
mixOmics: An R package for ‘omics feature selection and multiple data integration
inferredcites →https://doi.org/10.1371/journal.pone.0006386openalex-snapshot
Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
inferredcites →https://doi.org/10.1371/journal.pone.0008365openalex-snapshot
VitisNet: “Omics” Integration through Grapevine Molecular Networks
inferredcites →https://doi.org/10.1371/journal.pone.0021318openalex-snapshot
Intuitive Visualization and Analysis of Multi-Omics Data and Application to Escherichia coli Carbon Metabolism
inferredcites →https://doi.org/10.1371/journal.pone.0039860openalex-snapshot
MassTRIX Reloaded: Combined Analysis and Visualization of Transcriptome and Metabolome Data
inferredcites →https://doi.org/10.1371/journal.pone.0039960openalex-snapshot
BiofOmics: A Web Platform for the Systematic and Standardized Collection of High-Throughput Biofilm Data
inferredcites →https://doi.org/10.1371/journal.pone.0049138openalex-snapshot
Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
inferredcites →https://doi.org/10.1371/journal.pone.0071060openalex-snapshot
Dynamic Simulation and Metabolome Analysis of Long-Term Erythrocyte Storage in Adenine–Guanosine Solution
inferredcites →https://doi.org/10.1371/journal.pone.0071462openalex-snapshot
Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data
inferredcites →https://doi.org/10.1371/journal.ppat.1004786openalex-snapshot
Systems Biology for Biologists
inferredcites →https://doi.org/10.1377/hlthaff.2017.1427openalex-snapshot
Genetic Test Availability And Spending: Where Are We Now? Where Are We Going?
inferredcites →https://doi.org/10.1515/jib-2011-160openalex-snapshot
MADMAX – Management and analysis database for multiple ~omics experiments
inferredcites →https://doi.org/10.15252/msb.20178126openalex-snapshot
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
inferredcites →https://doi.org/10.1530/jme-18-0055openalex-snapshot
Integrated omics: tools, advances and future approaches
inferredcites →https://doi.org/10.2144/000114414openalex-snapshot
Analysis of Formalin-Fixed, Paraffin-Embedded (FFPE) Tissue Via Proteomic Techniques and Misconceptions of Antigen Retrieval
inferredcites →https://doi.org/10.2174/1871524915666160510124150openalex-snapshot
Understanding the Metabolic Consequences of Human Arylsulfatase A Deficiency through a Computational Systems Biology Study
inferredcites →https://doi.org/10.3233/978-1-60750-704-8-160openalex-snapshot
Cell Illustrator 4.0: A Computational Platform for Systems Biology
inferredcites →https://doi.org/10.3233/isb-2010-0415openalex-snapshot
Cell Illustrator 4.0: A Computational Platform for Systems Biology
inferredcites →https://doi.org/10.3389/fbioe.2015.00038openalex-snapshot
Metabolonote: A Wiki-Based Database for Managing Hierarchical Metadata of Metabolome Analyses
inferredcites →https://doi.org/10.3389/fmicb.2013.00050openalex-snapshot
Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill
inferredcites →https://doi.org/10.3389/fmolb.2019.00002openalex-snapshot
Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging
inferredcites →https://doi.org/10.3390/ijms18081652openalex-snapshot
Transcriptome Profiling in Human Diseases: New Advances and Perspectives
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inferred← citeshttps://doi.org/10.1016/b978-0-443-16092-9.00001-1openalex-snapshot
From omic to multi-integrative omics approach
inferred← citeshttps://doi.org/10.1016/b978-0-443-16092-9.00018-7openalex-snapshot
Omics technologies for crop improvement
inferred← citeshttps://doi.org/10.1016/b978-0-443-16092-9.00023-0openalex-snapshot
Omics technology policy and society research
inferred← citeshttps://doi.org/10.1016/b978-0-443-18502-1.00012-2openalex-snapshot
Immunotoxicogenomics: A systemic approach in the study of toxicants
inferred← citeshttps://doi.org/10.1016/b978-0-443-21625-1.00013-0openalex-snapshot
Role of omics tools in the understanding of abiotic stress tolerance in wheat crop
inferred← citeshttps://doi.org/10.1016/b978-0-443-22305-1.00010-2openalex-snapshot
Role of artificial intelligence and machine learning in predicting all-trans retinoic acid treatment outcomes
inferred← citeshttps://doi.org/10.1016/b978-0-443-22326-6.00010-9openalex-snapshot
The significance and evolution of biological databases in systems biology
inferred← citeshttps://doi.org/10.1016/b978-0-443-22326-6.00023-7openalex-snapshot
Systems biology of cancer
inferred← citeshttps://doi.org/10.1016/b978-0-443-22326-6.00025-0openalex-snapshot
Future directions on systems biology
inferred← citeshttps://doi.org/10.1016/b978-0-443-23671-6.00012-8openalex-snapshot
Predictive modeling and quantitative risk assessment toward assured microbiological food safety in tropical countries
inferred← citeshttps://doi.org/10.1016/b978-0-443-30058-5.00022-5openalex-snapshot
Metabolomics approach for food safety authentication
inferred← citeshttps://doi.org/10.1016/b978-0-443-33026-1.00007-4openalex-snapshot
Integration of omics technologies in plant sciences
inferred← citeshttps://doi.org/10.1016/b978-0-443-33263-0.00007-3openalex-snapshot
Cancer detection: Screening tools and biomarker discoveries
inferred← citeshttps://doi.org/10.1016/b978-0-443-33349-1.00009-0openalex-snapshot
Breast cancer stem cell targeting
inferred← citeshttps://doi.org/10.1016/b978-0-443-33574-7.00011-0openalex-snapshot
Standardizing sample preparation: ensuring integrity in urinary omics
inferred← citeshttps://doi.org/10.1016/b978-0-443-33574-7.00015-8openalex-snapshot
Data integration techniques in urinary omics
inferred← citeshttps://doi.org/10.1016/b978-0-443-33594-5.00021-4openalex-snapshot
Metabolomics as a tool to study responses of plant growth-promoting rhizobacteria to stress
inferred← citeshttps://doi.org/10.1016/b978-0-443-33633-1.00012-5openalex-snapshot
AI and computational biology for advancing heavy metal stress-tolerant crop breeding
inferred← citeshttps://doi.org/10.1016/b978-0-443-36457-0.00013-4openalex-snapshot
Introduction to systems biology in crop improvement
inferred← citeshttps://doi.org/10.1016/b978-0-443-36615-4.00004-xopenalex-snapshot
Plant metabolite profiling: Techniques and theoretical framework
inferred← citeshttps://doi.org/10.1016/b978-0-443-36615-4.00029-4openalex-snapshot
Integrative approaches of metabolomics and DNA barcoding for identifying combinatorial discriminatory quality markers
inferred← citeshttps://doi.org/10.1016/b978-0-443-40344-6.00277-5openalex-snapshot
Microbiome Research and the Advent of Next-Generation Sequencing
inferred← citeshttps://doi.org/10.1016/b978-0-443-40483-2.00017-0openalex-snapshot
Unravelling the microbiome: the fundamental role of multi-omics approaches in understanding microbial communities
inferred← citeshttps://doi.org/10.1016/b978-0-443-40483-2.00023-6openalex-snapshot
Harnessing Gut Microbiome and Multi-Omics Integration for Next-Generation Therapeutic Strategies
inferred← citeshttps://doi.org/10.1016/b978-0-443-40488-7.00008-3openalex-snapshot
Systems biology approaches in bioenergy research
inferred← citeshttps://doi.org/10.1016/b978-0-443-40529-7.00010-xopenalex-snapshot
Rational design of pathway modification for secondary metabolites
inferred← citeshttps://doi.org/10.1016/b978-0-443-44135-6.00009-7openalex-snapshot
Metabolomics in studying cardiometabolic effects of secondary metabolites
inferred← citeshttps://doi.org/10.1016/b978-0-443-45056-3.00007-8openalex-snapshot
Mesenchymal stem cells and extracellular vesicles in neurodegenerative diseases
inferred← citeshttps://doi.org/10.1016/bs.acc.2021.09.004openalex-snapshot
Metabolomics of peripheral artery disease
inferred← citeshttps://doi.org/10.1016/bs.afnr.2026.02.001openalex-snapshot
Microbiota, fermentation, and metabolite biotransformation: Pathways to functional foods and personalised nutrition
inferred← citeshttps://doi.org/10.1016/bs.apcsb.2021.03.006openalex-snapshot
Big data, integrative omics and network biology
inferred← citeshttps://doi.org/10.1016/bs.apcsb.2026.02.008openalex-snapshot
Functional omics for disease modelling and target identification in neurodegenerative drug discovery
inferred← citeshttps://doi.org/10.1016/bs.apha.2025.01.012openalex-snapshot
The translational impact of bioinformatics on traditional wet lab techniques
inferred← citeshttps://doi.org/10.1016/bs.arnmr.2026.04.003openalex-snapshot
NMR spectroscopy for precision medicine and clinical translation
inferred← citeshttps://doi.org/10.1016/j.aca.2020.10.038openalex-snapshot
Multi-omics integration in biomedical research – A metabolomics-centric review
inferred← citeshttps://doi.org/10.1016/j.aca.2020.11.020openalex-snapshot
Single cell metabolomics using mass spectrometry: Techniques and data analysis
inferred← citeshttps://doi.org/10.1016/j.advnut.2023.09.002openalex-snapshot
Carotenoids in Health as Studied by Omics-Related Endpoints
inferred← citeshttps://doi.org/10.1016/j.aqrep.2026.103584openalex-snapshot
Quantitative proteomics across ten tissues in the Pacific abalone, Haliotis discus hannai
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2021.737438openalex-snapshot
Omics research on abalone (Haliotis spp.): Current state and perspectives
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738845openalex-snapshot
An integrated proteomics and metabolomics investigation of feed efficiency in seawater reared Chinook salmon (Oncorhynchus tshawytscha)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741292openalex-snapshot
Metabolomic characterization of Chinese sturgeon (Acipenser sinensis) in semi-intensive and recirculating aquaculture systems
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742172openalex-snapshot
Multi-omics integrative analysis reveals the molecular mechanisms of muscle adaptive changes in largemouth bass (Micropterus salmoides) under water flow stress in recirculating aquaculture
inferred← citeshttps://doi.org/10.1016/j.arr.2021.101346openalex-snapshot
Omics sciences for systems biology in Alzheimer’s disease: State-of-the-art of the evidence
inferred← citeshttps://doi.org/10.1016/j.arr.2023.102180openalex-snapshot
Pangenomics: A new era in the field of neurodegenerative diseases
inferred← citeshttps://doi.org/10.1016/j.artmed.2024.102902openalex-snapshot
A comprehensive survey on the use of deep learning techniques in glioblastoma
inferred← citeshttps://doi.org/10.1016/j.bbadis.2024.167339openalex-snapshot
Advancing personalized medicine: Integrating statistical algorithms with omics and nano-omics for enhanced diagnostic accuracy and treatment efficacy
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